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Chipanina NN, Shainyan BA, Oznobikhina LP, Lazareva NF. The Rivalry between Intramolecular Tetrel Bonds and Intermolecular Hydrogen Bonds in (O-Si) Chelates of N-Silylmethylamides and -ureas. A Theoretical Study. Chemphyschem 2024:e202400410. [PMID: 39005005 DOI: 10.1002/cphc.202400410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/21/2024] [Indexed: 07/16/2024]
Abstract
The comparison of the results of theoretical calculations of (O-Si) chelates of N-silylmethylated amides and ureas with the axial chlorine or fluorine atom at silicon to the data of X-ray analysis of related compounds revealed the formation of covalent O-Si tetrel bonds (TB) or noncovalent O⋅⋅⋅Si tetrel bonds (NTB). The nature of the formed tetrel bond depends on the substituents at silicon and the polarity of the medium. The competition between the intramolecular TB and intermolecular hydrogen bonds (HB) with proton donors depends on the center of basicity involved in the formation of HB, which could be either oxygen or halogen. The hydrogen bonding can result in changing the nature of the tetrel bonds from covalent to noncovalent and vice versa by varying their lengths and energies. The O-Si bond energies estimated by QTAIM analysis of N-[(chlorodimethylsilyl)methyl]-N-methylacetamide and its H-complexes vary within the range of 7.2 and 12 kcal/mol in gas and solution, respectively, and correlate with the O-Si bond lengths.
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Affiliation(s)
- Nina N Chipanina
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences, 1 Favorsky Street, 664033, Irkutsk, Russian Federation
| | - Bagrat A Shainyan
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences, 1 Favorsky Street, 664033, Irkutsk, Russian Federation
| | - Larisa P Oznobikhina
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences, 1 Favorsky Street, 664033, Irkutsk, Russian Federation
| | - Nataliya F Lazareva
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences, 1 Favorsky Street, 664033, Irkutsk, Russian Federation
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Synthesis and structure of N-(silylmethyl)benzanilides with SiC3OCl and SiC2OCl2 coordination units. J Organomet Chem 2023. [DOI: 10.1016/j.jorganchem.2023.122634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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N-(Chlorodimethylsilyl)methyl anilides: synthesis and structure. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.11.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Lazareva NF, Sterkhova IV. Pivalic Acid N-[Chloro(dimethyl)silylmethyl]-N-methylamide: Synthesis and Structure. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222080126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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(O-Si)-Chelate acetic and benzoic acid N-(fluorosilylmethyl)amides: synthesis and structure. Russ Chem Bull 2022. [DOI: 10.1007/s11172-022-3419-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Lazareva NF, Sterkhova IV, Vashchenko AV. N-[difluoro(methyl)silyl]carboxamides: Synthesis, structural features and theoretical estimating of Si←O dative bond energy. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129130] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Lazareva NF, Chipanina NN, Oznobikhina LP, Shainyan BA. Alkylation versus trans-silylation of N-methyl-N-trimethylsilylacetamide with ambident electrophiles (chloromethyl)fluorosilanes. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2018.09.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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Lazareva NF, Nikonov АY. α-Carbofunctional silanols: synthesis, structure, properties. Russ Chem Bull 2017. [DOI: 10.1007/s11172-017-1867-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Lazareva NF, Chipanina NN, Oznobikhina LP, Shainyan BA. Two competitive routes and the mechanism of trans-silylation of N-trimethylsilyl-N-methylacetamide: Quantum chemical and FTIR study. J Organomet Chem 2016. [DOI: 10.1016/j.jorganchem.2016.09.028] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Chipanina NN, Lazareva NF, Oznobikhina LP, Lazarev IM, Shainyan BA. The hydrolysis of (OSi)-chelate [N-(acetamido)methyl]dimethylchlorosilanes. DFT and MP2 study, QTAIM and NBO analysis. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.08.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Bylikin SY, Korlyukov AA, Shipov AG, Arkhipov DE, Kalashnikova NA, Negrebetsky VV, Baukov YI. Regioselective chelation in the reaction of N-trimethylsilyl-N-acetylglycine N’,N’-dimethylamide with chloro(chloromethyl)dimethylsilane. MENDELEEV COMMUNICATIONS 2015. [DOI: 10.1016/j.mencom.2015.03.011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Ozeryanskii VA, Gorbacheva AY, Pozharskii AF, Vlasenko MP, Tereznikov AY, Chernov'yants MS. The first proton sponge-based amino acids: synthesis, acid–base properties and some reactivity. Org Biomol Chem 2015; 13:8524-32. [DOI: 10.1039/c5ob01065a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first hybrid bases constructed from 1,8-bis(dimethylamino)naphthalene and glycine or alanine residues were synthesised and structurally characterised and unusual channels of their reactivity revealed.
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Affiliation(s)
- Valery A. Ozeryanskii
- Department of Organic Chemistry
- Southern Federal University
- 344090 Rostov-on-Don
- Russian Federation
| | - Anastasia Yu. Gorbacheva
- Department of Organic Chemistry
- Southern Federal University
- 344090 Rostov-on-Don
- Russian Federation
| | - Alexander F. Pozharskii
- Department of Organic Chemistry
- Southern Federal University
- 344090 Rostov-on-Don
- Russian Federation
| | - Marina P. Vlasenko
- Department of Organic Chemistry
- Southern Federal University
- 344090 Rostov-on-Don
- Russian Federation
| | - Alexander Yu. Tereznikov
- Department of Analytical Chemistry
- Southern Federal University
- 344090 Rostov-on-Don
- Russian Federation
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Nikolin AA, Negrebetsky VV. Synthesis, properties and reactivity of intramolecular hypercoordinate silicon complexes. RUSSIAN CHEMICAL REVIEWS 2014. [DOI: 10.1070/rc2014v083n09abeh004385] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Chipanina NN, Lazareva NF, Aksamentova TN, Doronina EP, Shainyan BA. Effect of proton donors on the intramolecular coordination C=O→Si-F in (acyloxymethyl)trifluorosilanes.Ab initio,DFT and FTIR study, QTAIM analysis. J PHYS ORG CHEM 2014. [DOI: 10.1002/poc.3352] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Nina N. Chipanina
- A. E. Favorskii Irkutsk Institute of Chemistry; Siberian Division, Russian Academy of Sciences; 1 Favorskii Street Irkutsk 664033 Russia
| | - Nataliya F. Lazareva
- A. E. Favorskii Irkutsk Institute of Chemistry; Siberian Division, Russian Academy of Sciences; 1 Favorskii Street Irkutsk 664033 Russia
| | - Tamara N. Aksamentova
- A. E. Favorskii Irkutsk Institute of Chemistry; Siberian Division, Russian Academy of Sciences; 1 Favorskii Street Irkutsk 664033 Russia
| | - Evgeniya P. Doronina
- A. E. Favorskii Irkutsk Institute of Chemistry; Siberian Division, Russian Academy of Sciences; 1 Favorskii Street Irkutsk 664033 Russia
| | - Bagrat A. Shainyan
- A. E. Favorskii Irkutsk Institute of Chemistry; Siberian Division, Russian Academy of Sciences; 1 Favorskii Street Irkutsk 664033 Russia
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Shipov AG, Kramarova EP, Fang H, Arkhipov DE, Nikolin AA, Bylikin SY, Negrebetsky VV, Korlyukov AA, Voronina NA, Bassindale AR, Taylor PG, Baukov YI. 1-Organosulfonyl-2-sila-5-piperazinones: Synthesis, molecular and crystal structure, and chemical transformations into 2-aminoacid derivatives. J Organomet Chem 2013. [DOI: 10.1016/j.jorganchem.2013.05.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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16
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Sohail M, Bassindale AR, Taylor PG, Korlyukov AA, Arkhipov DE, Male L, Coles SJ, Hursthouse MB. Synthesis and Hydrolysis–Condensation Study of Water-Soluble Self-Assembled Pentacoordinate Polysilylamides. Organometallics 2013. [DOI: 10.1021/om301137b] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Muhammad Sohail
- Department of Chemistry and Analytical Sciences, The Open University, Walton Hall, Milton Keynes, MK7 6AA,
U.K
| | - Alan R. Bassindale
- Department of Chemistry and Analytical Sciences, The Open University, Walton Hall, Milton Keynes, MK7 6AA,
U.K
| | - Peter G. Taylor
- Department of Chemistry and Analytical Sciences, The Open University, Walton Hall, Milton Keynes, MK7 6AA,
U.K
| | - Alexander A. Korlyukov
- A.N. Nesmeyanov Institute
of Organoelement Compounds (INEOS), Russian Academy of Sciences, 28 Vavilov Street, B-334, Moscow 119991, Russia
| | - Dmitry E. Arkhipov
- A.N. Nesmeyanov Institute
of Organoelement Compounds (INEOS), Russian Academy of Sciences, 28 Vavilov Street, B-334, Moscow 119991, Russia
| | - Louise Male
- EPSRC National Crystallography
Service, School of Chemistry, University of Southampton, Southampton, SO17 1BJ U.K
| | - Simon J. Coles
- EPSRC National Crystallography
Service, School of Chemistry, University of Southampton, Southampton, SO17 1BJ U.K
| | - Michael B. Hursthouse
- EPSRC National Crystallography
Service, School of Chemistry, University of Southampton, Southampton, SO17 1BJ U.K
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