Aminoimidazole ribonucleotide carboxylase. Partial purification and properties

Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway

Aminoimidazole riobnucleotide carboxylase, the sixth step in the purine biosynthetic pathway, catalyzes the conversion of aminoimidazole ribonucleotide (AIR) to carboxyaminoimidazole ribonucleotide (CAIR). The gene products of the purE and purK genes (PurE and PurK, respectively) thought to be responsible for this activity have been overexpressed and the proteins purified to homogeneity. PurE separates from PurK in the first ammonium sulfate fractionation during the purification. No evidence for association of the two gene products under a variety of conditions using a variety of methods could be obtained. To facilitate the assay for CAIR production, the purC gene product, 5-aminoimidazole-4-N-succinylcarboxamide ribonucleotide (SAICAR) synthetase has also been overexpressed and purified to homogeneity. The activities of PurE, PurK, and PurE.PurK have been investigated. PurE alone is capable of catalyzing the conversion of AIR to CAIR 1 million times faster than the nonenzymatic rate. The Km for HCO3- in the PurE-dependent reaction is 110 mM! PurK possesses an ATPase activity that is dependent on the presence of AIR. No bicarbonate dependence on this reaction could be demonstrated (less than 100 microM), and AIR is not carboxylated during the hydrolysis of ATP. Incubation of a 1:1 mixture of PurE and PurK at low concentrations of bicarbonate (less than 100 microM) revealed that CAIR is produced but requires the stoichiometric conversion of ATP to ADP and Pi. No dependence on the concentration of HCO3- could be demonstrated. A new energy requirement in the purine biosynthetic pathway has been established.

The influence of N metabolism and organic acid synthesis on the natural abundance of isotopes of carbon in plants

This paper relates the ¹³ C/¹² C ratio of C₃ plant material relative to that of source CO₂ to the N source for growth, the organic N content of the plant, and the extent of organic acid synthesis. The ¹³ C/¹² C ratio is quantified as Δ, defined as (δ¹³ C substrate -δ¹³ C product)/(1+δ¹³ C product), where δ¹³ C values of substrate or product (i.e. the samples) are defined as [¹³ C/¹² C]_sample ]/[(¹³ C/¹² C)_standard ]-1. The computation is performed by relating differences in plant composition as a function of N nutrition and acid synthesis to the fraction of plant C which is acquired via Rubisco and via other carboxylases. The fractional contribution of the different carboxylases to C gain is then related, using the known isotopic fractionations exhibited by these carboxylases, in a model to predict the final Δ of the plant (relative to atmospheric CO₂ ). Application of this approach to a 'typical' C₃ land plant yields predictions of the decrease of Δ relative to a hypothetical case in which all C is fixed via Rubisco. The predicted decreases range from 0-24 %, for NH₄ ⁺ assimilation (which always occurs in the roots) to 2-80%, for NO₃ ^- assimilation in shoots with the organic acid salt which results from acid-base balance, plus any additional organic acid salts plus free acids for a plant with a basal C:N molar ratio in organic material of 15. Intermediate values are predicted for symbiotic growth with N₂ , or where NO₃ ^- assimilation in root or shoot is accompanied by some acid-base regulation via OH- loss to the root medium. Comparison with published data on the difference in Δ of Ricinus communis cultured with NH₄ ⁺ or NO₃ ^- shows that the measured influence of nitrogen source is in the right direction (NO₃ ^- grown plants with a smaller Δ, i.e. a larger deviation from the value predicted for the absence of non-Rubisco carboxylations) to be explained by the observed difference in composition and hence fractional C contribution by the various carboxylases. However, the effect of N source on Δ is greater than that predicted by the model, i.e. a 2.1 % decrease as opposed to a 0.10 % decrease. It is likely that the major cause of the difference in δ¹³ C of the plants grown on the two N sources is a change in the ratio of transport and biochemical conductances of leaf photosynthesis. Such a change is quantitatively consistent with the lower water use efficiency of NH₄ ⁺ -grown plants. The predicted, and observed, changes in Δ as a function of N source are of the same magnitude as those found for C₃ terrestrial species grown at different temperatures or photon flux densities, or in environments yielding different water use efficiencies by changing root water supply relative to shoot evaporation potential. Variations in N source should be added to the factors which might alter δ of plants growing in the field.

Stereochemistry of decarboxylation of trans-4-hydroxycinnamic acid by Aerobacter

The stereochemistry of the decarboxylation of trans-p-coumaric acid to 4-hydroxystyrene by Aerobacter aerogenes has been examined. The decarboxylation has been found to proceed with retention of the geometry about the trans-substituted double-bond.

Purification and properties of an enzyme duet, phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthetase, involved in the biosynthesis of purine nucleotides de novo

Purification and some properties of an adjacent pair of enzymes in the biosynthetic pathway to AMP, phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) and phosphoribosylaminoimidazolesuccinocarboxamide synthetase (EC 6.3.2.6), are described. The enzymes form a duet, which may be regarded as a single molecule with a dual function, or as two very similar substances.