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Fafrowicz M, Tutajewski M, Sieradzki I, Ochab JK, Ceglarek-Sroka A, Lewandowska K, Marek T, Sikora-Wachowicz B, Podolak IT, Oświęcimka P. Classification of ROI-based fMRI data in short-term memory tasks using discriminant analysis and neural networks. Front Neuroinform 2024; 18:1480366. [PMID: 39759761 PMCID: PMC11695337 DOI: 10.3389/fninf.2024.1480366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Accepted: 11/26/2024] [Indexed: 01/07/2025] Open
Abstract
Understanding brain function relies on identifying spatiotemporal patterns in brain activity. In recent years, machine learning methods have been widely used to detect connections between regions of interest (ROIs) involved in cognitive functions, as measured by the fMRI technique. However, it's essential to match the type of learning method to the problem type, and extracting the information about the most important ROI connections might be challenging. In this contribution, we used machine learning techniques to classify tasks in a working memory experiment and identify the brain areas involved in processing information. We employed classical discriminators and neural networks (convolutional and residual) to differentiate between brain responses to distinct types of visual stimuli (visuospatial and verbal) and different phases of the experiment (information encoding and retrieval). The best performance was achieved by the LGBM classifier with 1-time point input data during memory retrieval and a convolutional neural network during the encoding phase. Additionally, we developed an algorithm that took into account feature correlations to estimate the most important brain regions for the model's accuracy. Our findings suggest that from the perspective of considered models, brain signals related to the resting state have a similar degree of complexity to those related to the encoding phase, which does not improve the model's accuracy. However, during the retrieval phase, the signals were easily distinguished from the resting state, indicating their different structure. The study identified brain regions that are crucial for processing information in working memory, as well as the differences in the dynamics of encoding and retrieval processes. Furthermore, our findings indicate spatiotemporal distinctions related to these processes. The analysis confirmed the importance of the basal ganglia in processing information during the retrieval phase. The presented results reveal the benefits of applying machine learning algorithms to investigate working memory dynamics.
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Affiliation(s)
- Magdalena Fafrowicz
- Department of Cognitive Neuroscience and Neuroergonomics, Jagiellonian University, Kraków, Poland
| | - Marcin Tutajewski
- Institute of Theoretical Physics, Jagiellonian University, Kraków, Poland
| | - Igor Sieradzki
- Group of Machine Learning Methods GMUM, Faculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland
| | - Jeremi K. Ochab
- Institute of Theoretical Physics, Jagiellonian University, Kraków, Poland
- Mark Kac Center for Complex Systems Research, Jagiellonian University, Kraków, Poland
| | - Anna Ceglarek-Sroka
- Department of Cognitive Neuroscience and Neuroergonomics, Jagiellonian University, Kraków, Poland
| | - Koryna Lewandowska
- Department of Cognitive Neuroscience and Neuroergonomics, Jagiellonian University, Kraków, Poland
| | - Tadeusz Marek
- Faculty of Psychology, SWPS University, Katowice, Poland
| | - Barbara Sikora-Wachowicz
- Department of Cognitive Neuroscience and Neuroergonomics, Jagiellonian University, Kraków, Poland
| | - Igor T. Podolak
- Group of Machine Learning Methods GMUM, Faculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland
| | - Paweł Oświęcimka
- Institute of Theoretical Physics, Jagiellonian University, Kraków, Poland
- Group of Machine Learning Methods GMUM, Faculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, Kraków, Poland
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Jiang L, Eickhoff SB, Genon S, Wang G, Yi C, He R, Huang X, Yao D, Dong D, Li F, Xu P. Multimodal Covariance Network Reflects Individual Cognitive Flexibility. Int J Neural Syst 2024; 34:2450018. [PMID: 38372035 DOI: 10.1142/s0129065724500187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
Cognitive flexibility refers to the capacity to shift between patterns of mental function and relies on functional activity supported by anatomical structures. However, how the brain's structural-functional covarying is preconfigured in the resting state to facilitate cognitive flexibility under tasks remains unrevealed. Herein, we investigated the potential relationship between individual cognitive flexibility performance during the trail-making test (TMT) and structural-functional covariation of the large-scale multimodal covariance network (MCN) using magnetic resonance imaging (MRI) and electroencephalograph (EEG) datasets of 182 healthy participants. Results show that cognitive flexibility correlated significantly with the intra-subnetwork covariation of the visual network (VN) and somatomotor network (SMN) of MCN. Meanwhile, inter-subnetwork interactions across SMN and VN/default mode network/frontoparietal network (FPN), as well as across VN and ventral attention network (VAN)/dorsal attention network (DAN) were also found to be closely related to individual cognitive flexibility. After using resting-state MCN connectivity as representative features to train a multi-layer perceptron prediction model, we achieved a reliable prediction of individual cognitive flexibility performance. Collectively, this work offers new perspectives on the structural-functional coordination of cognitive flexibility and also provides neurobiological markers to predict individual cognitive flexibility.
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Affiliation(s)
- Lin Jiang
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
| | - Simon B Eickhoff
- Institute of Neuroscience and Medicine, Brain and Behavior (INM-7), Research Center Jülich, Jülich, Germany
- Institute for Systems Neuroscience, Medical Faculty, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
| | - Sarah Genon
- Institute of Neuroscience and Medicine, Brain and Behavior (INM-7), Research Center Jülich, Jülich, Germany
- Institute for Systems Neuroscience, Medical Faculty, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
| | - Guangying Wang
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
| | - Chanlin Yi
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
| | - Runyang He
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
| | - Xunan Huang
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
- School of Foreign Languages, University of Electronic Science and Technology of China, Sichuan, Chengdu 611731, P. R. China
| | - Dezhong Yao
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
- Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035, Chengdu, P. R. China
- School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, P. R. China
| | - Debo Dong
- Institute of Neuroscience and Medicine, Brain and Behavior (INM-7), Research Center Jülich, Jülich, Germany
- Faculty of Psychology, Southwest University, Chongqing 400715, P. R. China
| | - Fali Li
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
- Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035, Chengdu, P. R. China
- Department of Electrical and Computer Engineering, Faculty of Science and Technology, University of Macau, Macau, P. R. China
| | - Peng Xu
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
- School of Life Science and Technology, Center for Information in Medicine, University of Electronic Science and Technology of China, Chengdu 611731, P. R. China
- Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, 2019RU035, Chengdu, P. R. China
- Radiation Oncology Key Laboratory of Sichuan Province, ChengDu 610041, P. R. China
- Rehabilitation Center, Qilu Hospital of Shandong University, Jinan 250012, P. R. China
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James N, Menzies M. Collective Dynamics, Diversification and Optimal Portfolio Construction for Cryptocurrencies. ENTROPY (BASEL, SWITZERLAND) 2023; 25:931. [PMID: 37372275 DOI: 10.3390/e25060931] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 06/07/2023] [Accepted: 06/12/2023] [Indexed: 06/29/2023]
Abstract
Since its conception, the cryptocurrency market has been frequently described as an immature market, characterized by significant swings in volatility and occasionally described as lacking rhyme or reason. There has been great speculation as to what role it plays in a diversified portfolio. For instance, is cryptocurrency exposure an inflationary hedge or a speculative investment that follows broad market sentiment with amplified beta? We have recently explored similar questions with a clear focus on the equity market. There, our research revealed several noteworthy dynamics such as an increase in the market's collective strength and uniformity during crises, greater diversification benefits across equity sectors (rather than within them), and the existence of a "best value" portfolio of equities. In essence, we can now contrast any potential signatures of maturity we identify in the cryptocurrency market and contrast these with the substantially larger, older and better-established equity market. This paper aims to investigate whether the cryptocurrency market has recently exhibited similar mathematical properties as the equity market. Instead of relying on traditional portfolio theory, which is grounded in the financial dynamics of equity securities, we adjust our experimental focus to capture the presumed behavioral purchasing patterns of retail cryptocurrency investors. Our focus is on collective dynamics and portfolio diversification in the cryptocurrency market, and examining whether previously established results in the equity market hold in the cryptocurrency market and to what extent. The results reveal nuanced signatures of maturity related to the equity market, including the fact that correlations collectively spike around exchange collapses, and identify an ideal portfolio size and spread across different groups of cryptocurrencies.
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Affiliation(s)
- Nick James
- School of Mathematics and Statistics, University of Melbourne, Victoria 3010, Australia
| | - Max Menzies
- Beijing Institute of Mathematical Sciences and Applications, Tsinghua University, Beijing 101408, China
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Fafrowicz M, Ceglarek A, Olszewska J, Sobczak A, Bohaterewicz B, Ostrogorska M, Reuter-Lorenz P, Lewandowska K, Sikora-Wachowicz B, Oginska H, Hubalewska-Mazgaj M, Marek T. Dynamics of working memory process revealed by independent component analysis in an fMRI study. Sci Rep 2023; 13:2900. [PMID: 36808174 PMCID: PMC9938907 DOI: 10.1038/s41598-023-29869-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 02/11/2023] [Indexed: 02/20/2023] Open
Abstract
Human memory is prone to errors in many everyday activities but also when cultivating hobbies such as traveling and/or learning a new language. For instance, while visiting foreign countries, people erroneously recall foreign language words that are meaningless to them. Our research simulated such errors in a modified Deese-Roediger-McDermott paradigm for short-term memory with phonologically related stimuli aimed at uncovering behavioral and neuronal indices of false memory formation with regard to time-of-day, a variable known to influence memory. Fifty-eight participants were tested in a magnetic resonance (MR) scanner twice. The results of an Independent Component Analysis revealed encoding-related activity of the medial visual network preceding correct recognition of positive probes and correct rejection of lure probes. The engagement of this network preceding false alarms was not observed. We also explored if diurnal rhythmicity influences working memory processes. Diurnal differences were seen in the default mode network and the medial visual network with lower deactivation in the evening hours. The GLM results showed greater activation of the right lingual gyrus, part of the visual cortex and the left cerebellum in the evening. The study offers new insight into the mechanisms associated with false memories, suggesting that deficient engagement of the medial visual network during the memorization phase of a task results in short-term memory distortions. The results shed new light on the dynamics of working memory processes by taking into account the effect of time-of-day on memory performance.
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Affiliation(s)
- Magdalena Fafrowicz
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348, Krakow, Poland.
| | - Anna Ceglarek
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348, Krakow, Poland.
| | - Justyna Olszewska
- grid.267474.40000 0001 0674 4543Department of Psychology, University of Wisconsin-Oshkosh, Oshkosh, WI USA
| | - Anna Sobczak
- grid.5522.00000 0001 2162 9631Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348 Krakow, Poland
| | - Bartosz Bohaterewicz
- grid.433893.60000 0001 2184 0541Department of Psychology of Individual Differences, Psychological Diagnosis and Psychometrics, Faculty of Psychology, SWPS University of Social Sciences and Humanities, Warsaw, Poland
| | - Monika Ostrogorska
- grid.5522.00000 0001 2162 9631Chair of Radiology, Medical College, Jagiellonian University, Krakow, Poland
| | - Patricia Reuter-Lorenz
- grid.214458.e0000000086837370Department of Psychology, University of Michigan, Ann Arbor, MI USA
| | - Koryna Lewandowska
- grid.5522.00000 0001 2162 9631Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348 Krakow, Poland
| | - Barbara Sikora-Wachowicz
- grid.5522.00000 0001 2162 9631Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348 Krakow, Poland
| | - Halszka Oginska
- grid.5522.00000 0001 2162 9631Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348 Krakow, Poland
| | - Magdalena Hubalewska-Mazgaj
- grid.413454.30000 0001 1958 0162Department of Drug Addiction Pharmacology, Maj Institute of Pharmacology, Polish Academy of Sciences, Krakow, Poland
| | - Tadeusz Marek
- grid.5522.00000 0001 2162 9631Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Lojasiewicza Street 4, 30-348 Krakow, Poland
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