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Gia AP, de Juan A, Aranda D, Guijarro FG, Aragó J, Ortí E, García-Iglesias M, González-Rodríguez D. Highly Rigid, Yet Conformationally Adaptable, Bisporphyrin sp2-Cage Receptors Afford Outstanding Binding Affinities, Chelate Cooperativities, and Substrate Selectivities. J Am Chem Soc 2025; 147:918-931. [PMID: 39700308 PMCID: PMC11726566 DOI: 10.1021/jacs.4c13756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Revised: 11/26/2024] [Accepted: 11/27/2024] [Indexed: 12/21/2024]
Abstract
If we aim to develop efficient synthetic models of protein receptors and enzymes, we must understand the relationships of intra- and intermolecular interactions between hosts and guests and how they mutually influence their conformational energy landscape so as to adapt to each other to maximize binding energies and enhance substrate selectivities. Here, we introduce a novel design of cofacial (ZnII)bisporphyrin cages based on dynamic imine bonding, which is synthetically simple, but at the same time highly robust and versatile, affording receptors composed of only sp2-hybridized C and N atoms. The high structural rigidity of these cages renders them ideal hosts for ditopic molecules that can fit into the cavity and bind to both metal centers, leading to association constants as high as 109 M-1 in chloroform. These strong binding affinities are a consequence of the remarkable chelate cooperativities attained, with effective molarity (EM) values reaching record values over 103 M. However, we discovered that the cages can still adapt their structure to a more compact version, able to host slightly smaller guests. Such a conformational transition has an energy cost, which can be very different depending on the direction of the imine linkages in the cage skeleton and which results in EM values 2-3 orders of magnitude lower. This interplay between cooperativity and conformational adaptability leads to strong and unusual selectivities. Not only these metalloporphyrin receptors can choose to bind preferably to a particular guest, as a function of its size, but also the guest can select which host to bind, as a function now of the host's conformational rigidity. Such highly cooperative and selective associations are lost, however, in related flexible receptors where the imine bonds are reduced.
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Affiliation(s)
- A. Priscila Gia
- Nanostructured
Molecular Systems and Materials group, Organic Chemistry Department, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Alberto de Juan
- Nanostructured
Molecular Systems and Materials group, Organic Chemistry Department, Universidad Autónoma de Madrid, Madrid 28049, Spain
- Institute
for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Daniel Aranda
- Institute
of Molecular Science, Universidad de Valencia, Catedrático José Beltrán
2, Paterna 46980, Spain
| | - Fernando G. Guijarro
- Nanostructured
Molecular Systems and Materials group, Organic Chemistry Department, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Juan Aragó
- Institute
of Molecular Science, Universidad de Valencia, Catedrático José Beltrán
2, Paterna 46980, Spain
| | - Enrique Ortí
- Institute
of Molecular Science, Universidad de Valencia, Catedrático José Beltrán
2, Paterna 46980, Spain
| | - Miguel García-Iglesias
- QUIPRE
Department, Nanomedicine-IDIVAL, Universidad
de Cantabria, Avd. de
Los Castros, 46, Santander 39005, Spain
| | - David González-Rodríguez
- Nanostructured
Molecular Systems and Materials group, Organic Chemistry Department, Universidad Autónoma de Madrid, Madrid 28049, Spain
- Institute
for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid 28049, Spain
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2
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Wang S, Huang X, Xu Z, Zhu B, Ye Y, Zhang Z, Li S. Influence of solvent and axial coordination on self-assembly of a heteroditopic porphyrin derivative. J PORPHYR PHTHALOCYA 2021. [DOI: 10.1142/s108842462150125x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
A novel heteroditopic porphyrin and its zinc complex with four long aliphatic chains on the same side of the porphyrin ring were synthesized and used for controllable self-assembly. A variety of aggregation morphologies, including nanosheets, nanospheres, films, leaves, trunks, nanorods, and disks, were furnished by using different pyridyl ligands to coordinate with the Zn-porphyrin or selecting different solvents.
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Affiliation(s)
- Shuping Wang
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
| | - Xuechun Huang
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
| | - Ziwei Xu
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
| | - Benyue Zhu
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
| | - Yang Ye
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
| | - Zibin Zhang
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
| | - Shijun Li
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou 311121, P. R. China
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3
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Yamashita K, Furutani K, Ogawa T. Outstanding Enhancement in the Axial Coordination Ability of the Highly Rigid Cofacial Cyclic Metalloporphyrin Dimer. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100186] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Ken‐ichi Yamashita
- Department of Chemistry, Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
| | - Kazuhiro Furutani
- Department of Chemistry, Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
| | - Takuji Ogawa
- Department of Chemistry, Graduate School of Science Osaka University 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
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Sun Y, Chen C, Liu J, Liu L, Tuo W, Zhu H, Lu S, Li X, Stang PJ. Self-Assembly of Porphyrin-Based Metallacages into Octahedra. J Am Chem Soc 2020; 142:17903-17907. [DOI: 10.1021/jacs.0c08058] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Yan Sun
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, P. R. China
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
| | - Chongyi Chen
- Faculty of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang 315211, P. R. China
| | - Jianbo Liu
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
| | - Lizhe Liu
- Jiangsu Key Laboratory for Nanotechnology and Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructures, Nanjing University, Nanjing, Jiangsu 210093, P. R. China
| | - Wei Tuo
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
| | - Huangtianzhi Zhu
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
| | - Shuai Lu
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518055, P. R. China
- College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou, Henan 450001, P. R. China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518055, P. R. China
| | - Peter J. Stang
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
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An insight into the vicarious nucleophilic substitution reaction of 2-nitro-5,10,15,20-tetraphenylporphyrin with p-chlorophenoxyacetonitrile: Synthesis and gas-phase fragmentation studies. ARAB J CHEM 2020. [DOI: 10.1016/j.arabjc.2020.04.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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6
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Cyclic metalloporphyrin dimers: Conformational flexibility, applications and future prospects. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213117] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Laurencin D, Yot PG, Gervais C, Guari Y, Clément S, Elkaim E, Paillet M, Cot D, Richeter S. Synthesis, characterization and modeling of self-assembled porphyrin nanorods. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424619501451] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Porphyrin nanorods were prepared by ion-association between free-base meso 5,10,15,20-tetrakis-(4-[Formula: see text]-methylpyridinium)porphyrin cations and tetraphenylborate anions. The nanorods have variable lengths (up to a few micrometers long) and diameters ([Formula: see text]50–500 nm). Their structure at the molecular level was elucidated by combining multinuclear solid state NMR spectroscopy, synchrotron X-ray powder diffraction and DFT calculations.
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Affiliation(s)
- Danielle Laurencin
- Institut Charles Gerhardt de Montpellier, ICGM, UMR 5253, CNRS UM ENSCM, 34095 Montpellier, France
| | - Pascal G. Yot
- Institut Charles Gerhardt de Montpellier, ICGM, UMR 5253, CNRS UM ENSCM, 34095 Montpellier, France
| | - Christel Gervais
- Laboratoire de Chimie de la Matière Condensée de Paris, LCMCP, UMR 7574, Sorbonne Université, Collège de France, 75005 Paris, France
| | - Yannick Guari
- Institut Charles Gerhardt de Montpellier, ICGM, UMR 5253, CNRS UM ENSCM, 34095 Montpellier, France
| | - Sébastien Clément
- Institut Charles Gerhardt de Montpellier, ICGM, UMR 5253, CNRS UM ENSCM, 34095 Montpellier, France
| | - Erik Elkaim
- Synchrotron SOLEIL, L’Orme des Merisiers Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Matthieu Paillet
- Laboratoire Charles Coulomb (L2C), Université de Montpellier, CNRS, Montpellier, France
| | - Didier Cot
- Institut Européen des Membranes, IEM, UMR 5635, Université Montpellier, ENSCM, CNRS, 34095 Montpellier, France
| | - Sébastien Richeter
- Institut Charles Gerhardt de Montpellier, ICGM, UMR 5253, CNRS UM ENSCM, 34095 Montpellier, France
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8
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Li F, Lindoy LF. Metalloligand Strategies for Assembling Heteronuclear Nanocages – Recent Developments. Aust J Chem 2019. [DOI: 10.1071/ch19279] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The use of metalloligands as building blocks for the assembly of metallo-organic cages has received increasing attention over the past two decades or so. In part, the popularity of this approach reflects its stepwise nature that lends itself to the predesigned construction of metallocages and especially heteronuclear metallocages. The focus of the present discussion is on the use of metalloligands for the construction of discrete polyhedral cages, very often incorporating heterometal ions as structural elements. The metalloligand approach uses metal-bound multifunctional ligand building blocks that display predesigned structural properties for coordination to a second metal ion such that the rational design and construction of both homo- and heteronuclear metal–organic cages are facilitated. The present review covers published literature in the area from early 2015 to early 2019.
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