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Cherif M, Brose U, Hirt MR, Ryser R, Silve V, Albert G, Arnott R, Berti E, Cirtwill A, Dyer A, Gauzens B, Gupta A, Ho HC, Portalier SMJ, Wain D, Wootton K. The environment to the rescue: can physics help predict predator-prey interactions? Biol Rev Camb Philos Soc 2024. [PMID: 38855988 DOI: 10.1111/brv.13105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 05/17/2024] [Accepted: 05/24/2024] [Indexed: 06/11/2024]
Abstract
Understanding the factors that determine the occurrence and strength of ecological interactions under specific abiotic and biotic conditions is fundamental since many aspects of ecological community stability and ecosystem functioning depend on patterns of interactions among species. Current approaches to mapping food webs are mostly based on traits, expert knowledge, experiments, and/or statistical inference. However, they do not offer clear mechanisms explaining how trophic interactions are affected by the interplay between organism characteristics and aspects of the physical environment, such as temperature, light intensity or viscosity. Hence, they cannot yet predict accurately how local food webs will respond to anthropogenic pressures, notably to climate change and species invasions. Herein, we propose a framework that synthesises recent developments in food-web theory, integrating body size and metabolism with the physical properties of ecosystems. We advocate for combination of the movement paradigm with a modular definition of the predation sequence, because movement is central to predator-prey interactions, and a generic, modular model is needed to describe all the possible variation in predator-prey interactions. Pending sufficient empirical and theoretical knowledge, our framework will help predict the food-web impacts of well-studied physical factors, such as temperature and oxygen availability, as well as less commonly considered variables such as wind, turbidity or electrical conductivity. An improved predictive capability will facilitate a better understanding of ecosystem responses to a changing world.
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Affiliation(s)
- Mehdi Cherif
- Aquatic Ecosystems and Global Change Research Unit, National Research Institute for Agriculture Food and the Environment, 50 avenue de Verdun, Cestas Cedex, 33612, France
| | - Ulrich Brose
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, 04103, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
| | - Myriam R Hirt
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, 04103, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
| | - Remo Ryser
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, 04103, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
| | - Violette Silve
- Aquatic Ecosystems and Global Change Research Unit, National Research Institute for Agriculture Food and the Environment, 50 avenue de Verdun, Cestas Cedex, 33612, France
| | - Georg Albert
- Department of Forest Nature Conservation, Georg-August-Universität, Büsgenweg 3, Göttingen, 37077, Germany
| | - Russell Arnott
- Sainsbury Laboratory, University of Cambridge, 47 Bateman Street, Cambridge, Cambridgeshire, CB2 1LR, UK
| | - Emilio Berti
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, 04103, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
| | - Alyssa Cirtwill
- Spatial Foodweb Ecology Group, Research Centre for Ecological Change (REC), Faculty of Biological and Environmental Sciences, University of Helsinki, P.O. Box 4 (Yliopistonkatu 3), Helsinki, 00014, Finland
| | - Alexander Dyer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, 04103, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
| | - Benoit Gauzens
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, 04103, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, Jena, 07743, Germany
| | - Anhubav Gupta
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, Zürich, 8057, Switzerland
| | - Hsi-Cheng Ho
- Institute of Ecology and Evolutionary Biology, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 106, Taiwan
| | - Sébastien M J Portalier
- Department of Mathematics and Statistics, University of Ottawa, STEM Complex, room 342, 150 Louis-Pasteur Pvt, Ottawa, Ontario, K1N 6N5, Canada
| | - Danielle Wain
- 7 Lakes Alliance, Belgrade Lakes, 137 Main St, Belgrade Lakes, ME, 04918, USA
| | - Kate Wootton
- School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand
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Hawkes LA, Davies P, Hall AE, Horton TW, Stamp T, Witt MJ, Sheehan EV. People behind the "pings"; limiting authorship threatens collaboration in telemetry. JOURNAL OF FISH BIOLOGY 2024; 104:1662-1666. [PMID: 38519854 DOI: 10.1111/jfb.15700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 02/09/2024] [Indexed: 03/25/2024]
Affiliation(s)
- L A Hawkes
- Faculty of Health and Life Sciences, University of Exeter, Exeter, UK
| | - P Davies
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
| | - A E Hall
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
| | - T W Horton
- Faculty of Environment, Society and Economy, University of Exeter, Penryn Campus, Penryn, UK
| | - T Stamp
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
| | - M J Witt
- Faculty of Health and Life Sciences, University of Exeter, Exeter, UK
- Faculty of Environment, Society and Economy, University of Exeter, Penryn Campus, Penryn, UK
| | - E V Sheehan
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
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Chambon R, Paillisson JM, Fournier-Sowinski J, Dugravot S. Agricultural habitat use and selection by a sedentary bird over its annual life cycle in a crop-depredation context. MOVEMENT ECOLOGY 2024; 12:26. [PMID: 38553766 PMCID: PMC10981352 DOI: 10.1186/s40462-024-00462-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 02/19/2024] [Indexed: 04/01/2024]
Abstract
BACKGROUND Modern agriculture has undoubtedly led to increasing wildlife-human conflicts, notably concerning bird damage in productive and attractive crops during some parts of the annual cycle. This issue requires utmost attention for sedentary birds that may impact agricultural crops at any stage of their annual life cycle. Reducing bird-human conflicts requires a better understanding of the relationship between bird foraging activity and the characteristics of agricultural areas, notably with respect to changes in food-resource availability and crop sensitivity across the year. METHODS We explored how GPS-tagged adult male western jackdaws- sedentary corvids- utilize agricultural areas throughout their annual cycle, in a context of crop depredation. More precisely, we described their daily occurrence distribution and the extent of habitat use and selection consistency with respect to landscape composition across time. RESULTS Jackdaws moved in the close agricultural surroundings of their urban nesting place over the year (< 2.5 km from the nest, on average). Daily occurrence distributions were restricted (< 2.2 km2), relatively centered on the nesting locality (distance between the daily occurrence centroid and the nest < 0.9 km), and rather spatially stable during each annual life-cycle period (overlap range: 63.4-76.1%). Their foraging patterns highlighted that they fed mainly in grasslands all year round, and foraged complementarily and opportunistically in maize (during sowing- coinciding with the first stages of the birds' breeding period) and cereal crops (during harvesting- their post-fledging period). CONCLUSIONS Our findings demonstrate the very limited space use by breeding male jackdaws which foraged preferentially in grasslands. We call for future investigations in other agricultural contexts and also considering non-breeders for extrapolation purposes.
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Affiliation(s)
- Rémi Chambon
- UMR 7208 - BOREA, MNHN, CNRS, UPMC, IRD, UC, UA, Université de Rennes, Rennes, France.
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Noda T, Koizumi T, Yukitake N, Yamamoto D, Nakaizumi T, Tanaka K, Okuyama J, Ichikawa K, Hara T. Animal-borne soundscape logger as a system for edge classification of sound sources and data transmission for monitoring near-real-time underwater soundscape. Sci Rep 2024; 14:6394. [PMID: 38493174 PMCID: PMC10944488 DOI: 10.1038/s41598-024-56439-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 03/06/2024] [Indexed: 03/18/2024] Open
Abstract
The underwater environment is filled with various sounds, with its soundscape composed of biological, geographical, and anthropological sounds. Our work focused on developing a novel method to observe and classify these sounds, enriching our understanding of the underwater ecosystem. We constructed a biologging system allowing near-real-time observation of underwater soundscapes. Utilizing deep-learning-based edge processing, this system classifies the sources of sounds, and upon the tagged animal surfacing, it transmits positional data, results of sound source classification, and sensor readings such as depth and temperature. To test the system, we attached the logger to sea turtles (Chelonia mydas) and collected data through a cellular network. The data provided information on the location-specific sounds detected by the sea turtles, suggesting the possibility to infer the distribution of specific species of organisms over time. The data showed that not only biological sounds but also geographical and anthropological sounds can be classified, highlighting the potential for conducting multi-point and long-term observations to monitor the distribution patterns of various sound sources. This system, which can be considered an autonomous mobile platform for oceanographic observations, including soundscapes, has significant potential to enhance our understanding of acoustic diversity.
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Affiliation(s)
| | | | | | | | | | - Kotaro Tanaka
- Japan Fisheries Science and Technology Association, Tokyo, Japan
- Ocean Policy Research Institute of the Sasakawa Peace Foundation, Tokyo, Japan
| | - Junichi Okuyama
- Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Okinawa, Japan
| | - Kotaro Ichikawa
- Field Science Education and Research Center, Kyoto University, Kyoto, Japan
| | - Takeshi Hara
- Japan Fisheries Science and Technology Association, Tokyo, Japan
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Gilmour KM, Daley MA, Egginton S, Kelber A, McHenry MJ, Patek SN, Sane SP, Schulte PM, Terblanche JS, Wright PA, Franklin CE. Through the looking glass: attempting to predict future opportunities and challenges in experimental biology. J Exp Biol 2023; 226:jeb246921. [PMID: 38059428 DOI: 10.1242/jeb.246921] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2023]
Abstract
To celebrate its centenary year, Journal of Experimental Biology (JEB) commissioned a collection of articles examining the past, present and future of experimental biology. This Commentary closes the collection by considering the important research opportunities and challenges that await us in the future. We expect that researchers will harness the power of technological advances, such as '-omics' and gene editing, to probe resistance and resilience to environmental change as well as other organismal responses. The capacity to handle large data sets will allow high-resolution data to be collected for individual animals and to understand population, species and community responses. The availability of large data sets will also place greater emphasis on approaches such as modeling and simulations. Finally, the increasing sophistication of biologgers will allow more comprehensive data to be collected for individual animals in the wild. Collectively, these approaches will provide an unprecedented understanding of 'how animals work' as well as keys to safeguarding animals at a time when anthropogenic activities are degrading the natural environment.
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Affiliation(s)
| | - Monica A Daley
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA
| | - Stuart Egginton
- School of Biomedical Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Almut Kelber
- Department of Biology, Lund University, 22362 Lund, Sweden
| | - Matthew J McHenry
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA
| | - Sheila N Patek
- Biology Department, Duke University, Durham, NC 27708, USA
| | - Sanjay P Sane
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bellary Road, Bangalore, Karnataka 560065, India
| | - Patricia M Schulte
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - John S Terblanche
- Center for Invasion Biology, Department of Conservation Ecology & Entomology, Stellenbosch University, Stellenbosch 7602, South Africa
| | - Patricia A Wright
- Department of Integrative Biology, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - Craig E Franklin
- School of the Environment, The University of Queensland, St. Lucia, Brisbane 4072, Australia
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Hodgson TM, Johnston ST, Ottobre M, Painter KJ. Intent matters: how flow and forms of information impact collective navigation. J R Soc Interface 2023; 20:20230356. [PMID: 37817582 PMCID: PMC10565391 DOI: 10.1098/rsif.2023.0356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 09/15/2023] [Indexed: 10/12/2023] Open
Abstract
The phenomenon of collective navigation has received considerable interest in recent years. A common line of thinking, backed by theoretical studies, is that collective navigation can improve navigation efficiency through the 'many-wrongs' principle, whereby individual error is reduced by comparing the headings of neighbours. When navigation takes place in a flowing environment, each individual's trajectory is influenced by drift. Consequently, a potential discrepancy emerges between an individual's intended heading and its actual heading. In this study, we develop a theoretical model to explore whether collective navigation benefits are altered according to the form of heading information transmitted between neighbours. Navigation based on each individual's intended heading is found to confer robust advantages across a wide spectrum of flows, via both a marked improvement in migration times and a capacity for a group to overcome flows unnavigable by solitary individuals. Navigation based on individual's actual headings is far less effective, only offering an improvement under highly favourable currents. For many currents, sharing actual heading information can even lead to journey times that exceed those of individual navigators.
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Affiliation(s)
- T. M. Hodgson
- Maxwell Institute for Mathematical Sciences and Mathematics Department, Heriot-Watt University, Edinburgh EH14 4AS, UK
| | - S. T. Johnston
- School of Mathematics and Statistics, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - M. Ottobre
- Maxwell Institute for Mathematical Sciences and Mathematics Department, Heriot-Watt University, Edinburgh EH14 4AS, UK
- School of Mathematics and Statistics, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - K. J. Painter
- DIST, Politecnico di Torino, Viale Pier Andrea Mattioli 39, 10125 Torino, Italy
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