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Yadav O, Kumar M, Mittal H, Yadav K, Seidel V, Ansari A. Theoretical exploration on structures, bonding aspects and molecular docking of α-aminophosphonate ligated copper complexes against SARS-CoV-2 proteases. Front Pharmacol 2022; 13:982484. [PMID: 36263127 PMCID: PMC9575937 DOI: 10.3389/fphar.2022.982484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/24/2022] [Indexed: 11/13/2022] Open
Abstract
Recent years have witnessed a growing interest in the biological activity of metal complexes of α-aminophosphonates. Here for the first time, a detailed DFT study on five α-aminophosphonate ligated mononuclear/dinuclear CuII complexes is reported using the dispersion corrected density functional (B3LYP-D2) method. The electronic structures spin densities, FMO analysis, energetic description of spin states, and theoretical reactivity behaviour using molecular electrostatic potential (MEP) maps of all five species are reported. All possible spin states of the dinuclear species were computed and their ground state S values were determined along with the computation of their magnetic coupling constants. NBO analysis was also performed to provide details on stabilization energies. A molecular docking study was performed for the five complexes against two SARS-CoV-2 coronavirus protein targets (PDB ID: 6LU7 and 7T9K). The docking results indicated that the mononuclear species had a higher binding affinity for the targets compared to the dinuclear species. Among the species investigated, species I showed the highest binding affinity with the SARS-CoV-2 Omicron protease. NPA charge analysis showed that the heteroatoms of model species III had a more nucleophilic nature. A comparative study was performed to observe any variations and/or correlations in properties among all species.
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Affiliation(s)
- Oval Yadav
- Department of Chemistry, Central University of Haryana, Mahendergarh, India
| | - Manjeet Kumar
- Department of Chemistry, Central University of Haryana, Mahendergarh, India
| | - Himanshi Mittal
- Department of Chemistry, Central University of Haryana, Mahendergarh, India
| | - Kiran Yadav
- Department of Chemistry, Central University of Haryana, Mahendergarh, India
| | - Veronique Seidel
- Natural Products Research Laboratory, Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom
- *Correspondence: Veronique Seidel, ; Azaj Ansari,
| | - Azaj Ansari
- Department of Chemistry, Central University of Haryana, Mahendergarh, India
- *Correspondence: Veronique Seidel, ; Azaj Ansari,
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Sarva S, Gundluru M, Cirandur SR. Facile Synthesis, Antioxidant and Antimicrobial Activities of Diethyl((4-isopropylphenyl)(substituted phenylamino)methyl)phosphonates. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222100243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Ali OM, Alotaibi MT, Zaki YH, Amer HH. Design, Synthesis, and Spectroscopic Studies of Some New α-Aminophosphonate Analogues Derived from 4-Hydroxybenzaldehyde with Special Reference to Anticancer Activity. Drug Des Devel Ther 2022; 16:2589-2599. [PMID: 35965965 PMCID: PMC9364703 DOI: 10.2147/dddt.s357998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 06/15/2022] [Indexed: 11/23/2022] Open
Abstract
Introduction As biological activity components, α-aminophosphonates and their moieties play important roles in medicinal chemistry. Alpha-phosphonic acids are significant α-amino acid counterparts. Due to its strong biological activity, this class of molecule has recently been discovered to have numerous medical applications. Results and Discussion A new class of α-aminophosphonates and arylidene derivatives was synthesized. Various spectroscopic and elemental analyses were used to confirm the prepared products. The produced materials were tested as anticancer against breast carcinoma cells and normal human cells (PBMC). Besides the analysis results, it was found that (7b, 4c, 5k, 6, 5a, 7c, 5f, 5b, and 5g) against MCF-7 line cells. As a reference anticancer drug, 5-fluorouracil was used. The anticancer activities showed that the compounds 7b, 4c, containing α-aminophosphonate and Schiff base groups, respectively, showed high inhibition activity against the MCF-7 cell line, with 94.32% and 92.45% inhibition compared to the inhibition by 5-FU with 96.02% inhibition. The results showed that the compounds 5k, 7b, 6, and 5a, respectively, had very low activity against normal human cells PBMC, with 12.77%, 13%, 13.13%, and 17.88% inhibition compared to the inhibition by 5-FU with 12.50% inhibition. The binding energy for non-bonding interactions between the ligand (studied compounds) and receptor, thymidylate synthase, was determined using molecular docking (pdb code: 1AN5). Conclusion α-aminophosphonate derivatives, arylidines, and disphosphonate derivatives derived from 4-hydroxybenzaldehyde were synthesized, purified, elucidated by spectroscopic analysis, and finally tested against carcinoma breast cancer to give high to moderate to low activity.
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Affiliation(s)
- Omar M Ali
- Department of Chemistry, University College of Turabah, Taif University, Taif, 21944, Saudi Arabia
| | - Mohammed T Alotaibi
- Department of Chemistry, University College of Turabah, Taif University, Taif, 21944, Saudi Arabia
| | - Yasser H Zaki
- Department of Chemistry, Faculty of Science, Beni-Suef University, Beni-Suef, 62514, Egypt
- Correspondence: Yasser H Zaki; Omar M Ali, Email ;
| | - Hamada H Amer
- Department of Animal Medicine and Infectious Diseases, Faculty of Veterinary Medicine, University of Sadat City, Sadat City, Egypt
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Koszelewski D, Kowalczyk P, Śmigielski P, Samsonowicz-Górski J, Kramkowski K, Wypych A, Szymczak M, Ostaszewski R. Relationship between Structure and Antibacterial Activity of α-Aminophosphonate Derivatives Obtained via Lipase-Catalyzed Kabachnik-Fields Reaction. MATERIALS 2022; 15:ma15113846. [PMID: 35683150 PMCID: PMC9182137 DOI: 10.3390/ma15113846] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/29/2022] [Accepted: 05/25/2022] [Indexed: 02/01/2023]
Abstract
We reported a new method dealing with the synthesis of novel pharmacologically relevant α-aminophosphonate derivatives via a lipase-catalyzed Kabachnik−Fields reaction with yields of up to 93%. The advantages of this protocol are excellent yields, mild reaction conditions, low costs, and sustainability. The developed protocol is applicable to a range of H-phosphites and organic amines, providing a wide substrate scope. A new class of α-aminophosphonate analogues possessing P-chiral centers was also synthesized. The synthesized compounds were characterized on the basis of their antimicrobial activities against E. coli. The impact of the various alkoxy groups on antimicrobial activity was demonstrated. The crucial role of the substituents, located at the aromatic rings in the phenylethyloxy and benzyloxy groups, on the inhibitory action against selected pathogenic E. coli strains was revealed. The observed results are especially important because of increasing resistance of bacteria to various drugs and antibiotics.
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Affiliation(s)
- Dominik Koszelewski
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland; (P.Ś.); (J.S.-G.)
- Correspondence: (D.K.); (P.K.); Tel.: +48-22-3432012 (D.K.); +48-22-765-33-01 (P.K.)
| | - Paweł Kowalczyk
- Department of Animal Nutrition, The Kielanowski Institute of Animal Physiology and Nutrition, Polish Academy of Sciences, Instytucka 3, 05-110 Jabłonna, Poland;
- Correspondence: (D.K.); (P.K.); Tel.: +48-22-3432012 (D.K.); +48-22-765-33-01 (P.K.)
| | - Paweł Śmigielski
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland; (P.Ś.); (J.S.-G.)
| | - Jan Samsonowicz-Górski
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland; (P.Ś.); (J.S.-G.)
| | - Karol Kramkowski
- Department of Physical Chemistry, Medical University of Bialystok, Kilińskiego 1 Str., 15-089 Białystok, Poland;
| | - Aleksandra Wypych
- Centre for Modern Interdisciplinary Technologies Nicolaus Copernicus University in Torun ul. Wileńska 4, 87-100 Toruń, Poland;
| | - Mateusz Szymczak
- Department of Molecular Virology, Institute of Microbiology, Faculty of Biology, University of 7 Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland;
| | - Ryszard Ostaszewski
- Department of Animal Nutrition, The Kielanowski Institute of Animal Physiology and Nutrition, Polish Academy of Sciences, Instytucka 3, 05-110 Jabłonna, Poland;
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El Khalfi B, Addoum B, Harrati S, Elmakssoudi A, Soukri A. Synthesis, in silico studies and antibacterial assessment of α-amino phosphonates derivatives. BIONATURA 2021. [DOI: 10.21931/rb/2021.06.03.17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
The widespread of multi-resistant strains due to the lack of specific treatment and the propagation of infectious diseases requires all resources to remedy this scourge. This study is therefore aimed to assess the antibacterial activity of four synthetic α-Aminophosphonate 4(a-d). Methods: Firstly, α-Aminophosphonate has been synthesized and characterized, then molecular docking of these compounds 4(a-d) into the active binding site of Escherichia coli MurB enzyme (PDB Id: 1MBT) was performed to gain a comprehensive understanding of their biological activity. These compounds have been subjected to in vitro antibacterial screening against three multi-resistant strains E. coli, S. aureus, and L. monocytogenes. These compounds showed crucial antibacterial behavior against all studied strains. Thus, their docking estimation supported the in vitro results and showed that the 4c derivative has considerable binding energy towards the active site of Escherichia coli MurB. These findings provide critical information for the exploration of α-amino phosphonates as novel antibacterial agents.
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Affiliation(s)
- Bouchra El Khalfi
- Laboratory of Physiopathology, Genetics, Molecular and Biotechnology (PGMB), Department of Biology, Faculty of Sciences Aïn Chock, Research Center of Health and Biotechnology, Hassan II University of Casablanca, B.P 5366 Maarif, Casablanca, Morocco
| | - Boutaina Addoum
- Laboratory of Physiopathology, Genetics, Molecular and Biotechnology (PGMB), Department of Biology, Faculty of Sciences Aïn Chock, Research Center of Health and Biotechnology, Hassan II University of Casablanca, B.P 5366 Maarif, Casablanca, Morocco
| | - Suhayla Harrati
- Laboratory of Physiopathology, Genetics, Molecular and Biotechnology (PGMB), Department of Biology, Faculty of Sciences Aïn Chock, Research Center of Health and Biotechnology, Hassan II University of Casablanca, B.P 5366 Maarif, Casablanca, Morocco
| | - Abdelhakim Elmakssoudi
- Laboratory of Organic Synthesis, Extraction, and Valorization, Department of Chemistry, Faculty of Sciences Aïn Chock, Hassan II University of Casablanca, B.P 5366 Maarif, Casablanca, Morocco
| | - Abdelaziz Soukri
- Laboratory of Physiopathology, Genetics, Molecular and Biotechnology (PGMB), Department of Biology, Faculty of Sciences Aïn Chock, Research Center of Health and Biotechnology, Hassan II University of Casablanca, B.P 5366 Maarif, Casablanca, Morocco
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Kaur G, Shamim M, Bhardwaj V, Gupta VK, Banerjee B. Mandelic acid catalyzed one-pot three-component synthesis of α-aminonitriles and α-aminophosphonates under solvent-free conditions at room temperature. SYNTHETIC COMMUN 2020. [DOI: 10.1080/00397911.2020.1745844] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Gurpreet Kaur
- Department of Chemistry, Indus International University, Una, Himachal Pradesh, India
| | - Mussarat Shamim
- Department of Chemistry, Indus International University, Una, Himachal Pradesh, India
| | - Vaishali Bhardwaj
- Department of Chemistry, Indus International University, Una, Himachal Pradesh, India
| | - Vivek Kumar Gupta
- Post-Graduate Department of Physics, University of Jammu, Jammu, India
| | - Bubun Banerjee
- Department of Chemistry, Indus International University, Una, Himachal Pradesh, India
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Synthesis of novel α-aminophosphonates under microwave irradiation, biological evaluation as antiproliferative agents and apoptosis inducers. Med Chem Res 2019. [DOI: 10.1007/s00044-019-02436-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Kumar KS, Krishna BS, Reddy CB, Reddy MVN, Reddy CS. Solvent-free synthesis of α-aminophosphonates: Cellulose-SO 3 H as an efficient catalyst. ARAB J CHEM 2017. [DOI: 10.1016/j.arabjc.2012.09.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Wang X, Cai Y, Chen J, Verpoort F. A simple protocol for the synthesis of α-substituted phosphonates. PHOSPHORUS SULFUR 2016. [DOI: 10.1080/10426507.2016.1167056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Xing Wang
- Department of Chemical Engineering, School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan, China
- Laboratory of Organometallics, Catalysis and Ordered Materials, State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, Wuhan, China
| | - Yuan Cai
- Department of Chemical Engineering, School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan, China
- Laboratory of Organometallics, Catalysis and Ordered Materials, State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, Wuhan, China
| | - Jian Chen
- Department of Chemical Engineering, School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan, China
- Laboratory of Organometallics, Catalysis and Ordered Materials, State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, Wuhan, China
| | - Francis Verpoort
- Department of Chemical Engineering, School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan, China
- Laboratory of Organometallics, Catalysis and Ordered Materials, State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, Wuhan, China
- National Research Tomsk Polytechnic University, Tomsk, Russian Federation
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Ying A, Liu S, Yang J, Hu H. Synthesis of α-Amino Phosphonates under a Neat Condition Catalyzed by Multiple-Acidic Ionic Liquids. Ind Eng Chem Res 2014. [DOI: 10.1021/ie5025062] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Anguo Ying
- School of Pharmaceutical and Chemical Engineering, Taizhou University, Taizhou 318000, PR China
| | - Shuo Liu
- College of Chemistry, Nankai University, Tianjin 300071, PR China
| | - Jianguo Yang
- School of Pharmaceutical and Chemical Engineering, Taizhou University, Taizhou 318000, PR China
| | - Huanan Hu
- School of Pharmaceutical and Chemical Engineering, Taizhou University, Taizhou 318000, PR China
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