Characterization of plasmid pPO1 from the hyperacidophile Picrophilus oshimae

Multi-stress adaptive lifestyle of acidophiles enhances their robustness for biotechnological and environmental applications

Acidophiles are a group of organisms typically found in highly acidic environments such as acid mine drainage. These organisms have several physiological features that enable them to thrive in highly acidic environments (pH ≤3). Considering that both acid mine drainage and solfatara fields exhibit extreme and dynamic ecological conditions for acidophiles, it is crucial to gain deeper insights into the adaptive mechanisms employed by these unique organisms. The existing literature reveals a notable gap in understanding the multi-stress conditions confronting acidophiles and their corresponding coping mechanisms. Therefore, the current review aims to illuminate the intricacies of the metabolic lifestyles of acidophiles within these demanding habitats, exploring how their energy demands contribute to habitat acidification. In addition, the unique adaptive mechanisms employed by acidophiles were emphasized, especially the pivotal role of monolayer membrane-spanning lipids, and how these organisms effectively respond to a myriad of stresses. Beyond mere survival, understanding the adaptive mechanisms of these unique organisms could further enhance their use in some biotechnological and environmental applications. Lastly, this review explores the strategies used to engineer these organisms to promote their use in industrial applications.

Phosphorus in the Clouds of Venus: Potential for Bioavailability

Aerosol phase elements such as phosphorus (P), sulfur (S), and metals including iron (Fe) are essential nutrients that could help sustain potential biodiversity in the cloud deck of Venus. While the presence of S and Fe in the venusian cloud deck has been broadly discussed (Zasova et al., 1981; Krasnopolsky, 2012, 2013, 2016, 2017; Markiewicz et al., 2014), less attention has been given to the presence of P in the aerosols and its involvement in the multiphase chemistry of venusian clouds and potential sources of P deposition in the venusian atmosphere. A detailed characterization of phosphorus atmospheric chemistry in the cloud deck of Venus is crucial for understanding its solubility and bioavailability for potential venusian cloud microbiota (Schulze-Makuch et al., 2004; Grinspoon and Bullock, 2007; Limaye et al., 2018). We summarize our current understanding of the presence of P in the clouds of Venus and its role in a hypothetical atmospheric (bio)chemical cycle. The results of the VeGa lander measurements are put into perspective with regard to nutrient limitation for a potential biosphere in venusian clouds. Our work combines the results of the VeGa measurements and focuses on P as an inorganic nutrient component and its potential sources and chemical behavior as part of multiple transformations of atmospheric chemistry. The VeGa data indicate that a plentiful phosphorus layer exists within a layer that reaches into the lower venusian clouds and exceeds minimum P abundances for terrestrial microbial life. Extreme acidification of airborne phases in the atmosphere of Venus may facilitate P solubilization and its bioavailability for a potential ecosystem in venusian clouds. Further sampling and P abundance measurements in the atmosphere of Venus would improve our knowledge of P speciation and facilitate determination of a bioavailable fraction of P detected in venusian clouds. The previous results deserve further experimental and modeling analyses to diminish uncertainties and understand the rates of atmospheric deposition of P and its role in a potential venusian cloud ecosystem.

Plasmids from Euryarchaeota

Many plasmids have been described in Euryarchaeota, one of the three major archaeal phyla, most of them in salt-loving haloarchaea and hyperthermophilic Thermococcales. These plasmids resemble bacterial plasmids in terms of size (from small plasmids encoding only one gene up to large megaplasmids) and replication mechanisms (rolling circle or theta). Some of them are related to viral genomes and form a more or less continuous sequence space including many integrated elements. Plasmids from Euryarchaeota have been useful for designing efficient genetic tools for these microorganisms. In addition, they have also been used to probe the topological state of plasmids in species with or without DNA gyrase and/or reverse gyrase. Plasmids from Euryarchaeota encode both DNA replication proteins recruited from their hosts and novel families of DNA replication proteins. Euryarchaeota form an interesting playground to test evolutionary hypotheses on the origin and evolution of viruses and plasmids, since a robust phylogeny is available for this phylum. Preliminary studies have shown that for different plasmid families, plasmids share a common gene pool and coevolve with their hosts. They are involved in gene transfer, mostly between plasmids and viruses present in closely related species, but rarely between cells from distantly related archaeal lineages. With few exceptions (e.g., plasmids carrying gas vesicle genes), most archaeal plasmids seem to be cryptic. Interestingly, plasmids and viral genomes have been detected in extracellular membrane vesicles produced by Thermococcales, suggesting that these vesicles could be involved in the transfer of viruses and plasmids between cells.