1
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Bandyopadhyay K, Verma A, Pandey A, Walia R, Saha S. The crucial role of stability of intercalating agent for DNA binding studies in DMSO/water system. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 315:124265. [PMID: 38626674 DOI: 10.1016/j.saa.2024.124265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 04/02/2024] [Accepted: 04/06/2024] [Indexed: 04/18/2024]
Abstract
In recent years, extensive research has been directed towards understanding the interactions between various zinc complexes with DNA, specifically delving into their intercalation and binding behaviors. The binding of zinc complexes to DNA is particularly intriguing due to their distinctive intercalating capabilities. This study unveils a remarkable phenomenon observed with a specific Zn complex, ([B-Zn-N3], where B is a Schiff base ligand), during DNA intercalation investigations in the popular DMSO-Water binary solvent mixture. An unanticipated observation revealed time-dependent changes in the UV-visible absorption spectroscopic studies, coupled with the existence of an isosbestic point. This observation questions the stability of the intercalating agent itself during the intercalation process. The emergence of a decomposed product during the intercalation study has been confirmed through various analytical techniques, including CHN analysis, MALDI mass, XPS, Raman spectroscopy, and Powder XRD. The change in the chemical species on intercalation is further substantiated by theoretical studies, adding depth to our understanding of the intricate dynamics at play during DNA intercalation with the [B-Zn-N3] complex in the DMSO-Water system.
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Affiliation(s)
- Krishanu Bandyopadhyay
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Abhineet Verma
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Ankita Pandey
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Rajat Walia
- Department of Chemistry, City University of Hong Kong, Hong Kong SAR
| | - Satyen Saha
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India.
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2
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Jayasri B, Rajeshwari K, Vasantha P, Anantha Lakshmi PV. Ternary Cobalt (II)-Metformin-Glycine/Histidine/Proline Complexes: Multispectroscopic DNA, HSA, and BSA Interaction and Cytotoxicity Studies. Biol Trace Elem Res 2023; 201:5481-5499. [PMID: 36856949 DOI: 10.1007/s12011-023-03606-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/21/2023] [Indexed: 03/02/2023]
Abstract
The synthesized water-soluble ternary complexes [Co(met)(gly)(Cl)2] (1), [Co(met)(hist)(Cl)2] (2), and [Co(met)(pro)(Cl)2] (3), (met = metformin, gly = glycine, hist = histidine, and pro = proline) were evaluated using spectro-analytical techniques, and the stereochemistry of the complexes was determined to be octahedral. UV-Vis absorption, competitive DNA-binding experiments using ethidium bromide (EB) by fluorescence, fluorescence emission studies, viscosity studies, and gel electrophoresis techniques were all employed to explore the binding characteristics of the cobalt (II) complexes with CT-DNA and groove-binding mechanism established. The salt-dependent association of the complexes to CT-DNA was investigated using UV-Vis spectrophotometric analysis. The association of the cobalt (II) complexes with BSA and HSA was explored by utilizing UV-Vis absorption and fluorescence spectroscopy approaches. The findings show that the complexes exhibit adequate capacity to quench BSA and HSA fluorescence and that the binding response is mostly a static quenching mechanism. The cytotoxicity of the complexes has also been appraised with the human breast adenocarcinoma cell lines (MCF-7) and (MDA-MB-231) by utilizing the MTT assay. For each cell line, the IC50 values were computed. In both cell lines, all the complexes were active.
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Affiliation(s)
- B Jayasri
- Department of Chemistry, University College of Science, Osmania University, Hyderabad, India, 500007
| | - K Rajeshwari
- Department of Chemistry, University College of Science, Osmania University, Hyderabad, India, 500007
| | - P Vasantha
- Department of Chemistry, University College of Science, Osmania University, Hyderabad, India, 500007
| | - P V Anantha Lakshmi
- Department of Chemistry, University College of Science, Osmania University, Hyderabad, India, 500007.
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3
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Das R, Paira P. GSH resistant, luminescent 2-(pyren-1-yl)-1 H-imidazo[4,5- f][1,10]phenanthroline-based Ru(II)/Ir(III)/Re(I) complexes for phototoxicity in triple-negative breast cancer cells. Dalton Trans 2023; 52:15365-15376. [PMID: 37493615 DOI: 10.1039/d3dt01667f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2023]
Abstract
Selective chemotherapeutic strategies necessitate the emergence of a photosensitive scaffold to abate the nuisance of cancer. In the current context, photo-activated chemotherapy (PACT) has, therefore, appeared to be very effective to vanquish the vehemence of triple-negative breast cancer (TNBC). Metal complexes have been identified to act well against cancer cell microenvironment (high GSH content, low pH, and hypoxia), and thus they have been employed in the treatment of various types of cancer. As TNBC is very challenging to treat owing to its poor prognosis, lack of a specific target, high chance of relapse, and strong metastatic ability, herein we have aspired to design GSH-resistant phototoxic Ru(II)/Ir(III)/Re(I) based pyrene imidazophenathroline complexes to selectively avert the triple-negative breast cancer. The application of complexes, [RuL], [IrL], and [ReL] in the absence and in the presence of GSH against MDA-MB-231TNBC cells, has revealed that they are very active upon irradiation of visible light compared to dark due to the creation of copious singlet oxygen (1O2) as reactive oxygen species (ROS). Among three synthesized complexes, [IrL] has shown outstanding potency (IC50 = 3.70 in the absence of GSH and IC50 = 3.90 in the presence of GSH). Also, the complex, [IrL] is capable of interacting with DNA with the highest binding constant (Kb = 0.023 × 106 M-1) along with higher protein binding affinity (KBSA = 0.0321 × 106 M-1). Here, it has been unveiled that all the complexes have been entitled to involve DNA covalent interaction through the available sites of both adenine and guanine bases.
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Affiliation(s)
- Rishav Das
- Department of Chemistry, School of advanced sciences, Vellore Institute of Technology, Vellore-632014, Tamilnadu, India.
| | - Priyankar Paira
- Department of Chemistry, School of advanced sciences, Vellore Institute of Technology, Vellore-632014, Tamilnadu, India.
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4
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Shereef HA, Moemen YS, Elshami FI, El-Nahas AM, Shaban SY, van Eldik R. DNA Binding and Cleavage, Stopped-Flow Kinetic, Mechanistic, and Molecular Docking Studies of Cationic Ruthenium(II) Nitrosyl Complexes Containing “NS4” Core. Molecules 2023; 28:molecules28073028. [PMID: 37049792 PMCID: PMC10095794 DOI: 10.3390/molecules28073028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 03/24/2023] [Accepted: 03/24/2023] [Indexed: 03/31/2023] Open
Abstract
This work aimed to evaluate in vitro DNA binding mechanistically of cationic nitrosyl ruthenium complex [RuNOTSP]+ and its ligand (TSPH2) in detail, correlate the findings with cleavage activity, and draw conclusions about the impact of the metal center. Theoretical studies were performed for [RuNOTSP]+, TSPH2, and its anion TSP−2 using DFT/B3LYP theory to calculate optimized energy, binding energy, and chemical reactivity. Since nearly all medications function by attaching to a particular protein or DNA, the in vitro calf thymus DNA (ctDNA) binding studies of [RuNOTSP]+ and TSPH2 with ctDNA were examined mechanistically using a variety of biophysical techniques. Fluorescence experiments showed that both compounds effectively bind to ctDNA through intercalative/electrostatic interactions via the DNA helix’s phosphate backbone. The intrinsic binding constants (Kb), (2.4 ± 0.2) × 105 M−1 ([RuNOTSP]+) and (1.9 ± 0.3) × 105 M−1 (TSPH2), as well as the enhancement dynamic constants (KD), (3.3 ± 0.3) × 104 M−1 ([RuNOTSP]+) and (2.6 ± 0.2) × 104 M−1 (TSPH2), reveal that [RuNOTSP]+ has a greater binding propensity for DNA compared to TSPH2. Stopped-flow investigations showed that both [RuNOTSP]+ and TSPH2 bind through two reversible steps: a fast second-order binding, followed by a slow first-order isomerization reaction via a static quenching mechanism. For the first and second steps of [RuNOTSP]+ and TSPH2, the detailed binding parameters were established. The total binding constants for [RuNOTSP]+ (Ka = 43.7 M−1, Kd = 2.3 × 10−2 M−1, ΔG0 = −36.6 kJ mol−1) and TSPH2 (Ka = 15.1 M−1, Kd = 66 × 10−2 M, ΔG0 = −19 kJ mol−1) revealed that the relative reactivity is approximately ([RuNOTSP]+)/(TSPH2) = 3/1. The significantly negative ΔG0 values are consistent with a spontaneous binding reaction to both [RuNOTSP]+ and TSPH2, with the former being very favorable. The findings showed that the Ru(II) center had an effect on the reaction rate but not on the mechanism and that the cationic [RuNOTSP]+ was a more highly effective DNA binder than the ligand TSPH2 via strong electrostatic interaction with the phosphate end of DNA. Because of its higher DNA binding affinity, cationic [RuNOTSP]+ demonstrated higher cleavage efficiency towards the minor groove of pBR322 DNA via the hydrolytic pathway than TSPH2, revealing the synergy effect of TSPH2 in the form of the complex. Furthermore, the mode of interaction of both compounds with ctDNA has also been supported by molecular docking.
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Affiliation(s)
- Hadeer A. Shereef
- Chemistry Department, Faculty of Science, Menoufia University, Shebin El-Kom 32512, Egypt
- Clinical Pathology Department, University Hospital, Menoufia University, Shebin El-Kom 32512, Egypt
| | - Yasmine S. Moemen
- Clinical Pathology Department, National Liver Institute, Menoufia University, Shebin El-Kom 32512, Egypt
| | - Fawzia I. Elshami
- Chemistry Department, Faculty of Science, Kafrelsheikh University, Kafrelsheikh 33516, Egypt
| | - Ahmed M. El-Nahas
- Chemistry Department, Faculty of Science, Menoufia University, Shebin El-Kom 32512, Egypt
| | - Shaban Y. Shaban
- Chemistry Department, Faculty of Science, Kafrelsheikh University, Kafrelsheikh 33516, Egypt
- Correspondence: (S.Y.S.); (R.v.E.)
| | - Rudi van Eldik
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, 91058 Erlangen, Germany
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, 87-100 Torun, Poland
- Correspondence: (S.Y.S.); (R.v.E.)
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Asim S, Mansha A, Aslam S, Shahzad A. Study of Interactions Between 3-benzoyl-4-hydroxy-2-methyl-2H-1, 2-benzothiazine and Human DNA by Theoretical, Spectroscopic and Viscometric measurements. J Fluoresc 2023; 33:311-326. [PMID: 36414920 DOI: 10.1007/s10895-022-03045-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 10/15/2022] [Indexed: 11/24/2022]
Abstract
From the last few years mode of interactions between drugs and DNA is an attractive research area as it bridges chemistry, molecular biology and medicinal science. Interactions between small heterocyclic molecules and human DNA is a noteworthy feature in pharmacology for investigation of drugs mechanism and designing of more effective and target specific drugs with fewer side effects. The present research work focuses on the theoretical investigations of 3-benzoyl-4-hydroxy-2-methyl-2H-1, 2-benzothiazine (SASA) by using Gaussian (16 W) software to predict optimized geometry, HOMO-LUMO gap, bond length, bond angle, dihedral angle, electronic and vibrational spectra. Possible reaction site observed in SASA was C7, C9 and C18 as these atoms show maximum charge density. Later the interactions of SASA with human DNA was explored spectroscopic investigations and viscometric investigations at physiological buffers of pH of 4.7 (stomach pH) and 7.4 (blood pH) respectively. Maximum absorbance between SASA-DNA complex was observed in buffer solution of pH 3.4 at wavelength of 370 nm, whereas at 7.4 has maximim absorbance between. Spectroscopic results reflects the bathochromic and hyperchromic shift succeeding the addition of human DNA. During viscosity measurement, intercalation and electrostatic mode of interaction were detected at low and high concentration of drug in solution respectively. Increase in the value of rate constant was observed with the increase in concentration of drug. Larger values of rate constant were observed at pH 7.4 in comparison to pH 3.5. Rate constant, thermodynamic parameters and viscometric analysis prefers the intake of SASA via blood.
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Affiliation(s)
- Sadia Asim
- Department of Chemistry, Government College Women University, Faisalabad, Pakistan.
| | - Asim Mansha
- Department of Chemistry, Government College University, Faisalabad, Pakistan
| | - Sana Aslam
- Department of Chemistry, Government College Women University, Faisalabad, Pakistan
| | - Alina Shahzad
- Department of Chemistry, Government College Women University, Faisalabad, Pakistan
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6
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Lim RRX, Ang WL, Ambrosi A, Sofer Z, Bonanni A. Electroactive nanocarbon materials as signaling tags for electrochemical PCR. Talanta 2022; 245:123479. [DOI: 10.1016/j.talanta.2022.123479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 04/08/2022] [Accepted: 04/10/2022] [Indexed: 11/15/2022]
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7
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Das M, Mukherjee S, Islam MM, Choudhuri I, Bhattacharyya N, Samanta BC, Dutta B, Maity T. Response of Ancillary Azide Ligand in Designing a 1D Copper(II) Polymeric Complex along with the Introduction of High DNA- and HAS-Binding Efficacy, Leading to Impressive Anticancer Activity: A Compact Experimental and Theoretical Approach. ACS OMEGA 2022; 7:23276-23288. [PMID: 35847281 PMCID: PMC9281303 DOI: 10.1021/acsomega.2c01403] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
A new versatile azide-bridged polymeric Cu(II) complex, namely, [Cu(L)(μ1,3-N3)]∞ (1), was synthesized utilizing an N,N,O-donor piperidine-based Schiff base ligand (E)-4-bromo-2-((2-(-1-yl)imino)methyl)phenol (HL), obtained via the condensation reaction of 1-(2-aminoethyl) piperidine and 5-bromo salicylaldehyde. The single-crystal X-ray diffraction analysis reveals that complex 1 consists of an end-to-end azido-bridged polymeric network, which is further rationalized with the help of a density functional theory (DFT) study. After routine characterization with a range of physicochemical studies, complex 1 is exploited to evaluate its biomedical potential. Initially, theoretical inspection with the help of a molecular docking study indicated the ability of complex 1 to effectively bind with macromolecules such as DNA and the human serum albumin (HSA) protein. The theoretical aspect was further verified by adopting several spectroscopic techniques. The electronic absorption spectroscopic analysis indicates a remarkable binding efficiency of Complex 1 with both DNA and HSA. The notable fluorescence intensity reduction of the ethidium bromide (EtBr)-DNA adduct, 4',6-diamidino-2-phenylindole (DAPI)-DNA adduct, and HSA after the gradual addition of complex 1 authenticates its promising binding potential with the macromolecules. The retention of the canonical B form of DNA and α form of HSA during the association of complex 1 was confirmed by implementing a circular dichroism spectral study. The association ability of complex 1 with macromolecules further inspired us to inspect its impact on different cell lines such as HeLa (cervical cancer cell), PA1 (ovarian cancer cell), and HEK (normal cell). The dose-dependent and time-dependent in vitro 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay suggests an effective antiproliferative property of complex 1 with low toxicity toward the normal cell line. Finally, the anticancer activity of complex 1 toward carcinoma cell lines was analyzed by nuclear and cellular staining techniques, unveiling the cell death mechanism.
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Affiliation(s)
- Manik Das
- Department
of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur, Contai 721404, India
| | - Somali Mukherjee
- School
of Chemical Sciences, Indian Association
for the Cultivation of Science, Jadavpur, Kolkata 700032, West Bengal, India
| | - Md. Maidul Islam
- Department
of Chemistry, Aliah University, Kolkata 700064, India
| | - Indranil Choudhuri
- Department
of Chemistry, Panskura Banamali College, Panskura 721152, India
| | | | - Bidhan Chandra Samanta
- Department
of Chemistry, Mugberia Gangadhar Mahavidyalaya, Purba Medinipur 721425, India
| | - Basudeb Dutta
- Department
of Chemical Science, IISER Kolkata, Mohanpur, Kolkata 741246, India
| | - Tithi Maity
- Department
of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur, Contai 721404, India
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8
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Synthesis of 4-((4-(4-nitrophenoxy)phenyl)diazenyl)benzene-1,3-benzoate:Experimental, DFT and, DNA binding investigation through spectral and molecular docking studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.132250] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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9
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Fouad R, Shebl M, Saif M, Gamal S. Novel copper nano-complex based on tetraazamacrocyclic backbone: Template synthesis, structural elucidation, cytotoxic, DNA binding and molecular docking studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.132021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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10
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Kordestani N, Abas E, Grasa L, Alguacil A, Scalambra F, Romerosa A. The Significant Influence of a Second Metal on the Antiproliferative Properties of the Complex [Ru(η 6 -C 10 H 14 )(Cl 2 )(dmoPTA)]. Chemistry 2021; 28:e202103048. [PMID: 34806242 PMCID: PMC9299940 DOI: 10.1002/chem.202103048] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Indexed: 12/16/2022]
Abstract
Complexes [Ru(η6−C10H14)(Cl2)(HdmoPTA)](OSO2CF3) (1), [Ru(η6−C10H14)(Cl2)(dmoPTA)] (2) and [Ru(η6−C10H14)(Cl2)‐μ‐dmoPTA‐1κP:2κ2N,N’‐MCl2] (M=Zn (3), Co (4), Ni (5), dmoPTA=3,7‐dimethyl‐1,3,7‐triaza‐5‐phosphabicyclo[3.3.1]nonane) have been synthesized and characterized by elemental analysis and spectroscopic techniques. The crystal structures of 1, 3 and 5 were obtained by single‐crystal X‐ray diffraction. The antiproliferative activity of the complexes was evaluated against colon cancer cell line Caco‐2/TC7 by using the MTT protocol. The monometallic ruthenium complexes 1 and 2 were found to be inactive, but the bimetallic complexes 3, 4 and 5 display an increased activity (IC503: 9.07±0.27, 4: 5.40±0.19, 5: 7.15±0.30 μM) compared to cisplatin (IC50=45.6±8.08 μM). Importantly, no reduction in normal cell viability was observed in the presence of the complexes. Experiments targeted to obtain information on the possible action mechanism of the complexes, such as cell cycle, ROS and gene expression studies, were performed. The results showed that the complexes display different properties and action mechanism depending on the nature of metal, M, bonded to the CH3NdmoPTA atoms.
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Affiliation(s)
- Nazanin Kordestani
- Área de Química Inorgánica-CIESOL Facultad de CienciasUniversidad de AlmeríaCarr. Sacramento, s/n04120La Cañada, AlmeríaSpain
| | - Elisa Abas
- Departamento de Farmacología, Fisiología y Medicina Legal y Forense Facultad de VeterinariaUniversidad de ZaragozaMiguel Servet, 17750013ZaragozaSpain
| | - Laura Grasa
- Departamento de Farmacología, Fisiología y Medicina Legal y Forense Facultad de VeterinariaUniversidad de ZaragozaMiguel Servet, 17750013ZaragozaSpain
- Instituto de Investigación Sanitaria de Aragón (IIS Aragón)San Juan Bosco, 1350009ZaragozaSpain
- Instituto Agroalimentario de Aragón -IA2-Universidad de Zaragoza–CITA)Miguel Servet, 17750013ZaragozaSpain
| | - Andres Alguacil
- Área de Química Inorgánica-CIESOL Facultad de CienciasUniversidad de AlmeríaCarr. Sacramento, s/n04120La Cañada, AlmeríaSpain
| | - Franco Scalambra
- Área de Química Inorgánica-CIESOL Facultad de CienciasUniversidad de AlmeríaCarr. Sacramento, s/n04120La Cañada, AlmeríaSpain
| | - Antonio Romerosa
- Área de Química Inorgánica-CIESOL Facultad de CienciasUniversidad de AlmeríaCarr. Sacramento, s/n04120La Cañada, AlmeríaSpain
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Synthesis, X-ray, Hirshfeld surface analysis, exploration of DNA binding, urease enzyme inhibition and anticancer activities of novel adamantane-naphthyl thiourea conjugate. Bioorg Chem 2021; 109:104707. [PMID: 33639362 DOI: 10.1016/j.bioorg.2021.104707] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 12/10/2020] [Accepted: 01/27/2021] [Indexed: 01/02/2023]
Abstract
1-(adamantane-1-carbonyl-3-(1-naphthyl)) thiourea (C22H24N2OS (4), was synthesized by the reaction of freshly prepared adamantane-1-carbonyl chloride from corresponding acid (3) with ammonium thiocyanate in 1:1 M ratio in dry acetone to afford the adamantane-1-carbonyl isothiocyanate (2) in situ followed by treatment with 1-naphthyl amine (3). The structure was established by elemental analyses, FTIR, 1H, 13C NMR and mass spectroscopy. The molecular and crystal structure were determined by single crystal X-ray analysis. It belongs to triclinic system P - 1 space group with a = 6.7832(5) Å, b = 11.1810(8) Å, c = 13.6660(10) Å, α = 105.941(6)°, β = 103.730(6)°, γ = 104.562(6)°, Z = 2, V = 910.82(11) Å3. The naphthyl group is almost planar. In the crystal structure, intermolecular CH···O hydrogen bonds link the molecules into centrosymmetric dimers, enclosing R22(14) ring motifs, while the intramolecular NH···O hydrogen bonds enclose S(6) ring motifs, in which they may be effective in the stabilization of the structure. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H … H (59.3%), H … C/C … H (19.8%) and H … S/S … H (10.1%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. DFT, molecular docking and urease inhibition studies revealed stability and electron withdrawing nature of 4 as compared to DNA base pairs and residues of urease. The DNA binding results from docking, UV- visible spectroscopy, and viscosity studies indicated significant binding of 4 with the DNA via intercalation and groove binding. Further investigation of the compound was done on hepatocellular carcinoma; Huh-7 cell line as well as normal human embryonic kidney; Hek-293 cell line. The compound showed significant cytotoxic activity against Huh-7 cells in comparison to normal Hek-293 cells indicating selective cytotoxicity towards cancer cells.
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12
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Das M, Mukherjee S, Brandao P, Seth SK, Giri S, Mati SS, Samanta BC, Laha S, Maity T. Active Bromoaniline-Aldehyde Conjugate Systems and Their Complexes as Versatile Sensors of Multiple Cations with Logic Formulation and Efficient DNA/HSA-Binding Efficacy: Combined Experimental and Theoretical Approach. ACS OMEGA 2021; 6:3659-3674. [PMID: 33585746 PMCID: PMC7876678 DOI: 10.1021/acsomega.0c05189] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Accepted: 01/11/2021] [Indexed: 05/12/2023]
Abstract
Two fluorescence active bromoaniline-based Schiff base chemosensors, namely, (E)-4-bromo-2-(((4-bromophenyl)imino)methyl)phenol (HL1 ) and (E)-2-(((4-bromophenyl)imino)methyl)phenol (HL2 ), have been employed for the selective and notable detection of Cu2+ and Zn2+ ions, respectively, with the simultaneous formation of two new metal complexes [Cu(L1)2] (1) and [Zn(L2)2] (2). X-ray single crystal analyses indicate that complexes 1 and 2 are tetra-coordinated systems with substantial CH...π/π...π stacking interactions in the solid-state crystal structures. These two complexes are exploited for the next step detection of Al3+ and Hg2+ where complex 2 exhibits impressive results via turn-off fluorescence quenching in (DMSO/H2O) HEPES buffer medium. The sensing phenomena are optimized by UV-vis spectral analyses as well as theoretical calculations (density functional theory and time-dependent density functional theory). The combined detection phenomena of the ligand (HL2 ) and complex 2 are exclusively utilized for the first time to construct a molecular memory device, intensifying their multisensoric properties. Furthermore, the DNA- and human serum albumin (HSA)-binding efficacies of these two complexes are examined by adopting electronic and fluorometric titration methods. Complex 2 shows a higher DNA-binding ability in comparison with complex 1, whereas in the case of HSA, the reverse situation is observed. Finally, the binding modes of both the complexes with DNA and HSA have been investigated through molecular docking studies, suggesting good agreement with the experimental results.
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Affiliation(s)
- Manik Das
- Department
of Chemistry, P. K. College, Contai, Purba Medinipur, West Bengal 721404, India
| | - Somali Mukherjee
- Department
of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Paula Brandao
- Departamento
de Química/CICEC, Universidade de
Aveiro, Aveiro, 3810-193, Portugal
| | | | | | - Soumya Sundar Mati
- Department
of Chemistry, Government General Degree
College, Keshiary 721135, West Bengal India
| | - Bidhan Chandra Samanta
- Department
of Chemistry, Mugberia Gangadhar Mahavidyalaya, Purba Medinipur 721425, West Bengal, India
| | | | - Tithi Maity
- Department
of Chemistry, P. K. College, Contai, Purba Medinipur, West Bengal 721404, India
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13
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Shahabadi N, Razlansari M. Insight into the binding mechanism of macrolide antibiotic; erythromycin to calf thymus DNA by multispectroscopic and computational approaches. J Biomol Struct Dyn 2021; 40:6171-6182. [PMID: 33525995 DOI: 10.1080/07391102.2021.1877821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
In the present study, the interactions between Erythromycin drug and calf thymus deoxyribonucleic acid (ct-DNA) were explored by multi spectroscopic techniques (UV-Visible, fluorescence, circular dichroism spectroscopies), viscosity, molecular docking simulation, and atomic force microscopy (AFM). In addition, the values of binding constant were calculated by the UV-Visible and fluorescence spectroscopy. Competitive fluorescence study with methylene blue (MB), acridine orange (AO), and Hoechst 33258 were indicated that the Erythromycin drug could displace the DNA-bound Hoechst, which displays the strong competition of Erythromycin with Hoechst to interact with the groove binding site of DNA. In addition, the observed complexes in AFM analysis comprise the chains of ct-DNA and Erythromycin with an average size of 314.05 nm. The results of thermodynamic parameter calculations (ΔS° = -332.103 ± 14 J mol-1 K-1 and ΔH° = -115.839 ± 0.02 kJ mol-1) approved the critical role of van der Waals forces and hydrogen bonds in the complexation of Erythromycin-DNA. Fluorescence spectroscopy results demonstrate the existence of a static enhancement mechanism in the interaction of Erythromycin-DNA. According to the obtained results, Erythromycin drug interacts with the major groove of ct-DNA. These consequences were further supported by the molecular docking study, and it could be determined that DNA-Erythromycin docked model was in a rough correlation with our experimental results.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Nahid Shahabadi
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran.,Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Mahtab Razlansari
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran
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14
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Mat Zaid MH, Che-Engku-Chik CEN, Yusof NA, Abdullah J, Othman SS, Issa R, Md Noh MF, Wasoh H. DNA Electrochemical Biosensor Based on Iron Oxide/Nanocellulose Crystalline Composite Modified Screen-Printed Carbon Electrode for Detection of Mycobacterium tuberculosis. Molecules 2020; 25:E3373. [PMID: 32722334 PMCID: PMC7435410 DOI: 10.3390/molecules25153373] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 06/01/2020] [Accepted: 06/03/2020] [Indexed: 11/16/2022] Open
Abstract
Death from tuberculosis has resulted in an increased need for early detection to prevent a tuberculosis (TB) epidemic, especially in closed and crowded populations. Herein, a sensitive electrochemical DNA biosensor based on functionalized iron oxide with mercaptopropionic acid (MPA-Fe3O4) nanoparticle and nanocellulose crystalline functionalized cetyl trimethyl ammonium bromide (NCC/CTAB) has been fabricated for the detection of Mycobacterium tuberculosis (MTB). In this study, a simple drop cast method was applied to deposit solution of MPA-Fe3O4/NCC/CTAB onto the surface of the screen-printed carbon electrode (SPCE). Then, a specific sequence of MTB DNA probe was immobilized onto a modified SPCE surface by using the 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide/N-hydroxysuccinimide (EDC/NHS) coupling mechanism. For better signal amplification and electrochemical response, ruthenium bipyridyl Ru(bpy)32+ was assigned as labels of hybridization followed by the characteristic test using differential pulse voltammetry (DPV). The results of this biosensor enable the detection of target DNA until a concentration as low as 7.96 × 10-13 M with a wide detection range from 1.0 × 10-6 to 1.0 × 10-12 M. In addition, the developed biosensor has shown a differentiation between positive and negative MTB samples in real sampel analysis.
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Affiliation(s)
- Mohd Hazani Mat Zaid
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.H.M.Z.); (N.A.Y.); (J.A.)
- Department of chemical sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
| | - Che Engku Noramalina Che-Engku-Chik
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Malaysia;
- Institute of Advanced Technology (ITMA), Universiti Putra Malaysia, Serdang 43400, Malaysia
| | - Nor Azah Yusof
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.H.M.Z.); (N.A.Y.); (J.A.)
- Department of chemical sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
| | - Jaafar Abdullah
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.H.M.Z.); (N.A.Y.); (J.A.)
- Department of chemical sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
| | - Siti Sarah Othman
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Rahizan Issa
- Bacteriology Unit, Infectious Disease Research Centre, Institute for Medical Research, Jalan Pahang, Kuala Lumpur 50588, Malaysia;
| | - Mohd Fairulnizal Md Noh
- Cardiovascular Diabetes and Nutrition Research Centre, Institute for Medical Research, Jalan Pahang, Kuala Lumpur 50588, Malaysia;
| | - Helmi Wasoh
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Malaysia;
- Institute of Advanced Technology (ITMA), Universiti Putra Malaysia, Serdang 43400, Malaysia
- Halal Product Research Institute (IPPH), Universiti Putra Malaysia, Serdang 43400, Malaysia
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15
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Nanostructured Polyelectrolyte Complexes Based on Water-Soluble Thiacalix[4]Arene and Pillar[5]Arene: Self-Assembly in Micelleplexes and Polyplexes at Packaging DNA. NANOMATERIALS 2020; 10:nano10040777. [PMID: 32316551 PMCID: PMC7221682 DOI: 10.3390/nano10040777] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 04/14/2020] [Accepted: 04/15/2020] [Indexed: 01/27/2023]
Abstract
Controlling the self-assembly of polyfunctional compounds in interpolyelectrolyte aggregates is an extremely challenging task. The use of macrocyclic compounds offers new opportunities in design of a new generation of mixed nanoparticles. This approach allows creating aggregates with multivalent molecular recognition, improved binding efficiency and selectivity. In this paper, we reported a straightforward approach to the synthesis of interpolyelectrolytes by co-assembling of the thiacalix[4]arene with four negatively charged functional groups on the one side of macrocycle, and pillar[5]arene with 10 ammonium groups located on both sides. Nanostructured polyelectrolyte complexes show effective packaging of high-molecular DNA from calf thymus. The interaction of co-interpolyelectrolytes with the DNA is completely different from the interaction of the pillar[5]arene with the DNA. Two different complexes with DNA, i.e., micelleplex- and polyplex-type, were formed. The DNA in both cases preserved its secondary structure in native B form without distorting helicity. The presented approach provides important advantage for the design of effective biomolecular gene delivery systems.
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16
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Jiang J, Li J, Liu C, Liu R, Liang X, Zhou Y, Pan L, Chen H, Ma Z. Study on the substitution effects of zinc benzoate terpyridine complexes on photoluminescence, antiproliferative potential and DNA binding properties. J Biol Inorg Chem 2020; 25:311-324. [PMID: 32112291 DOI: 10.1007/s00775-020-01763-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 02/08/2020] [Indexed: 01/26/2023]
Abstract
Six zinc(II) complexes, [Zn(OCOPh)2LR] (R = 1, 2, 3, 4, 5, 6) were synthesized by the reaction of zinc benzoate and six para-substituted 4-phenyl-terpyridine complexes and their structures were confirmed by elemental analysis, FT-IR, 1H NMR and X-ray single crystal diffraction analysis. Their photoluminescent properties in solid and in solutions of DMSO were studied. Three human cancer cell lines were used for antiproliferative potential: human lung cancer cell line (A549), human esophageal cancer cell line (Eca-109) and human breast cancer cell line (MCF-7). The results have shown that these zinc complexes have good inhibitory effects on cancer cells, which are better than that of the commonly used clinical drug cisplatin. The ability of the complexes to binding to CT-DNA was studied by UV spectroscopy and fluorescence titration, while the interaction between the complexes and CT-DNA, AT6, GC6 short-chain DNA sequences and G-quadruplex were analyzed by circular dichroism (CD). It is found that these complexes can bind to DNA, and the binding mode is mainly intercalator. The docking of the complexes with the DNA fragment was simulated using molecular docking software. All the results clearly display that the substituents at these ligands of the complexes have the substitution effects on the properties of photoluminescence, antiproliferative potential and DNA binding study.
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Affiliation(s)
- Jinzhang Jiang
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China
| | - Jiahe Li
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China
| | - Chengzhang Liu
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China
| | - Rongping Liu
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China
| | - Xing Liang
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China
| | - Yanling Zhou
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China.
| | - Lixia Pan
- National Engineering Research Center for Non-Food Biorefinery, State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, 530004, PR China.
| | - Hailan Chen
- School of Animal Science and Technology, Guangxi University, Nanning, 530004, PR China.
| | - Zhen Ma
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, PR China.
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17
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Das M, Mukherjee S, Koley B, Choudhuri I, Bhattacharyya N, Roy P, Samanta BC, Barai M, Maity T. Developing novel zinc(ii) and copper(ii) Schiff base complexes: combined experimental and theoretical investigation on their DNA/protein binding efficacy and anticancer activity. NEW J CHEM 2020. [DOI: 10.1039/d0nj03844j] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Zn(ii) and Cu(ii) Schiff base complexes having DNA and HSA binding efficacy have been exploited as cancer therapeutic agents.
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Affiliation(s)
- Manik Das
- Department of Chemistry
- P. K. College
- Contai
- Purba Medinipur
- India
| | - Somali Mukherjee
- Department of Chemistry
- University of Calcutta
- Kolkata 700009
- India
| | - Biplab Koley
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur
- India
| | - Indranil Choudhuri
- Department of Biotechnology
- Panskura Banamali College
- Purba Medinipur
- India
| | | | - Pritam Roy
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur
- India
| | | | - Manas Barai
- Department of Chemistry
- Vidyasagar University
- West Bengal
- India
| | - Tithi Maity
- Department of Chemistry
- P. K. College
- Contai
- Purba Medinipur
- India
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18
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Hassan AA, Aly AA, Mohamed NK, El Shaieb KM, Makhlouf MM, Abdelhafez ESMN, Bräse S, Nieger M, Dalby KN, Kaoud TS. Design, synthesis, and DNA interaction studies of furo-imidazo[3.3.3]propellane derivatives: Potential anticancer agents. Bioorg Chem 2019; 85:585-599. [PMID: 30878891 PMCID: PMC6543821 DOI: 10.1016/j.bioorg.2019.02.027] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2019] [Revised: 02/10/2019] [Accepted: 02/11/2019] [Indexed: 11/26/2022]
Abstract
A large number of natural products containing the propellane scaffold have been reported to exhibit cytotoxicity against several cancers; however, their mechanism of action is still unknown. Anticancer drugs targeting DNA are mainly composed of small planar molecule/s that can interact with the DNA helix, causing DNA malfunction and cell death. The aim of this study was to design and synthesize propellane derivatives that can act as DNA intercalators and/or groove binders. The unique structure of the propellane derivatives and their ability to display planar ligands with numerous possible geometries, renders them potential starting points to design new drugs targeting DNA in cancer cells. New substituted furo-imidazo[3.3.3]propellanes were synthesized via the reaction of substituted alkenylidene-hydrazinecarbothioamides with 2-(1,3-dioxo-2,3-dihydro-1H-2-ylidene)propanedinitrile in tetrahydrofuran at room temperature. The structures of the products were confirmed by a combination of elemental analysis, NMR, ESI-MS, IR and single crystal X-ray analysis. Interestingly, 5c, 5d and 5f showed an ability to interact with Calf Thymus DNA (CT-DNA). Their DNA-binding mode was investigated using a combination of absorption spectroscopy, DNA melting, viscosity, CD spectroscopy measurements, as well as competitive binding studies with several dyes. Their cytotoxicity was evaluated against the NCI-60 panel of cancer cell lines. 5c, 5d and 5f exhibited similar anti-proliferative activity against the A549 non-small cell lung cancer (NSCLC) cell line. Further mechanistic studies revealed their ability to induce DNA damage in the A549 cell line, as well as apoptosis, evidenced by elevated Annexin V expression, enhanced caspase 3/7 activation and PARP cleavage. In this study, we present the potential for designing novel propellanes to provoke cytotoxic activity, likely through DNA binding-induced DNA damage and apoptosis.
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Affiliation(s)
- Alaa A Hassan
- Chemistry Department, Faculty of Science, Minia University, El-Minia 61519, Egypt.
| | - Ashraf A Aly
- Chemistry Department, Faculty of Science, Minia University, El-Minia 61519, Egypt
| | - Nasr K Mohamed
- Chemistry Department, Faculty of Science, Minia University, El-Minia 61519, Egypt
| | - Kamal M El Shaieb
- Chemistry Department, Faculty of Science, Minia University, El-Minia 61519, Egypt
| | - Maysa M Makhlouf
- Chemistry Department, Faculty of Science, Minia University, El-Minia 61519, Egypt
| | | | - Stefan Bräse
- Institute of Organic Chemistry, Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, Karlsruhe 76131, Germany; Institute of Toxicology and Genetics, Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany
| | - Martin Nieger
- Department of Chemistry, University of Helsinki, P.O. Box 55, A.I. Virtasen aukio I, Helsinki 00014, Finland
| | - Kevin N Dalby
- Division of Chemical Biology and Medicinal Chemistry, The University of Texas at Austin, Austin, TX 78712, USA
| | - Tamer S Kaoud
- Department of Medicinal Chemistry, Faculty of Pharmacy, Minia University, El-Minia 61519, Egypt; Division of Chemical Biology and Medicinal Chemistry, The University of Texas at Austin, Austin, TX 78712, USA.
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19
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Temboot P, Usman F, Ul-Haq Z, Khalil R, Srichana T. Biomolecular interactions of amphotericin B nanomicelles with serum albumins: A combined biophysical and molecular docking approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 205:442-456. [PMID: 30055454 DOI: 10.1016/j.saa.2018.07.057] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 07/17/2018] [Accepted: 07/19/2018] [Indexed: 06/08/2023]
Abstract
In this work, we investigated the interaction of amphotericin B (AmB) nanomicelles on the binding affinity and conformational change of human serum albumin (HSA) in comparison with bovine serum albumin (BSA) under physiological conditions by conducting several spectroscopic techniques further confirmed through molecular docking approaches. The experimental results showed that AmB nanomicelles could bind to both HSA and BSA to form protein/drug complexes with one binding site, and the binding process was spontaneous under physiological conditions. Fluorescence studies revealed that the quenching mechanism of these complexes was static quenching rather than dynamic quenching and exhibited strong binding between serum albumin and AmB nanomicelles. The results from UV-Visible spectra, FT-IR spectra, and CD spectra revealed that the AmB formulations affected the structure of both HSA and BSA proteins by changing the microenvironment around the tryptophan residues of protein and caused a secondary structure change of the protein with the loss of helical stability. The molecular docking experiments also supported the above results and effectively proved the binding and changes in the conformation of serum albumins by AmB micelles. This finding provides information of in vitro drug-plasma protein interactions for further study on the AmB binding mechanism and the pharmacodynamics and pharmacokinetics.
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Affiliation(s)
- Pornvichai Temboot
- Drug Delivery System Excellence Center, Faculty of Pharmaceutical Sciences, Prince of Songkla Univesity, Songkhla 90112, Thailand
| | - Faisal Usman
- Drug Delivery System Excellence Center, Faculty of Pharmaceutical Sciences, Prince of Songkla Univesity, Songkhla 90112, Thailand
| | - Zaheer Ul-Haq
- Computational Chemistry Unit, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
| | - Ruqaiya Khalil
- Computational Chemistry Unit, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
| | - Teerapol Srichana
- Drug Delivery System Excellence Center, Faculty of Pharmaceutical Sciences, Prince of Songkla Univesity, Songkhla 90112, Thailand.
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20
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Mansouri-Torshizi H, Zareian-Jahromi S, Abdi K, Saeidifar M. Nonionic but water soluble, [Glycine-Pd-Alanine] and [Glycine-Pd-Valine] complexes. Their synthesis, characterization, antitumor activities and rich DNA/HSA interaction studies. J Biomol Struct Dyn 2018; 37:3566-3582. [PMID: 30284510 DOI: 10.1080/07391102.2018.1520647] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
Two novel, neutral and water soluble Pd(II) complexes of formula [Pd(Gly)(Ala)] (1) and [Pd(Gly)(Val)] (2) (Gly, Ala, and Val are anionic forms of glycine, alanine, and valine amino acids, respectively) have been synthesized and characterized by FT-IR, UV-Vis, 1H-NMR, elemental analysis, and molar conductivity measurement. The data revealed that each amino acid binds to Pd(II) through the nitrogen of -NH2 and the oxygen of -COO- groups and acts as a bidentate chelate. These complexes have been assayed against leukemia cells (K562) using MTT method. The results indicated that both of the complexes display more cytotoxicity than the well-known anticancer drug, cisplatin. The interaction of the compounds with calf thymus DNA (CT-DNA) and human serum albumin (HSA) were assayed by a series of experimental techniques including electronic absorption, fluorescence, viscometry, gel electrophoresis, and FT-IR. The results indicated that the two complexes have interesting binding propensities toward CT-DNA as well as HSA and the binding affinity of (1) is more than (2). The fluorescence data indicated that both complexes strongly quench the fluorescence of ethidium bromide-DNA system as well as the intrinsic fluorescence of HSA via static quenching procedures. The thermodynamic parameters (ΔH°, ΔS°, and ΔG°) calculated from the fluorescence studies showed that hydrogen bonds and van der Waals interactions play a major role in the binding of the complexes to DNA and HSA. We suggest that both of the Pd(II) complexes exhibit the groove binding mode with CT-DNA and interact with the main binding pocket of HSA. Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Hassan Mansouri-Torshizi
- a Department of Chemistry, Faculty of Science , University of Sistan and Baluchestan , Zahedan , Iran
| | - Sareh Zareian-Jahromi
- a Department of Chemistry, Faculty of Science , University of Sistan and Baluchestan , Zahedan , Iran
| | - Khatereh Abdi
- a Department of Chemistry, Faculty of Science , University of Sistan and Baluchestan , Zahedan , Iran
| | - Maryam Saeidifar
- b Department of Nanotechnology and Advanced Materials , Materials and Energy Research Center , Karaj , Iran
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21
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Alam MF, Varshney S, Khan MA, Laskar AA, Younus H. In vitro DNA binding studies of therapeutic and prophylactic drug citral. Int J Biol Macromol 2018; 113:300-308. [DOI: 10.1016/j.ijbiomac.2018.02.098] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 02/10/2018] [Accepted: 02/14/2018] [Indexed: 01/09/2023]
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22
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Han Y, Shen H, Zhao M, Sun W. Flavour binding mechanism between a typical meat flavour compound (nonanal) and porcine myofibrillar proteins with consideration of conformational changes. Int J Food Sci Technol 2018. [DOI: 10.1111/ijfs.13784] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yurui Han
- School of Food Sciences and Engineering; South China University of Technology; Guangzhou 510640 China
| | - Hui Shen
- School of Food Sciences and Engineering; South China University of Technology; Guangzhou 510640 China
| | - Mouming Zhao
- School of Food Sciences and Engineering; South China University of Technology; Guangzhou 510640 China
| | - Weizheng Sun
- School of Food Sciences and Engineering; South China University of Technology; Guangzhou 510640 China
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23
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Tetracoordinate cobalt(II) complexes with neocuproine: single-molecule magnets with potential biological activity. CHEMICAL PAPERS 2017. [DOI: 10.1007/s11696-017-0322-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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24
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Mansouri-Torshizi H, Khosravi F, Ghahghaei A, Shahraki S, Zareian-Jahromi S. Investigation on the interaction of newly designed potential antibacterial Zn(II) complexes with CT-DNA and HSA. J Biomol Struct Dyn 2017; 36:2713-2737. [DOI: 10.1080/07391102.2017.1363086] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
| | - Fatemeh Khosravi
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Arezou Ghahghaei
- Department of Biology, University of Sistan and Baluchestan, Zahedan, Iran
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25
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Gupta G, Das A, Park KC, Tron A, Kim H, Mun J, Mandal N, Chi KW, Lee CY. Self-Assembled Novel BODIPY-Based Palladium Supramolecules and Their Cellular Localization. Inorg Chem 2017; 56:4616-4622. [PMID: 28383898 DOI: 10.1021/acs.inorgchem.7b00260] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Four new palladium metal supramolecules with triangular/square architectures derived from boron dipyrromethane (BODIPY) ligands were synthesized by self-assembly and fully characterized by 1H and 31P NMR, electrospray ionization mass spectrometry, and single-crystal X-ray diffraction. These supramolecules were more cytotoxic to brain cancer (glioblastoma) cells than to normal lung fibroblasts. Their cytotoxicity to the glioblastoma cells was higher than that of a benchmark metal-based chemotherapy drug, cisplatin. The characteristic green fluorescence of the BODIPY ligands in these supramolecules permitted their intracellular visualization using confocal microscopy, and the compounds were localized in the cytoplasm and on the plasma membrane.
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Affiliation(s)
| | - Abhishek Das
- Division of Molecular Medicine, Bose Institute , P-1/12, CIT Scheme-VII M, Kolkata 700054, India
| | | | | | - Hyunuk Kim
- Convergence Materials Laboratory, Korea Institute of Energy Research , Daejeon 305-343, Republic of Korea
| | | | - Nripendranath Mandal
- Division of Molecular Medicine, Bose Institute , P-1/12, CIT Scheme-VII M, Kolkata 700054, India
| | - Ki-Whan Chi
- Department of Chemistry, University of Ulsan , Ulsan 680-749, Republic of Korea
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26
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Inci D, Aydin R, Zorlu Y. Affinity of a new copper(II) complex to DNA/BSA and antioxidant/radical scavenging activities: crystal structure of [Cu(4,7-diphenyl-1,10-phenanthroline)(leucine)(NO3)(H2O)]. J COORD CHEM 2016. [DOI: 10.1080/00958972.2016.1213390] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Duygu Inci
- Faculty of Arts and Sciences, Department of Chemistry, Uludag University, Bursa, Turkey
| | - Rahmiye Aydin
- Faculty of Arts and Sciences, Department of Chemistry, Uludag University, Bursa, Turkey
| | - Yunus Zorlu
- Department of Chemistry, Gebze Technical University, Gebze, Turkey
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27
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Esmailzadeh K, Housaindokht MR, Moradi A, Esmaeili AA, Sharifi Z. Synthesis, characterization and biological evaluation of novel α, β unsaturated amides. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 161:170-177. [PMID: 26971027 DOI: 10.1016/j.saa.2016.03.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2015] [Revised: 02/28/2016] [Accepted: 03/01/2016] [Indexed: 06/05/2023]
Abstract
Three derivatives of α,β unsaturated amides have been successfully synthesized via Ugi-four component (U-4CR) reaction. The interactions of the amides with calf thymus deoxyribonucleic acid (ct-DNA) have been investigated in the Tris-HCl buffer (pH=7.4) using viscometric, spectroscopic, thermal denaturation studies, and also molecular docking. By UV-Vis absorption spectroscopy studies, adding CT-DNA to the compound solution caused the hypochromism indicates that there are interactions between the compounds and DNA base pairs. In competitive fluorescence with methylene blue as an intercalator probe, adding compounds to DNA-MB solution caused an increase in emission spectra of the complex. This could be because of compound replacing, with similar binding mode of MB, between the DNA base pairs due to release of bonded MB molecules from DNA-MB complex. Thermal denaturation studies and viscometric experiments also indicated that all three investigated compounds bind to CT-DNA by non-classical intercalation mode. Additionally, molecular docking technique predicted partial intercalation binding mode for the compounds. Also, the highest binding energy was obtained for compound 5a. These results are in agreement with results obtained by empirical methods.
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Affiliation(s)
- K Esmailzadeh
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - M R Housaindokht
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran; Research and Technology Center of Biomolecules, Ferdowsi University of Mashhad, Mashhad, Iran.
| | - A Moradi
- Department of Chemistry, Faculty of Science, University of Birjand, Birjand, Iran
| | - A A Esmaeili
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran; Research and Technology Center of Biomolecules, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Z Sharifi
- Research and Technology Center of Biomolecules, Ferdowsi University of Mashhad, Mashhad, Iran
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28
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Unexpected regiospecific formation and DNA binding of new 3-(acridin-9-yl)methyl-2-iminothiazolidin-4-ones. J CHEM SCI 2016. [DOI: 10.1007/s12039-015-1023-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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29
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Gupta G, Das A, Ghate NB, Kim T, Ryu JY, Lee J, Mandal N, Lee CY. Novel BODIPY-based Ru(ii) and Ir(iii) metalla-rectangles: cellular localization of compounds and their antiproliferative activities. Chem Commun (Camb) 2016; 52:4274-7. [DOI: 10.1039/c6cc00046k] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The synthesis and antiproliferative activities of novel BODIPY-based Ru and Ir rectangles are presented.
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Affiliation(s)
- Gajendra Gupta
- Department of Energy and Chemical Engineering
- Incheon National University
- Incheon 406-772
- Republic of Korea
| | - Abhishek Das
- Division of Molecular Medicine
- Bose Institute
- Kolkata-700054
- India
| | | | - Takhyeon Kim
- Department of Energy and Chemical Engineering
- Incheon National University
- Incheon 406-772
- Republic of Korea
| | - Ji Yeon Ryu
- Department of Chemistry
- Chonnam National University
- Gwangju 500-757
- Republic of Korea
| | - Junseong Lee
- Department of Chemistry
- Chonnam National University
- Gwangju 500-757
- Republic of Korea
| | | | - Chang Yeon Lee
- Department of Energy and Chemical Engineering
- Incheon National University
- Incheon 406-772
- Republic of Korea
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30
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Arun T, Subramanian R, Raman N. Novel bio-essential metal based complexes linked by heterocyclic ligand: Synthesis, structural elucidation, biological investigation and docking analysis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2015; 154:67-76. [PMID: 26690017 DOI: 10.1016/j.jphotobiol.2015.11.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Revised: 11/06/2015] [Accepted: 11/10/2015] [Indexed: 11/30/2022]
Abstract
New series of bio-essential metal based complexes linked by Schiff base ligand (L) and 2,2'-bipyridine (bpy) have been synthesized and characterized by diverse spectral techniques such as elemental analysis, magnetic susceptibility, molar conductivity measurements, FT-IR, UV-Vis., (1)H NMR, (13)C NMR, EPR and Mass. The spectral data suggest that the metal complexes espouse octahedral geometry around the metal ions. Interactions of the complexes with CT DNA have been explored by electronic absorption, ethidium bromide displacement assay, viscosity measurements, cyclic voltammetry and differential pulse voltammetry in order to evaluate the possible DNA-binding mode and to calculate the corresponding DNA-binding constants. The DNA interaction studies propose that the intercalative mode of interaction and the complexes exhibit oxidative cleavage of pUC19 DNA in the presence of hydrogen peroxide as activator. The synthesized Schiff base ligand and its metal complexes have been screened for anti-microbial activity by micro dilution method against two Gram-positive bacteria (Staphylococcus aureus and Bacillus subtilis), two Gram-negative bacteria (Escherichia coli and Salmonella typhi) and three fungi strains (Fusarium solani, Aspergillus niger and Candida albicans) revealing that the complexes are good anti-pathogenic agents than the ligand. Moreover, molecular docking analysis has been performed to confirm the nature of binding of the complexes with DNA.
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Affiliation(s)
- T Arun
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamilnadu, India
| | - R Subramanian
- Centre for Scientific and Applied Research, PSN College of Engineering and Technology, Tirunelveli 627152, Tamilnadu, India
| | - N Raman
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamilnadu, India.
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31
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Synthesis, biological and electrochemical evaluation of novel nitroaromatics as potential anticancerous drugs. Bioelectrochemistry 2015; 104:85-92. [DOI: 10.1016/j.bioelechem.2015.03.007] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2014] [Revised: 03/27/2015] [Accepted: 03/27/2015] [Indexed: 11/22/2022]
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