Neobenedenia melleni Parasite of Red Snapper, Lutjanus erythropterus, with Regression Statistical Analysis between Fish Length, Temperature, and Parasitic Intensity in Infected Fish, Cultured at Jerejak Island, Penang, Malaysia

The First High-Quality Chromosome-Level Genome of the Lutjanus erythropterus (Bloch, 1790) Using Single-Tube Long Fragment Reads and Hi-C Technologies

Lutjanus erythropterus (Bloch, 1790), a Perciformes from the Lutjanidae family, is a commercially important species because of its taste and abundance. Despite the increase in genome resources in recent years, few genome assemblies are available within this fish family for comparative and functional studies. In this study, we determined the chromosomal genome of Crimson snapper using high-throughput Single-Tube Long Fragment Reads sequencing technology and Hi-C data. The final assembly size was 973.04 Mb with contig and scaffold N50 values of 1.51 and 40.65 Mb, respectively. We successfully scaffolded 95.84% of the genome sequence onto 24 chromosomes ranging in length from 19.37 to 49.48 Mb. A total of 22,663 genes and 13,877 gene families were identified in the genome, with 29 gene families being L. erythropterus-specific. A phylogenetic analysis using single-copy gene families showed that L. erythropterus and Larimichthys crocea had the closest genetic relationship with a divergence time of ∼47.7 Ma. This new genomic resource will facilitate comparative genomic studies as well as genetic breeding programs for L. erythropterus.

First Molecular Identification of Caligus clemensi on Cultured Crimson Snapper Lutjanus erythropterus on Jerejak Island, Penang, Peninsular Malaysia

Fish parasites such as Caligus clemensi are a serious concern for cultured fish in many regions of the world, including Malaysia. This study was designed to elucidate the parasites’ prevalence and intensity coupled with the morphology and molecular identification of C. clemensi on cultured Lutjanus erythropterus in Jerejak Island, Penang, Peninsular Malaysia. The study was carried out on 200 fish specimens of cultured L. erythropterus obtained from the GST group aquaculture farm. Parasites were collected from the infested part of L. erythropterus fish, and their prevalence and intensity were determined. The parasites were identified morphologically using a field emission scanning electron microscope. Molecular studies were performed through PCR amplification and sequencing. MEGA 5 was used to construct a phylogenetic tree using the pairwise distance method. The results showed that only the C. clemensi parasite was found prevalent on L. erythropterus fish with a prevalence and mean intensity (S.D) of 198 (99%) and 36.4 ± 12.2, respectively. The prevalence varied significantly with respect to fish length (p < 0.05). The nucleotide BLAST sequence for 18S ribosomal RNA partial sequences showed 97% with 100% query similarity, E-value 0 with C. clemensi with the accession number DQ123833.1. Conclusively, C. clemensi remains a major parasite of L. erythropterus in the study area.

Seasonal population dynamics of Lepeophtheirus spinifer and Neobenedenia sp. coinfecting snubnose pompano (Trachinotus blochii) breeders in marine cages in the Philippines

Studies on the biology and ecology of sea lice are lacking in tropical regions such as in Southeast Asia where finfish cage farming has grown dramatically in the past decades. This study investigated the seasonal population dynamics of ectoparasites infecting captive snubnose pompano (Trachinotus blochii) breeders in marine cages in the Philippines. The pompano breeders were found to be naturally coinfected with caligid copepod Lepeophtheirus spinifer and capsalid monogenean Neobenedenia sp. These breeders were monitored and examined bimonthly (n = 10 per sampling) from September 2017 to May 2018, covering the warm season and cold season in the Philippines. Our results clearly show that L. spinifer population maintain a 100 % prevalence throughout warm and cold seasons however, mean abundance and intensity increased only during the cold months (early November to early March) and displayed an oscillating trend during this period. Highest mean intensity was recorded in early January (221.4 ± 24.6; temperature = 27.5 ± 0.3 °C; salinity = 34.8 ± 0.3 ppt) while the lowest mean intensity was recorded during the warm months dipping to 12.5 ± 1.9 in early May (temperature = 30.5 ± 0.3 °C; salinity = 30.3 ± 0.3 ppt). The prevalence of adult and pre-adult was high throughout the monitoring period at 70-100 % except at the start of summer (late March to early May) for pre-adult (30-90 %). In comparison, the chalimus stages were only observed during the cold months specifically from early November to late January with prevalence of 40-80 %. The highest mean abundance (3.4 ± 0.7) and mean intensity (4.3 ± 0.6) was in early November which coincided with the first peak of the total L. spinifer population. Neobenedenia sp. occurred year-round with no significant changes in the population mean abundance and mean intensity between warm and cold seasons. This study presents comprehensive information on the seasonal population dynamics of L. spinifer and Neobenedenia sp. in the Philippines, providing valuable insights on the ecology of caligid sea louse which is fundamental in the formulation of control and management strategies of these economically significant ectoparasites.