1
|
Prabmark K, Boonyapakron K, Bunterngsook B, Arunrattanamook N, Uengwetwanit T, Chitnumsub P, Champreda V. Enhancement of catalytic activity and alkaline stability of cellobiohydrolase by structure-based protein engineering. 3 Biotech 2022; 12:269. [PMID: 36097631 PMCID: PMC9463429 DOI: 10.1007/s13205-022-03339-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 08/16/2022] [Indexed: 11/30/2022] Open
Abstract
Alkaline cellobiohydrolases have the potential for application in various industries, including pulp processing and laundry where operation under high pH conditions is preferred. In this study, variants of CtCel6A cellobiohydrolase from Chaetomium thermophilum were generated by structural-based protein engineering with the rationale of increasing catalytic activity and alkaline stability. The variants included removal of the carbohydrate-binding module (CBM) and substitution of residues 173 and 200. The CBM-deleted enzyme with Y200F mutation predicted to mediate conformational change at the N-terminal loop demonstrated increased alkaline stability at 60 °C, pH 8.0 for 24 h up to 2.25-fold compared with the wild-type enzyme. Another CBM-deleted enzyme with L173E mutation predicted to induce a new hydrogen bond in the substrate-binding cleft showed enhanced hydrolysis yield of pretreated sugarcane trash up to 4.65-fold greater than that of the wild-type enzyme at the pH 8.0. The variant enzymes could thus be developed for applications on cellulose hydrolysis and plant fiber modification operated under alkaline conditions. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-022-03339-4.
Collapse
Affiliation(s)
- Kanoknart Prabmark
- Enzyme Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| | - Katewadee Boonyapakron
- Enzyme Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| | - Benjarat Bunterngsook
- Enzyme Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| | - Nattapol Arunrattanamook
- Enzyme Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| | - Tanaporn Uengwetwanit
- Microarray Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| | - Penchit Chitnumsub
- Biomolecular Analysis and Application Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| | - Verawat Champreda
- Enzyme Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120 Thailand
| |
Collapse
|
2
|
Cunha AC, Santos RACD, Riaño-Pachon DM, Squina FM, Oliveira JVC, Goldman GH, Souza AT, Gomes LS, Godoy-Santos F, Teixeira JA, Faria-Oliveira F, Rosse IC, Castro IM, Lucas C, Brandão RL. Draft genome sequence of Wickerhamomyces anomalus LBCM1105, isolated from cachaça fermentation. Genet Mol Biol 2020; 43:e20190122. [PMID: 32511662 PMCID: PMC7278976 DOI: 10.1590/1678-4685-gmb-2019-0122] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Accepted: 04/06/2020] [Indexed: 12/02/2022] Open
Abstract
Wickerhamomyces anomalus LBCM1105 is a yeast isolated from cachaça distillery fermentation vats, notable for exceptional glycerol consumption ability. We report its draft genome with 20.5x in-depth coverage and around 90% extension and completeness. It harbors the sequences of proteins involved in glycerol transport and metabolism.
Collapse
Affiliation(s)
- Aureliano C Cunha
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Renato A Corrêa Dos Santos
- Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, SP, Brazil
| | - Diego M Riaño-Pachon
- Universidade de São Paulo, Centro de Energia Nuclear na Agricultura, Laboratório de Biologia Computacional, Evolutiva e de Sistemas, Piracicaba, SP, Brazil
| | - Fábio M Squina
- Universidade de Sorocaba, Programa de Pós-Graduação em Processos Tecnológicos e Ambientais, Sorocaba, SP, Brazil
| | - Juliana V C Oliveira
- Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, SP, Brazil
| | - Gustavo H Goldman
- Universidade de São Paulo, Faculdade de Ciências Farmacêuticas, Ribeirão Preto, SP, Brazil
| | - Aline T Souza
- Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, SP, Brazil
| | - Lorena S Gomes
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Fernanda Godoy-Santos
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Janaina A Teixeira
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Fábio Faria-Oliveira
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Izinara C Rosse
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Ieso M Castro
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| | - Cândida Lucas
- Universidade do Minho, Centro de Pesquisa Molecular e Ambiental (CBMA), Instituto de Ciência e Inovação para a Bio-Sustentabilidade (IB - S), Braga, Portugal
| | - Rogelio L Brandão
- Universidade Federal de Ouro Preto, Laboratório de Biologia Molecular e Celular, MG, Brazil
| |
Collapse
|
3
|
High-affinity transport, cyanide-resistant respiration, and ethanol production under aerobiosis underlying efficient high glycerol consumption by Wickerhamomyces anomalus. J Ind Microbiol Biotechnol 2019; 46:709-723. [PMID: 30680472 DOI: 10.1007/s10295-018-02119-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 12/19/2018] [Indexed: 01/11/2023]
Abstract
Wickerhamomyces anomalus strain LBCM1105 was originally isolated from the wort of cachaça (the Brazilian fermented sugarcane juice-derived Brazilian spirit) and has been shown to grow exceptionally well at high amounts of glycerol. This paramount residue from the biodiesel industry is a promising cheap carbon source for yeast biotechnology. The assessment of the physiological traits underlying the W. anomalus glycerol consumption ability in opposition to Saccharomyces cerevisiae is presented. A new WaStl1 concentrative glycerol-H+ symporter with twice the affinity of S. cerevisiae was identified. As in this yeast, WaSTL1 is repressed by glucose and derepressed/induced by glycerol but much more highly expressed. Moreover, LBCM1105 aerobically growing on glycerol was found to produce ethanol, providing a redox escape to compensate the redox imbalance at the level of cyanide-resistant respiration (CRR) and glycerol 3P shuttle. This work is critical for understanding the utilization of glycerol by non-Saccharomyces yeasts being indispensable to consider their industrial application feeding on biodiesel residue.
Collapse
|