1
|
Gajera G, Thakkar N, Godse C, DeSouza A, Mehta D, Kothari V. Sub-lethal concentration of a colloidal nanosilver formulation (Silversol®) triggers dysregulation of iron homeostasis and nitrogen metabolism in multidrug resistant Pseudomonas aeruginosa. BMC Microbiol 2023; 23:303. [PMID: 37872532 PMCID: PMC10591374 DOI: 10.1186/s12866-023-03062-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 10/12/2023] [Indexed: 10/25/2023] Open
Abstract
BACKGROUND Pseudomonas aeruginosa is a notorious pathogen. Its multidrug resistant strains are listed among priority pathogens against whom discovery of novel antibacterial agents and, elucidation of new anti-pathogenicity mechanisms are urgently warranted. This study describes multiple antibacterial effects of a colloidal nano-silver formulation- Silversol® against a multi-drug resistant strain of P. aeruginosa. RESULTS Minimum inhibitory concentration (MIC) of Silversol® against P. aeruginosa was found to be 1.5 ppm; and at sub-MIC of 1 ppm, it was able to alter quorum-sensing regulated pigmentation (pyocanin 82%↓; pyoverdine 48%↑), exopolysaccharide synthesis (76%↑) and biofilm formation, susceptibility to antibiotics (streptomycin and augmentin), protein synthesis and export (65%↑), nitrogen metabolism (37%↑ nitrite accumulation), and siderophore production in this pathogen. Network analysis of the differentially expressed genes in the transcriptome of the silversol-treated bacterium identified ten genes as the potential molecular targets: norB, norD, nirS, nirF, nirM, nirQ, nosZ, nosY, narK1, and norE (all associated with nitrogen metabolism or denitrification). Three of them (norB, narK1, and norE) were also validated through RT-PCR. CONCLUSIONS Generation of nitrosative stress and disturbance of iron homeostasis were found to be the major mechanisms associated with anti-Pseudomonas activity of Silversol®.
Collapse
Affiliation(s)
- Gemini Gajera
- Institute of Science, Nirma University, Ahmedabad, 382481, India
| | - Nidhi Thakkar
- Institute of Science, Nirma University, Ahmedabad, 382481, India
| | | | | | | | - Vijay Kothari
- Institute of Science, Nirma University, Ahmedabad, 382481, India.
| |
Collapse
|
2
|
Gajera G, Henriksen N, Cox B, Kothari V. Identification of anti-pathogenic activity among in silico predicted small-molecule inhibitors of Pseudomonas aeruginosa LasR or nitric oxide reductase (NOR). Drug Target Insights 2023; 17:101-109. [PMID: 37811195 PMCID: PMC10551673 DOI: 10.33393/dti.2023.2638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 09/04/2023] [Indexed: 10/10/2023] Open
Abstract
Introduction Antibiotic-resistant Pseudomonas aeruginosa strains cause considerable morbidity and mortality globally. Identification of novel targets in this notorious pathogen is urgently warranted to facilitate discovery of new anti-pathogenic agents against it. This study attempted to identify small-molecule inhibitors of two important proteins LasR and nitric oxide reductase (NOR) in P. aeruginosa. 'Las' system can be said to be the 'master' regulator of quorum sensing in P. aeruginosa, whose receptor protein is LasR. Similarly, NOR is crucial to detoxification of reactive nitrogen species. Methods In silico identification of potential LasR or NOR inhibitors was attempted through a virtual screening platform AtomNet® to obtain a final subset of <100 top scoring compounds. These compounds were evaluated for their in vivo anti-pathogenic activity by challenging the model host Caenorhabditis elegans with P. aeruginosa in the presence or absence of test compounds. Survival of the worm population in 24-well assay plates was monitored over a period of 5 days microscopically. Results Of the 96 predicted LasR inhibitors, 11 exhibited anti-Pseudomonas activity (23%-96% inhibition of bacterial virulence as per third-day end-point) at 25-50 µg/mL. Of the 85 predicted NOR inhibitors, 8 exhibited anti-Pseudomonas activity (40%-85% inhibition of bacterial virulence as per second-day end-point) at 25-50 µg/mL. Conclusion Further investigation on molecular mode of action of compounds found active in this study is warranted. Virtual screening can be said to be a useful tool in narrowing down the list of compounds requiring actual wet-lab screening, saving considerable time and efforts for drug discovery.
Collapse
Affiliation(s)
- Gemini Gajera
- Institute of Science, Nirma University, Ahmedabad - India
| | | | - Bryan Cox
- Atomwise Inc, San Francisco, CA - USA
| | - Vijay Kothari
- Institute of Science, Nirma University, Ahmedabad - India
| |
Collapse
|
3
|
Baloyi IT, Adeosun IJ, Yusuf AA, Cosa S. In Silico and In Vitro Screening of Antipathogenic Properties of Melianthus comosus (Vahl) against Pseudomonas aeruginosa. Antibiotics (Basel) 2021; 10:antibiotics10060679. [PMID: 34198845 PMCID: PMC8230066 DOI: 10.3390/antibiotics10060679] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 06/02/2021] [Accepted: 06/03/2021] [Indexed: 11/30/2022] Open
Abstract
Bacterial quorum sensing (QS) system regulates pathogenesis, virulence, and biofilm formation, and together they contribute to nosocomial infections. Opportunistic pathogens, such as Pseudomonas aeruginosa, rely on QS for regulating virulence factors. Therefore, blocking the QS system may aid management of various infectious diseases caused by human pathogens. Plant secondary metabolites can thwart bacterial colonization and virulence. As such, this study was undertaken to evaluate three extracts from the medicinal plant, Melianthus comosus, from which phytochemical compounds were identified with potential to inhibit QS-dependent virulence factors in P. aeruginosa. Chemical profiling of the three extracts identified 1,2-benzene dicarboxylic acid, diethyl ester, neophytadiene and hexadecanoic acid as the common compounds. Validation of antibacterial activity confirmed the same MIC values of 0.78 mg/mL for aqueous, methanol and dichloromethane extracts while selected guanosine showed MIC 0.031 mg/mL. Molecular docking analysis showed anti-quorum sensing (AQS) potential of guanosine binding to CviR’ and 2UV0 proteins with varying docking scores of −5.969 and −8.376 kcal/mol, respectively. Guanosine inhibited biofilm cell attachment and biofilm development at 78.88% and 34.85%, respectively. Significant swimming and swarming motility restriction of P. aeruginosa were observed at the highest concentration of plant extracts and guanosine. Overall, guanosine revealed the best swarming motility restrictions. M. comosus extracts and guanosine have shown clear antibacterial effects and subsequent reduction of QS-dependent virulence activities against P.aeruginosa. Therefore, they could be ideal candidates in the search for antipathogenic drugs to combat P.aeruginosa infections.
Collapse
Affiliation(s)
- Itumeleng T. Baloyi
- Division of Microbiology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Private Bag X20, Hatfield Pretoria 0028, South Africa; (I.T.B.); (I.J.A.)
| | - Idowu J. Adeosun
- Division of Microbiology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Private Bag X20, Hatfield Pretoria 0028, South Africa; (I.T.B.); (I.J.A.)
| | - Abdullahi A. Yusuf
- Department of Zoology and Entomology, University of Pretoria, Hatfield Pretoria 0028, South Africa;
| | - Sekelwa Cosa
- Division of Microbiology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Private Bag X20, Hatfield Pretoria 0028, South Africa; (I.T.B.); (I.J.A.)
- Correspondence:
| |
Collapse
|
4
|
Joshi C, Patel P, Godatwar P, Sharma S, Kothari V. Identifying the Molecular Targets of an Anti-pathogenic Hydroalcoholic Extract of Punica granatum Peel Against Multidrug-resistant Serratia marcescens. Curr Drug Discov Technol 2020; 18:391-404. [PMID: 32316896 DOI: 10.2174/1568009620666200421083120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 03/26/2020] [Accepted: 03/27/2020] [Indexed: 11/22/2022]
Abstract
BACKGROUND Antibiotic-resistant members of the family Enterobacteriaceae are among the serious threats to human health globally. This study reports the anti-pathogenic activity of Punica granatum peel extract (PGPE) against a multi-drug resistant, beta-lactamase producing member of this family i.e. Serratia marcescens. OBJECTIVE This study aimed at assessing the anti-pathogenic activity of PGPE against the gramnegative bacterial pathogen S. marcescens and identifying the molecular targets of this extract in the test bacterium. METHODS Effect of PGPE on S. marcescens growth and quorum sensing (QS)-regulated pigment production was assessed through broth dilution assay. In vivo anti-infective and prophylactic activity of PGPE was assessed employing the nematode worm Caenorhabditis elegans as a model host. Differential gene expression in PGPE-exposed S. marcescens was studied through a whole transcriptome approach. RESULTS PGPE was able to modulate QS-regulated pigment production in S. marcescens without exerting any heavy growth-inhibitory effect at concentrations as low as ≥2.5 μg/mL. It could attenuate the virulence of the test bacterium towards the worm host by 22-42% (p≤0.01) at even lower concentrations (≥0.5 μg/mL). PGPE also exerted a post-extract effect on S. marcescens. This extract was found to offer prophylactic benefit too, to the host worm, as PGPE-pre-fed worms scored better (34-51%; p≤0.001) survival in face of subsequent bacterial attack. Differential gene expression analysis revealed that PGPE affected the expression of a total of 66 genes in S. marcescens by ≥1.5 fold. CONCLUSION The anti-virulence effect of PGPE against S. marcescens is multifaceted, affecting stress-response machinery, efflux activity, iron homeostasis, and cellular energetics of this bacterium notably. Among the major molecular targets identified in this study are LPS export transporter permease (LptF), t-RNA pseudouridine synthase (TruB), etc.
Collapse
Affiliation(s)
- Chinmayi Joshi
- Institute of Science, Nirma University, Ahmedabad- 382481, India
| | - Pooja Patel
- Institute of Science, Nirma University, Ahmedabad- 382481, India
| | | | | | - Vijay Kothari
- Institute of Science, Nirma University, Ahmedabad- 382481, India
| |
Collapse
|
5
|
Kothari V. Adopting an Anti-virulence (anti-pathogenicity) Approach for Dealing with the Problem of Antimicrobial Resistance. Recent Pat Biotechnol 2019; 13:252-255. [PMID: 31724931 DOI: 10.2174/187220831304191025092737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Vijay Kothari
- Institute of Science, Nirma University, Ahmedabad, India
| |
Collapse
|
6
|
Patel H, Patel F, Jani V, Jha N, Ansari A, Paliwal B, Rathod B, Patel D, Patel P, Kothari V. Anti-pathogenic potential of a classical ayurvedic Triphala formulation. F1000Res 2019; 8:1126. [PMID: 33093941 PMCID: PMC7549186 DOI: 10.12688/f1000research.19787.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/22/2020] [Indexed: 11/20/2022] Open
Abstract
A classical
ayurvedic polyherbal formulation namely
Triphala was assessed for its anti-pathogenic potential against five different pathogenic bacteria. Virulence of four of them towards the model host
Caenorhabditis elegans was attenuated (by 18-45%) owing to pre-treatment with
Triphala Formulation (TF) (≤20 µg/ml). TF
could also exert significant therapeutic effect on worms already infected with
Chromobacterium violaceum (MTCC 2656),
Serratia marcescens (MTCC 97) or
Staphylococcus aureus (MTCC 737). Prophylactic use of TF
allowed worms to score 14-41% better survival in face of subsequent pathogen challenge. Repeated exposure to this formulation induced resistance in
S. marcescens, but not in
P. aeruginosa. It also exerted a post-extract effect (PEE) on three of the test pathogens. TF was able to modulate production of quorum sensing (QS)-regulated pigments in three of the multidrug-resistant gram-negative test bacteria. Haemolytic activity of
S. aureus was heavily inhibited under the influence of this formulation.
P. aeruginosa's lysozyme-susceptibility was found to increase by ~25-43% upon TF-pretreatment. These results validate therapeutic potential of one of the most widely used polyherbal
ayurvedic formulations called
Triphala.
Collapse
Affiliation(s)
- Hinal Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Foram Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Vinit Jani
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Neha Jha
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Afsa Ansari
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Bhumika Paliwal
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Bharatsingh Rathod
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Dhruvi Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Pooja Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Vijay Kothari
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| |
Collapse
|
7
|
Patel H, Patel F, Jani V, Jha N, Ansari A, Paliwal B, Rathod B, Patel D, Patel P, Kothari V. Anti-pathogenic potential of a classical ayurvedic Triphala formulation. F1000Res 2019; 8:1126. [PMID: 33093941 PMCID: PMC7549186 DOI: 10.12688/f1000research.19787.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/22/2020] [Indexed: 08/27/2023] Open
Abstract
A classical ayurvedic polyherbal formulation namely Triphala was assessed for its anti-pathogenic potential against five different pathogenic bacteria. Virulence of four of them towards the model host Caenorhabditis elegans was attenuated (by 18-45%) owing to pre-treatment with Triphala Formulation (TF) (≤20 µg/ml). TF could also exert significant therapeutic effect on worms already infected with Chromobacterium violaceum (MTCC 2656), Serratia marcescens (MTCC 97) or Staphylococcus aureus (MTCC 737). Prophylactic use of TF allowed worms to score 14-41% better survival in face of subsequent pathogen challenge. Repeated exposure to this formulation induced resistance in S. marcescens, but not in P. aeruginosa. It also exerted a post-extract effect (PEE) on three of the test pathogens. TF was able to modulate production of quorum sensing (QS)-regulated pigments in three of the multidrug-resistant gram-negative test bacteria. Haemolytic activity of S. aureus was heavily inhibited under the influence of this formulation. P. aeruginosa's lysozyme-susceptibility was found to increase by ~25-43% upon TF-pretreatment. These results validate therapeutic potential of one of the most widely used polyherbal ayurvedic formulations called Triphala.
Collapse
Affiliation(s)
- Hinal Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Foram Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Vinit Jani
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Neha Jha
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Afsa Ansari
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Bhumika Paliwal
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Bharatsingh Rathod
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Dhruvi Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Pooja Patel
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| | - Vijay Kothari
- Institute of Science, Nirma University, Ahmedabad, Gujarat, 382481, India
| |
Collapse
|