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Ekong F, Yu Y, Patamia RA, Sarpong K, Ukwuoma CC, Ukot AR, Cai J. RetVes segmentation: A pseudo-labeling and feature knowledge distillation optimization technique for retinal vessel channel enhancement. Comput Biol Med 2024; 182:109150. [PMID: 39298884 DOI: 10.1016/j.compbiomed.2024.109150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 08/30/2024] [Accepted: 09/10/2024] [Indexed: 09/22/2024]
Abstract
Recent advancements in retinal vessel segmentation, which employ transformer-based and domain-adaptive approaches, show promise in addressing the complexity of ocular diseases such as diabetic retinopathy. However, current algorithms face challenges in effectively accommodating domain-specific variations and limitations of training datasets, which fail to represent real-world conditions comprehensively. Manual inspection by specialists remains time-consuming despite technological progress in medical imaging, underscoring the pressing need for automated and robust segmentation techniques. Additionally, these methods have deficiencies in handling unlabeled target sets, requiring extra preprocessing steps and manual intervention, which hinders their scalability and practical application in clinical settings. This research introduces a novel framework that employs semi-supervised domain adaptation and contrastive pre-training to address these limitations. The proposed model effectively learns from target data by implementing a novel pseudo-labeling approach and feature-based knowledge distillation within a temporal convolutional network (TCN) and extracts robust, domain-independent features. This approach enhances cross-domain adaptation, significantly enhancing the model's versatility and performance in clinical settings. The semi-supervised domain adaptation component overcomes the challenges posed by domain shifts, while pseudo-labeling utilizes the data's inherent structure for enhanced learning, which is particularly beneficial when labeled data is scarce. Evaluated on the DRIVE and CHASE_DB1 datasets, which contain clinical fundus images, the proposed model achieves outstanding performance, with accuracy, sensitivity, specificity, and AUC values of 0.9792, 0.8640, 0.9901, and 0.9868 on DRIVE, and 0.9830, 0.9058, 0.9888, and 0.9950 on CHASE_DB1, respectively, outperforming current state-of-the-art vessel segmentation methods. The partitioning of datasets into training and testing sets ensures thorough validation, while extensive ablation studies with thorough sensitivity analysis of the model's parameters and different percentages of labeled data further validate its robustness.
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Affiliation(s)
- Favour Ekong
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.
| | - Yongbin Yu
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.
| | - Rutherford Agbeshi Patamia
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.
| | - Kwabena Sarpong
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.
| | - Chiagoziem C Ukwuoma
- College of Nuclear Technology and Automation Engineering, Chengdu University of Technology, Chengdu, 610059, Sichuan, China; Sichuan Engineering Technology Research Center for Industrial Internet Intelligent Monitoring and Application, Chengdu University of Technology, Chengdu, 610059, Sichuan, China.
| | - Akpanika Robert Ukot
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.
| | - Jingye Cai
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.
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Wang Y, Li H. A Novel Single-Sample Retinal Vessel Segmentation Method Based on Grey Relational Analysis. SENSORS (BASEL, SWITZERLAND) 2024; 24:4326. [PMID: 39001106 PMCID: PMC11244310 DOI: 10.3390/s24134326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 06/23/2024] [Accepted: 07/02/2024] [Indexed: 07/16/2024]
Abstract
Accurate segmentation of retinal vessels is of great significance for computer-aided diagnosis and treatment of many diseases. Due to the limited number of retinal vessel samples and the scarcity of labeled samples, and since grey theory excels in handling problems of "few data, poor information", this paper proposes a novel grey relational-based method for retinal vessel segmentation. Firstly, a noise-adaptive discrimination filtering algorithm based on grey relational analysis (NADF-GRA) is designed to enhance the image. Secondly, a threshold segmentation model based on grey relational analysis (TS-GRA) is designed to segment the enhanced vessel image. Finally, a post-processing stage involving hole filling and removal of isolated pixels is applied to obtain the final segmentation output. The performance of the proposed method is evaluated using multiple different measurement metrics on publicly available digital retinal DRIVE, STARE and HRF datasets. Experimental analysis showed that the average accuracy and specificity on the DRIVE dataset were 96.03% and 98.51%. The mean accuracy and specificity on the STARE dataset were 95.46% and 97.85%. Precision, F1-score, and Jaccard index on the HRF dataset all demonstrated high-performance levels. The method proposed in this paper is superior to the current mainstream methods.
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Affiliation(s)
- Yating Wang
- School of Information Science and Technology, Nantong University, Nantong 226019, China
| | - Hongjun Li
- School of Information Science and Technology, Nantong University, Nantong 226019, China
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Mahapatra S, Agrawal S, Mishro PK, Panda R, Dora L, Pachori RB. A Review on Retinal Blood Vessel Enhancement and Segmentation Techniques for Color Fundus Photography. Crit Rev Biomed Eng 2024; 52:41-69. [PMID: 37938183 DOI: 10.1615/critrevbiomedeng.2023049348] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
The retinal image is a trusted modality in biomedical image-based diagnosis of many ophthalmologic and cardiovascular diseases. Periodic examination of the retina can help in spotting these abnormalities in the early stage. However, to deal with today's large population, computerized retinal image analysis is preferred over manual inspection. The precise extraction of the retinal vessel is the first and decisive step for clinical applications. Every year, many more articles are added to the literature that describe new algorithms for the problem at hand. The majority of the review article is restricted to a fairly small number of approaches, assessment indices, and databases. In this context, a comprehensive review of different vessel extraction methods is inevitable. It includes the development of a first-hand classification of these methods. A bibliometric analysis of these articles is also presented. The benefits and drawbacks of the most commonly used techniques are summarized. The primary challenges, as well as the scope of possible changes, are discussed. In order to make a fair comparison, numerous assessment indices are considered. The findings of this survey could provide a new path for researchers for further work in this domain.
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Affiliation(s)
- Sakambhari Mahapatra
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Sanjay Agrawal
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Pranaba K Mishro
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Rutuparna Panda
- Department of Electronics and Telecommunication Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Lingraj Dora
- Department of Electrical and Electronics Engineering, Veer Surendra Sai University of Technology, Burla, India
| | - Ram Bilas Pachori
- Department of Electrical Engineering, Indian Institute of Technology Indore, Indore, India
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Multifilters-Based Unsupervised Method for Retinal Blood Vessel Segmentation. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12136393] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
Fundus imaging is one of the crucial methods that help ophthalmologists for diagnosing the various eye diseases in modern medicine. An accurate vessel segmentation method can be a convenient tool to foresee and analyze fatal diseases, including hypertension or diabetes, which damage the retinal vessel’s appearance. This work suggests an unsupervised approach for vessels segmentation out of retinal images. The proposed method includes multiple steps. Firstly, from the colored retinal image, green channel is extracted and preprocessed utilizing Contrast Limited Histogram Equalization as well as Fuzzy Histogram Based Equalization for contrast enhancement. To expel geometrical articles (macula, optic disk) and noise, top-hat morphological operations are used. On the resulted enhanced image, matched filter and Gabor wavelet filter are applied, and the outputs from both is added to extract vessels pixels. The resulting image with the now noticeable blood vessel is binarized using human visual system (HVS). A final image of segmented blood vessel is obtained by applying post-processing. The suggested method is assessed on two public datasets (DRIVE and STARE) and showed comparable results with regard to sensitivity, specificity and accuracy. The results we achieved with respect to sensitivity, specificity together with accuracy on DRIVE database are 0.7271, 0.9798 and 0.9573, and on STARE database these are 0.7164, 0.9760, and 0.9560, respectively, in less than 3.17 s on average per image.
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Diagnostic Value of Coronary Computed Tomography Angiography Image under Automatic Segmentation Algorithm for Restenosis after Coronary Stenting. CONTRAST MEDIA & MOLECULAR IMAGING 2022; 2022:7013703. [PMID: 35510177 PMCID: PMC9034947 DOI: 10.1155/2022/7013703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 03/23/2022] [Indexed: 11/17/2022]
Abstract
The diagnostic efficacy of coronary computed tomography angiography (CTA) images of coronary arteries in restenosis after coronary stenting based on the combination of the convolutional neural network (CNN) algorithm and the automatic segmentation algorithm for region growth of vascular similarity features was explored to provide a more effective diagnostic method for patients. 130 patients with coronary artery disease were randomly selected as the research objects, and they were averagely classified into the control group (conventional coronary CTA image diagnosis) and the observation group (coronary CTA image diagnosis based on an improved automatic segmentation algorithm). Based on the diagnostic criteria of coronary angiography (CAG), the efficacy of two kinds of coronary CTA images on the postoperative subsequent visit of coronary heart disease (CHD) stenting was evaluated. The results showed that the accuracy of the CNN algorithm was 87.89%, and the average voxel error of the improved algorithm was signally lower than that of the traditional algorithm (1.8921 HU/voxel vs. 7.10091 HU/voxel) (p < 0.05). The average score of the coronary CTA image in the observation group was higher than that in the control group (2.89 ± 0.11 points vs. 2.01 ± 0.73 points) (p < 0.05). The diagnostic sensitivity (91.43%), specificity (86.76%), positive predictive value (88.89%), negative predictive value (89.66%), and accuracy (89.23%) of the observation group were higher than those of the control group (p < 0.05). In conclusion, the region growth algorithm under the CNN algorithm and vascular similarity features had an accurate segmentation effect, which was helpful for the diagnosis of CTA image in restenosis after coronary stenting.
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