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Ullah Z, Jamjoom M, Thirumalaisamy M, Alajmani SH, Saleem F, Sheikh-Akbari A, Khan UA. A Deep Learning Based Intelligent Decision Support System for Automatic Detection of Brain Tumor. Biomed Eng Comput Biol 2024; 15:11795972241277322. [PMID: 39238891 PMCID: PMC11375672 DOI: 10.1177/11795972241277322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 08/06/2024] [Indexed: 09/07/2024] Open
Abstract
Brain tumor (BT) is an awful disease and one of the foremost causes of death in human beings. BT develops mainly in 2 stages and varies by volume, form, and structure, and can be cured with special clinical procedures such as chemotherapy, radiotherapy, and surgical mediation. With revolutionary advancements in radiomics and research in medical imaging in the past few years, computer-aided diagnostic systems (CAD), especially deep learning, have played a key role in the automatic detection and diagnosing of various diseases and significantly provided accurate decision support systems for medical clinicians. Thus, convolution neural network (CNN) is a commonly utilized methodology developed for detecting various diseases from medical images because it is capable of extracting distinct features from an image under investigation. In this study, a deep learning approach is utilized to extricate distinct features from brain images in order to detect BT. Hence, CNN from scratch and transfer learning models (VGG-16, VGG-19, and LeNet-5) are developed and tested on brain images to build an intelligent decision support system for detecting BT. Since deep learning models require large volumes of data, data augmentation is used to populate the existing dataset synthetically in order to utilize the best fit detecting models. Hyperparameter tuning was conducted to set the optimum parameters for training the models. The achieved results show that VGG models outperformed others with an accuracy rate of 99.24%, average precision of 99%, average recall of 99%, average specificity of 99%, and average f1-score of 99% each. The results of the proposed models compared to the other state-of-the-art models in the literature show better performance of the proposed models in terms of accuracy, sensitivity, specificity, and f1-score. Moreover, comparative analysis shows that the proposed models are reliable in that they can be used for detecting BT as well as helping medical practitioners to diagnose BT.
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Affiliation(s)
- Zahid Ullah
- Information Systems Department, College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University, Riyadh, Saudi Arabia
| | - Mona Jamjoom
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | | | - Samah H Alajmani
- Department of Information Technology, College of Computers and Information Technology, Taif University, Taif, Saudi Arabia
| | - Farrukh Saleem
- School of Built Environment, Engineering, and Computing, Leeds Beckett University, Leeds, UK
| | - Akbar Sheikh-Akbari
- School of Built Environment, Engineering, and Computing, Leeds Beckett University, Leeds, UK
| | - Usman Ali Khan
- Department of Information Systems, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Saudi Arabia
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Piao Z, Meng M, Yang H, Xue T, Jia Z, Liu W. Distinguishing between aldosterone-producing adenomas and non-functional adrenocortical adenomas using the YOLOv5 network. Acta Radiol 2024; 65:1007-1014. [PMID: 38767055 DOI: 10.1177/02841851241251446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]
Abstract
BACKGROUND You Only Look Once version 5 (YOLOv5), a one-stage deep-learning (DL) algorithm for object detection and classification, offers high speed and accuracy for identifying targets. PURPOSE To investigate the feasibility of using the YOLOv5 algorithm to non-invasively distinguish between aldosterone-producing adenomas (APAs) and non-functional adrenocortical adenomas (NF-ACAs) on computed tomography (CT) images. MATERIAL AND METHODS A total of 235 patients who were diagnosed with ACAs between January 2011 and July 2022 were included in this study. Of the 215 patients, 81 (37.7%) had APAs and 134 (62.3%) had NF-ACAs' they were randomly divided into either the training set or the validation set at a ratio of 9:1. Another 20 patients, including 8 (40.0%) with APA and 12 (60.0%) with NF-ACA, were collected for the testing set. Five submodels (YOLOv5n, YOLOv5s, YOLOv5m, YOLOv5l, and YOLOv5x) of YOLOv5 were trained and evaluated on the datasets. RESULTS In the testing set, the mAP_0.5 value for YOLOv5x (0.988) was higher than the values for YOLOv5n (0.969), YOLOv5s (0.965), YOLOv5m (0.974), and YOLOv5l (0.983). The mAP_0.5:0.95 value for YOLOv5x (0.711) was also higher than the values for YOLOv5n (0.587), YOLOv5s (0.674), YOLOv5m (0.671), and YOLOv5l (0.698) in the testing set. The inference speed of YOLOv5n was 2.4 ms in the testing set, which was the fastest among the five submodels. CONCLUSION The YOLOv5 algorithm can accurately and efficiently distinguish between APAs and NF-ACAs on CT images, especially YOLOv5x has the best identification performance.
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Affiliation(s)
- Zeyu Piao
- Graduate College, Dalian Medical University, Dalian, PR China
- Department of Radiology, The Affiliated Changzhou Second People's Hospital of Nanjing Medical University, Changzhou, PR China
| | - Mingzhu Meng
- Department of Radiology, The Affiliated Changzhou Second People's Hospital of Nanjing Medical University, Changzhou, PR China
| | - Huijie Yang
- Department of Endocrinology, The Affiliated Changzhou Second People's Hospital of Nanjing Medical University, Changzhou, PR China
| | - Tongqing Xue
- Department of Interventional Radiology, Huaian Hospital of Huai'an City, Huai'an, PR China
| | - Zhongzhi Jia
- Department of Interventional and Vascular Surgery, The Affiliated Changzhou Second People's Hospital of Nanjing Medical University, Changzhou, PR China
| | - Wei Liu
- Department of Radiology, The Affiliated Changzhou Second People's Hospital of Nanjing Medical University, Changzhou, PR China
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Abdusalomov A, Rakhimov M, Karimberdiyev J, Belalova G, Cho YI. Enhancing Automated Brain Tumor Detection Accuracy Using Artificial Intelligence Approaches for Healthcare Environments. Bioengineering (Basel) 2024; 11:627. [PMID: 38927863 PMCID: PMC11201188 DOI: 10.3390/bioengineering11060627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/09/2024] [Accepted: 06/17/2024] [Indexed: 06/28/2024] Open
Abstract
Medical imaging and deep learning models are essential to the early identification and diagnosis of brain cancers, facilitating timely intervention and improving patient outcomes. This research paper investigates the integration of YOLOv5, a state-of-the-art object detection framework, with non-local neural networks (NLNNs) to improve brain tumor detection's robustness and accuracy. This study begins by curating a comprehensive dataset comprising brain MRI scans from various sources. To facilitate effective fusion, the YOLOv5 and NLNNs, K-means+, and spatial pyramid pooling fast+ (SPPF+) modules are integrated within a unified framework. The brain tumor dataset is used to refine the YOLOv5 model through the application of transfer learning techniques, adapting it specifically to the task of tumor detection. The results indicate that the combination of YOLOv5 and other modules results in enhanced detection capabilities in comparison to the utilization of YOLOv5 exclusively, proving recall rates of 86% and 83% respectively. Moreover, the research explores the interpretability aspect of the combined model. By visualizing the attention maps generated by the NLNNs module, the regions of interest associated with tumor presence are highlighted, aiding in the understanding and validation of the decision-making procedure of the methodology. Additionally, the impact of hyperparameters, such as NLNNs kernel size, fusion strategy, and training data augmentation, is investigated to optimize the performance of the combined model.
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Affiliation(s)
- Akmalbek Abdusalomov
- Department of Computer Engineering, Gachon University, Sujeong-gu, Seongnam-si 13120, Gyeonggi-do, Republic of Korea;
| | - Mekhriddin Rakhimov
- Department of Artificial Intelligence, Tashkent University of Information Technologies Named after Muhammad Al-Khwarizmi, Tashkent 100200, Uzbekistan; (M.R.); (J.K.)
| | - Jakhongir Karimberdiyev
- Department of Artificial Intelligence, Tashkent University of Information Technologies Named after Muhammad Al-Khwarizmi, Tashkent 100200, Uzbekistan; (M.R.); (J.K.)
| | - Guzal Belalova
- Department of Information Systems and Technologies, Tashkent State University of Economics, Tashkent 100066, Uzbekistan;
| | - Young Im Cho
- Department of Computer Engineering, Gachon University, Sujeong-gu, Seongnam-si 13120, Gyeonggi-do, Republic of Korea;
- Department of Information Systems and Technologies, Tashkent State University of Economics, Tashkent 100066, Uzbekistan;
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Abraham A, Jose R, Farooqui N, Mayer J, Ahmad J, Satti Z, Jacob TJ, Syed F, Toma M. The Role of ArtificiaI Intelligence in Brain Tumor Diagnosis: An Evaluation of a Machine Learning Model. Cureus 2024; 16:e61483. [PMID: 38952601 PMCID: PMC11215798 DOI: 10.7759/cureus.61483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/01/2024] [Indexed: 07/03/2024] Open
Abstract
This research study explores of the effectiveness of a machine learning image classification model in the accurate identification of various types of brain tumors. The types of tumors under consideration in this study are gliomas, meningiomas, and pituitary tumors. These are some of the most common types of brain tumors and pose significant challenges in terms of accurate diagnosis and treatment. The machine learning model that is the focus of this study is built on the Google Teachable Machine platform (Alphabet Inc., Mountain View, CA). The Google Teachable Machine is a machine learning image classification platform that is built from Tensorflow, a popular open-source platform for machine learning. The Google Teachable Machine model was specifically evaluated for its ability to differentiate between normal brains and the aforementioned types of tumors in MRI images. MRI images are a common tool in the diagnosis of brain tumors, but the challenge lies in the accurate classification of the tumors. This is where the machine learning model comes into play. The model is trained to recognize patterns in the MRI images that correspond to the different types of tumors. The performance of the machine learning model was assessed using several metrics. These include precision, recall, and F1 score. These metrics were generated from a confusion matrix analysis and performance graphs. A confusion matrix is a table that is often used to describe the performance of a classification model. Precision is a measure of the model's ability to correctly identify positive instances among all instances it identified as positive. Recall, on the other hand, measures the model's ability to correctly identify positive instances among all actual positive instances. The F1 score is a measure that combines precision and recall providing a single metric for model performance. The results of the study were promising. The Google Teachable Machine model demonstrated high performance, with accuracy, precision, recall, and F1 scores ranging between 0.84 and 1.00. This suggests that the model is highly effective in accurately classifying the different types of brain tumors. This study provides insights into the potential of machine learning models in the accurate classification of brain tumors. The findings of this study lay the groundwork for further research in this area and have implications for the diagnosis and treatment of brain tumors. The study also highlights the potential of machine learning in enhancing the field of medical imaging and diagnosis. With the increasing complexity and volume of medical data, machine learning models like the one evaluated in this study could play a crucial role in improving the accuracy and efficiency of diagnoses. Furthermore, the study underscores the importance of continued research and development in this field to further refine these models and overcome any potential limitations or challenges. Overall, the study contributes to the field of medical imaging and machine learning and sets the stage for future research and advancements in this area.
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Affiliation(s)
- Adriel Abraham
- Department of Internal Medicine, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Rejath Jose
- Department of Internal Medicine, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Nabeel Farooqui
- Department of Computer and Information Science, University of Pennsylvania School of Engineering and Applied Science, Philadelphia, USA
| | - Jonathan Mayer
- Department of Clinical Sciences, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Jawad Ahmad
- Department of Clinical Sciences, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Zain Satti
- Department of Clinical Sciences, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Thomas J Jacob
- Department of Internal Medicine, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Faiz Syed
- Department of Internal Medicine, New York Institute of Technology College of Osteopathic Medicine, New York, USA
| | - Milan Toma
- Department of Osteopathic Manipulative Medicine, New York Institute of Technology College of Osteopathic Medicine, New York, USA
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Krishnapriya S, Karuna Y. A deep learning model for the localization and extraction of brain tumors from MR images using YOLOv7 and grab cut algorithm. Front Oncol 2024; 14:1347363. [PMID: 38680854 PMCID: PMC11045991 DOI: 10.3389/fonc.2024.1347363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 03/25/2024] [Indexed: 05/01/2024] Open
Abstract
Introduction Brain tumors are a common disease that affects millions of people worldwide. Considering the severity of brain tumors (BT), it is important to diagnose the disease in its early stages. With advancements in the diagnostic process, Magnetic Resonance Imaging (MRI) has been extensively used in disease detection. However, the accurate identification of BT is a complex task, and conventional techniques are not sufficiently robust to localize and extract tumors in MRI images. Therefore, in this study, we used a deep learning model combined with a segmentation algorithm to localize and extract tumors from MR images. Method This paper presents a Deep Learning (DL)-based You Look Only Once (YOLOv7) model in combination with the Grab Cut algorithm to extract the foreground of the tumor image to enhance the detection process. YOLOv7 is used to localize the tumor region, and the Grab Cut algorithm is used to extract the tumor from the localized region. Results The performance of the YOLOv7 model with and without the Grab Cut algorithm is evaluated. The results show that the proposed approach outperforms other techniques, such as hybrid CNN-SVM, YOLOv5, and YOLOv6, in terms of accuracy, precision, recall, specificity, and F1 score. Discussion Our results show that the proposed technique achieves a high dice score between tumor-extracted images and ground truth images. The findings show that the performance of the YOLOv7 model is improved by the inclusion of the Grab Cut algorithm compared to the performance of the model without the algorithm.
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Affiliation(s)
| | - Yepuganti Karuna
- School of Electronics Engineering, Vellore Institute of Technology, Vellore, India
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Srinivasan S, Francis D, Mathivanan SK, Rajadurai H, Shivahare BD, Shah MA. A hybrid deep CNN model for brain tumor image multi-classification. BMC Med Imaging 2024; 24:21. [PMID: 38243215 PMCID: PMC10799524 DOI: 10.1186/s12880-024-01195-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 01/08/2024] [Indexed: 01/21/2024] Open
Abstract
The current approach to diagnosing and classifying brain tumors relies on the histological evaluation of biopsy samples, which is invasive, time-consuming, and susceptible to manual errors. These limitations underscore the pressing need for a fully automated, deep-learning-based multi-classification system for brain malignancies. This article aims to leverage a deep convolutional neural network (CNN) to enhance early detection and presents three distinct CNN models designed for different types of classification tasks. The first CNN model achieves an impressive detection accuracy of 99.53% for brain tumors. The second CNN model, with an accuracy of 93.81%, proficiently categorizes brain tumors into five distinct types: normal, glioma, meningioma, pituitary, and metastatic. Furthermore, the third CNN model demonstrates an accuracy of 98.56% in accurately classifying brain tumors into their different grades. To ensure optimal performance, a grid search optimization approach is employed to automatically fine-tune all the relevant hyperparameters of the CNN models. The utilization of large, publicly accessible clinical datasets results in robust and reliable classification outcomes. This article conducts a comprehensive comparison of the proposed models against classical models, such as AlexNet, DenseNet121, ResNet-101, VGG-19, and GoogleNet, reaffirming the superiority of the deep CNN-based approach in advancing the field of brain tumor classification and early detection.
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Affiliation(s)
- Saravanan Srinivasan
- Department of Computer Science and Engineering, Vel Tech Rangarajan Dr.Sagunthala R&D Institute of Science and Technology, Chennai, 600062, India
| | - Divya Francis
- Department of Electronics and Communication Engineering, PSNA College of Engineering and Technology, Dindigul, 624622, India
| | | | - Hariharan Rajadurai
- School of Computing Science and Engineering, VIT Bhopal University, Bhopal-Indore Highway Kothrikalan, Sehore, 466114, India
| | - Basu Dev Shivahare
- School of Computing Science and Engineering, Galgotias University, Greater Noida, 203201, India
| | - Mohd Asif Shah
- Department of Economics, Kabridahar University, Po Box 250, Kebri Dehar, Ethiopia.
- Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura, Punjab, 140401, India.
- Division of Research and Development, Lovely Professional University, Phagwara, Punjab, 144001, India.
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Jyothi P, Dhanasekaran S. An attention 3DUNET and visual geometry group-19 based deep neural network for brain tumor segmentation and classification from MRI. J Biomol Struct Dyn 2023:1-12. [PMID: 37979152 DOI: 10.1080/07391102.2023.2283164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 11/06/2023] [Indexed: 11/20/2023]
Abstract
There has been an abrupt increase in brain tumor (BT) related medical cases during the past ten years. The tenth most typical type of tumor affecting millions of people is the BT. The cure rate can, however, rise if it is found early. When evaluating BT diagnosis and treatment options, MRI is a crucial tool. However, segmenting the tumors from magnetic resonance (MR) images is complex. The advancement of deep learning (DL) has led to the development of numerous automatic segmentation and classification approaches. However, most need improvement since they are limited to 2D images. So, this article proposes a novel and optimal DL system for segmenting and classifying the BTs from 3D brain MR images. Preprocessing, segmentation, feature extraction, feature selection, and tumor classification are the main phases of the proposed work. Preprocessing, such as noise removal, is performed on the collected brain MR images using bilateral filtering. The tumor segmentation uses spatial and channel attention-based three-dimensional u-shaped network (SC3DUNet) to segment the tumor lesions from the preprocessed data. After that, the feature extraction is done based on dilated convolution-based visual geometry group-19 (DCVGG-19), making the classification task more manageable. The optimal features are selected from the extracted feature sets using diagonal linear uniform and tangent flight included butterfly optimization algorithm. Finally, the proposed system applies an optimal hyperparameters-based deep neural network to classify the tumor classes. The experiments conducted on the BraTS2020 dataset show that the suggested method can segment tumors and categorize them more accurately than the existing state-of-the-art mechanisms.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Parvathy Jyothi
- Department of Computer Science and Engineering, Kalasalingam Academy of Research and Education, Krishnankoil, India
| | - S Dhanasekaran
- Department of Information Technology, Kalasalingam Academy of Research and Education, Krishnankoil, India
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Sahoo S, Mishra S, Panda B, Bhoi AK, Barsocchi P. An Augmented Modulated Deep Learning Based Intelligent Predictive Model for Brain Tumor Detection Using GAN Ensemble. SENSORS (BASEL, SWITZERLAND) 2023; 23:6930. [PMID: 37571713 PMCID: PMC10422344 DOI: 10.3390/s23156930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/25/2023] [Accepted: 07/28/2023] [Indexed: 08/13/2023]
Abstract
Brain tumor detection in the initial stage is becoming an intricate task for clinicians worldwide. The diagnosis of brain tumor patients is rigorous in the later stages, which is a serious concern. Although there are related pragmatic clinical tools and multiple models based on machine learning (ML) for the effective diagnosis of patients, these models still provide less accuracy and take immense time for patient screening during the diagnosis process. Hence, there is still a need to develop a more precise model for more accurate screening of patients to detect brain tumors in the beginning stages and aid clinicians in diagnosis, making the brain tumor assessment more reliable. In this research, a performance analysis of the impact of different generative adversarial networks (GAN) on the early detection of brain tumors is presented. Based on it, a novel hybrid enhanced predictive convolution neural network (CNN) model using a hybrid GAN ensemble is proposed. Brain tumor image data is augmented using a GAN ensemble, which is fed for classification using a hybrid modulated CNN technique. The outcome is generated through a soft voting approach where the final prediction is based on the GAN, which computes the highest value for different performance metrics. This analysis demonstrated that evaluation with a progressive-growing generative adversarial network (PGGAN) architecture produced the best result. In the analysis, PGGAN outperformed others, computing the accuracy, precision, recall, F1-score, and negative predictive value (NPV) to be 98.85, 98.45%, 97.2%, 98.11%, and 98.09%, respectively. Additionally, a very low latency of 3.4 s is determined with PGGAN. The PGGAN model enhanced the overall performance of the identification of brain cell tissues in real time. Therefore, it may be inferred to suggest that brain tumor detection in patients using PGGAN augmentation with the proposed modulated CNN technique generates the optimum performance using the soft voting approach.
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Affiliation(s)
- Saswati Sahoo
- School of Computer Engineering, KIIT Deemed to be University, Bhubaneswar 751024, India;
| | - Sushruta Mishra
- School of Computer Engineering, KIIT Deemed to be University, Bhubaneswar 751024, India;
| | - Baidyanath Panda
- LTIMindtree, 1 American Row, 3rd Floor, Hartford, CT 06103, USA;
| | - Akash Kumar Bhoi
- Directorate of Research, Sikkim Manipal University, Gangtok 737102, India;
- KIET Group of Institutions, Delhi-NCR, Ghaziabad 201206, India
- Institute of Information Science and Technologies, National Research Council, 56124 Pisa, Italy
| | - Paolo Barsocchi
- Institute of Information Science and Technologies, National Research Council, 56124 Pisa, Italy
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Terzi DS, Azginoglu N. In-Domain Transfer Learning Strategy for Tumor Detection on Brain MRI. Diagnostics (Basel) 2023; 13:2110. [PMID: 37371005 DOI: 10.3390/diagnostics13122110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 06/16/2023] [Accepted: 06/16/2023] [Indexed: 06/29/2023] Open
Abstract
Transfer learning has gained importance in areas where there is a labeled data shortage. However, it is still controversial as to what extent natural image datasets as pre-training sources contribute scientifically to success in different fields, such as medical imaging. In this study, the effect of transfer learning for medical object detection was quantitatively compared using natural and medical image datasets. Within the scope of this study, transfer learning strategies based on five different weight initialization methods were discussed. A natural image dataset MS COCO and brain tumor dataset BraTS 2020 were used as the transfer learning source, and Gazi Brains 2020 was used for the target. Mask R-CNN was adopted as a deep learning architecture for its capability to effectively handle both object detection and segmentation tasks. The experimental results show that transfer learning from the medical image dataset was found to be 10% more successful and showed 24% better convergence performance than the MS COCO pre-trained model, although it contains fewer data. While the effect of data augmentation on the natural image pre-trained model was 5%, the same domain pre-trained model was measured as 2%. According to the most widely used object detection metric, transfer learning strategies using MS COCO weights and random weights showed the same object detection performance as data augmentation. The performance of the most effective strategies identified in the Mask R-CNN model was also tested with YOLOv8. Results showed that even if the amount of data is less than the natural dataset, in-domain transfer learning is more efficient than cross-domain transfer learning. Moreover, this study demonstrates the first use of the Gazi Brains 2020 dataset, which was generated to address the lack of labeled and qualified brain MRI data in the medical field for in-domain transfer learning. Thus, knowledge transfer was carried out from the deep neural network, which was trained with brain tumor data and tested on a different brain tumor dataset.
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Affiliation(s)
- Duygu Sinanc Terzi
- Department of Computer Engineering, Amasya University, Amasya 05100, Turkey
| | - Nuh Azginoglu
- Department of Computer Engineering, Kayseri University, Kayseri 38280, Turkey
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Rajinikanth V, Vincent PMDR, Gnanaprakasam CN, Srinivasan K, Chang CY. Brain Tumor Class Detection in Flair/T2 Modality MRI Slices Using Elephant-Herd Algorithm Optimized Features. Diagnostics (Basel) 2023; 13:diagnostics13111832. [PMID: 37296683 DOI: 10.3390/diagnostics13111832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 05/08/2023] [Accepted: 05/19/2023] [Indexed: 06/12/2023] Open
Abstract
Several advances in computing facilities were made due to the advancement of science and technology, including the implementation of automation in multi-specialty hospitals. This research aims to develop an efficient deep-learning-based brain-tumor (BT) detection scheme to detect the tumor in FLAIR- and T2-modality magnetic-resonance-imaging (MRI) slices. MRI slices of the axial-plane brain are used to test and verify the scheme. The reliability of the developed scheme is also verified through clinically collected MRI slices. In the proposed scheme, the following stages are involved: (i) pre-processing the raw MRI image, (ii) deep-feature extraction using pretrained schemes, (iii) watershed-algorithm-based BT segmentation and mining the shape features, (iv) feature optimization using the elephant-herding algorithm (EHA), and (v) binary classification and verification using three-fold cross-validation. Using (a) individual features, (b) dual deep features, and (c) integrated features, the BT-classification task is accomplished in this study. Each experiment is conducted separately on the chosen BRATS and TCIA benchmark MRI slices. This research indicates that the integrated feature-based scheme helps to achieve a classification accuracy of 99.6667% when a support-vector-machine (SVM) classifier is considered. Further, the performance of this scheme is verified using noise-attacked MRI slices, and better classification results are achieved.
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Affiliation(s)
- Venkatesan Rajinikanth
- Department of Computer Science and Engineering, Division of Research and Innovation, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai 602105, India
| | - P M Durai Raj Vincent
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore 632014, India
| | - C N Gnanaprakasam
- Department of Electronics and Instrumentation Engineering, St. Joseph's College of Engineering, OMR, Chennai 600119, India
| | - Kathiravan Srinivasan
- School of Computer Science and Engineering, Vellore Institute of Technology, Vellore 632014, India
| | - Chuan-Yu Chang
- Department of Computer Science and Information Engineering, National Yunlin University of Science and Technology, Yunlin 64002, Taiwan
- Service Systems Technology Center, Industrial Technology Research Institute, Hsinchu 310401, Taiwan
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11
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Shi Y, Shen Z, Zeng W, Luo S, Zhou L, Wang N. A schizophrenia study based on multi-frequency dynamic functional connectivity analysis of fMRI. Front Hum Neurosci 2023; 17:1164685. [PMID: 37250690 PMCID: PMC10213427 DOI: 10.3389/fnhum.2023.1164685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/17/2023] [Indexed: 05/31/2023] Open
Abstract
At present, fMRI studies mainly focus on the entire low-frequency band (0. 01-0.08 Hz). However, the neuronal activity is dynamic, and different frequency bands may contain different information. Therefore, a novel multi-frequency-based dynamic functional connectivity (dFC) analysis method was proposed in this study, which was then applied to a schizophrenia study. First, three frequency bands (Conventional: 0.01-0.08 Hz, Slow-5: 0.0111-0.0302 Hz, and Slow-4: 0.0302-0.0820 Hz) were obtained using Fast Fourier Transform. Next, the fractional amplitude of low-frequency fluctuations was used to identify abnormal regions of interest (ROIs) of schizophrenia, and dFC among these abnormal ROIs was implemented by the sliding time window method at four window-widths. Finally, recursive feature elimination was employed to select features, and the support vector machine was applied for the classification of patients with schizophrenia and healthy controls. The experimental results showed that the proposed multi-frequency method (Combined: Slow-5 and Slow-4) had a better classification performance compared with the conventional method at shorter sliding window-widths. In conclusion, our results revealed that the dFCs among the abnormal ROIs varied at different frequency bands and the efficiency of combining multiple features from different frequency bands can improve classification performance. Therefore, it would be a promising approach for identifying brain alterations in schizophrenia.
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Affiliation(s)
- Yuhu Shi
- College of Information Engineering, Shanghai Maritime University, Shanghai, China
| | - Zehao Shen
- College of Information Engineering, Shanghai Maritime University, Shanghai, China
| | - Weiming Zeng
- College of Information Engineering, Shanghai Maritime University, Shanghai, China
| | - Sizhe Luo
- College of Information Engineering, Shanghai Maritime University, Shanghai, China
| | - Lili Zhou
- Surgery Department of Tongji University Affiliated Yangpu Central Hospital, Shanghai, China
| | - Nizhuan Wang
- School of Biomedical Engineering, ShanghaiTech University, Shanghai, China
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Association between the Systolic Blood Pressure Trajectory and Risk of Stroke in a Health-Management Population in Jiaozuo, China. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:7472188. [PMID: 36619241 PMCID: PMC9812623 DOI: 10.1155/2022/7472188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 12/02/2022] [Accepted: 12/05/2022] [Indexed: 12/31/2022]
Abstract
The trajectories of systolic blood pressure (SBP) in a screening population in Jiaozuo were examined, and the association between the different types of SBP trajectories and the risk of stroke was evaluated. Data of a fixed cohort population from the Jiaozuo Stroke Prevention and Control Project Management Special Database System that underwent community screening in 2015, 2017, 2019, and 2021 were collected. Ultimately, a total of 1,451 participants who met the inclusion criteria for this study were included in the analysis, which was performed using group trajectory modeling. The baseline SBP for each trajectory subgroup was characterized at follow-up. Kaplan-Meier analysis for each trajectory group was also performed, and the relationship between the SBP trajectory and risk of stroke onset during follow-up was validated using a Cox proportional hazards model. Based on the SBP from 2015 to 2021, this cohort population was divided into three groups based on the trajectory development patterns: the low-stable group (37.6%), the moderate-increasing group (53.4%), and the high-acutely increasing group (9%). Gender, age, body mass index, diastolic blood pressure, and fasting blood glucose level were predictive factors for the SBP trajectory group. The cumulative survival risk in the high-acutely increasing group was higher than that of the other two groups. After adjusting for potential confounding factors and using the low-stable group as a reference, the hazard ratios (95% confidence interval) for the risk of stroke onset in the moderate-increasing and high-acutely increasing groups were 1.38 (0.91-2.07) and 1.51 (0.82-2.76), respectively. The results of the analysis demonstrate that higher blood pressure trajectories are associated with a higher risk of stroke and that the risk of stroke can be reduced by better control and management of the SBP.
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Predicting graft failure in pediatric liver transplantation based on early biomarkers using machine learning models. Sci Rep 2022; 12:22411. [PMID: 36575218 PMCID: PMC9794703 DOI: 10.1038/s41598-022-25900-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 12/06/2022] [Indexed: 12/28/2022] Open
Abstract
The early detection of graft failure in pediatric liver transplantation is crucial for appropriate intervention. Graft failure is associated with numerous perioperative risk factors. This study aimed to develop an individualized predictive model for 90-days graft failure in pediatric liver transplantation using machine learning methods. We conducted a single-center retrospective cohort study. A total of 87 liver transplantation cases performed in patients aged < 12 years at the Severance Hospital between January 2010 and September 2020 were included as data samples. Preoperative conditions of recipients and donors, intraoperative care, postoperative serial laboratory parameters, and events observed within seven days of surgery were collected as features. A least absolute shrinkage and selection operator (LASSO) -based method was used for feature selection to overcome the high dimensionality and collinearity of variables. Among 146 features, four variables were selected as the resultant features, namely, preoperative hepatic encephalopathy, sodium level at the end of surgery, hepatic artery thrombosis, and total bilirubin level on postoperative day 7. These features were selected from different times and represent distinct clinical aspects. The model with logistic regression demonstrated the best prediction performance among various machine learning methods tested (area under the receiver operating characteristic curve (AUROC) = 0.898 and area under the precision-recall curve (AUPR) = 0.882). The risk scoring system developed based on the logistic regression model showed an AUROC of 0.910 and an AUPR of 0.830. Together, the prediction of graft failure in pediatric liver transplantation using the proposed machine learning model exhibited superior discrimination power and, therefore, can provide valuable information to clinicians for their decision making during the postoperative management of the patients.
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Effects of Data Augmentation with the BNNSMOTE Algorithm in Seizure Detection Using 1D-MobileNet. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:4114178. [PMID: 36578313 PMCID: PMC9792253 DOI: 10.1155/2022/4114178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 10/19/2022] [Accepted: 12/01/2022] [Indexed: 12/24/2022]
Abstract
Automatic seizure detection technology has important implications for reducing the workload of neurologists for epilepsy diagnosis and treatment. Due to the unpredictable nature of seizures, the imbalanced classification of seizure and nonseizure data continues to be challenging. In this work, we first propose a novel algorithm named the borderline nearest neighbor synthetic minority oversampling technique (BNNSMOTE) to address the imbalanced classification problem and improve seizure detection performance. The algorithm uses the nearest neighbor notion to generate nonseizure samples near the boundary, then determines the seizure samples that are difficult to learn at the boundary, and lastly selects seizure samples at random to be used in the synthesis of new samples. In view of the characteristic that electroencephalogram (EEG) signals are one-dimensional signals, we then develop a 1D-MobileNet model to validate the algorithm's performance. Results demonstrate that the proposed algorithm outperforms previous seizure detection methods on the CHB-MIT dataset, achieving an average accuracy of 99.40%, a recall value of 87.46%, a precision of 97.17%, and an F1-score of 91.90%, respectively. We also had considerable success when we used additional datasets for verification at the same time. Our algorithm's data augmentation effects are more pronounced and perform better at seizure detection than the existing imbalanced techniques. Besides, the model's parameters and calculation volume have been significantly reduced, making it more suitable for mobile terminals and embedded devices.
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Park JJ, Seok HG, Woo IH, Park CH. Racial differences in prevalence and anatomical distribution of tarsal coalition. Sci Rep 2022; 12:21567. [PMID: 36513745 PMCID: PMC9747905 DOI: 10.1038/s41598-022-26049-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2022] [Accepted: 12/08/2022] [Indexed: 12/14/2022] Open
Abstract
Previous studies have reported a prevalence of tarsal coalition of 0.03-13%. Calcaneonavicular coalition is known as main anatomical type, and the bilateral occurrence of tarsal coalition is known to be 50% or more. These are the results of studies on Caucasians, there have been few studies targeting large number of East Asians so far. We hypothesized that the prevalence and characteristics of tarsal coalition in East Asians might differ from those in Caucasians. The medical records of 839 patients who underwent bilateral computed tomography on foot and ankle in our hospital from January 2012 to April 2021 were retrospectively reviewed. The overall prevalence was 6.0%, talocalcaneal coalition was the most common anatomical type. The overall bilateral occurrence was 56.5%, talocalcaneal coalition had the highest bilateral occurrence (76.0%) among anatomical types. Isolated union of the posterior facet was the most common subtype of talocalcaneal coalition (43.2%). Talocalcaneal coalition had a significantly higher proportion of coalition-related symptomatic patients than calcaneonavicular coalition (p = 0.019). Our study showed a similar trend to other East Asian studies, confirming the existence of racial differences. The possibility of tarsal coalition in foot and ankle patients in East Asians should always be considered, and bilateral examination is essential for diagnosis.
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Affiliation(s)
- Jeong Jin Park
- grid.413040.20000 0004 0570 1914Department of Orthopaedic Surgery, Yeungnam University Hospital, Yeungnam University Medical Center, 170 Hyeonchung-ro, Nam-gu, Daegu, 42415 South Korea
| | - Hyun Gyu Seok
- grid.413040.20000 0004 0570 1914Department of Orthopaedic Surgery, Yeungnam University Hospital, Yeungnam University Medical Center, 170 Hyeonchung-ro, Nam-gu, Daegu, 42415 South Korea
| | - In Ha Woo
- grid.413040.20000 0004 0570 1914Department of Orthopaedic Surgery, Yeungnam University Hospital, Yeungnam University Medical Center, 170 Hyeonchung-ro, Nam-gu, Daegu, 42415 South Korea
| | - Chul Hyun Park
- grid.413040.20000 0004 0570 1914Department of Orthopaedic Surgery, Yeungnam University Medical Center, Yeungnam University College of Medicine, 170 Hyeonchung-ro, Nam-gu, Daegu, 42415 South Korea
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Association between Cardio-Ankle Vascular Index and Masked Uncontrolled Hypertension in Hypertensive Patients: A Cross-Sectional Study. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:3167518. [PMID: 36545481 PMCID: PMC9763005 DOI: 10.1155/2022/3167518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Revised: 11/13/2022] [Accepted: 11/26/2022] [Indexed: 12/15/2022]
Abstract
Detection of masked uncontrolled hypertension (MUCH) that was defined for treated hypertensive individuals who had normal office blood pressure (BP) but elevated ambulatory BP remains largely challenging. Arterial stiffness is one of the leading risk markers for hypertension and can be clinically assessed by the cardio-ankle vascular index (CAVI). This study aimed to evaluate the association between CAVI and MUCH. A total of 155 hypertensive patients were included with their office BP levels and ambulatory BP monitoring measurements, which were divided into controlled hypertension (CH), MUCH, and sustained uncontrolled hypertension (SUCH) groups, respectively. There were 48 patients with CH, 56 patients with MUCH, and 51 patients with SUCH. Both MUCH and SUCH groups had a significantly higher CAVI than the CH group (9.05 (8.20-9.91) vs. 8.33 (7.75-9.15), p = 0.017, and 9.75 (8.35-10.50) vs. 8.33 (7.75-9.15), p = 0.002, respectively). There was no significant difference in CAVI values between the MUCH and SUCH groups. Multinomial logistic regression analysis exhibited that compared with the CH group, increased CAVI levels were positively associated with the presence of MUCH and SUCH (OR 2.046, 95% CI (1.239-3.381), p = 0.005; OR 2.215, 95% CI (1.310-3.747), p = 0.003) after adjusting for confounders. However, there was a similar trend of the CAVI in the MUCH and SUCH groups (OR 0.924, 95% CI (0.629-1.356), p = 0.686). In summary, our findings support, for the first time, the novel notion that CAVI as an arterial stiffness parameter is an independent risk factor for MUCH, being equally important to MUCH and SUCH. When the assessed CAVI is high in hypertensive patients with normotensive office BP levels, it is necessary to further investigate with a 24 h ambulatory BP monitoring to estimate the longstanding BP control. CAVI may be used as a noninvasive indicator to identify patients with MUCH earlier.
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Skin lesion classification of dermoscopic images using machine learning and convolutional neural network. Sci Rep 2022; 12:18134. [PMID: 36307467 PMCID: PMC9616944 DOI: 10.1038/s41598-022-22644-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/18/2022] [Indexed: 12/30/2022] Open
Abstract
Detecting dangerous illnesses connected to the skin organ, particularly malignancy, requires the identification of pigmented skin lesions. Image detection techniques and computer classification capabilities can boost skin cancer detection accuracy. The dataset used for this research work is based on the HAM10000 dataset which consists of 10015 images. The proposed work has chosen a subset of the dataset and performed augmentation. A model with data augmentation tends to learn more distinguishing characteristics and features rather than a model without data augmentation. Involving data augmentation can improve the accuracy of the model. But that model cannot give significant results with the testing data until it is robust. The k-fold cross-validation technique makes the model robust which has been implemented in the proposed work. We have analyzed the classification accuracy of the Machine Learning algorithms and Convolutional Neural Network models. We have concluded that Convolutional Neural Network provides better accuracy compared to other machine learning algorithms implemented in the proposed work. In the proposed system, as the highest, we obtained an accuracy of 95.18% with the CNN model. The proposed work helps early identification of seven classes of skin disease and can be validated and treated appropriately by medical practitioners.
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Li J, Liu L. The Reform of University Education Teaching Based on Cloud Computing and Big Data Background. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:8169938. [PMID: 35990146 PMCID: PMC9391095 DOI: 10.1155/2022/8169938] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/07/2022] [Accepted: 07/15/2022] [Indexed: 11/17/2022]
Abstract
In the era of big data and cloud computing, traditional college teaching model needs to be revolutionized in order to adapt to the needs of the present generation. The traditional college teaching model is currently facing unprecedented severe challenges which could be optimistically considered as a huge scope of development opportunity. In order to promote the gradual transformation of college teaching toward digitization, intelligence, and modernization, this paper comprehensively analyzes the impact of science and technology on college teaching. It further encourages the omnidirectional and multifaceted amalgamation of education with big data and cloud computing technology with an objective to improve the overall teaching level of colleges and universities. In order to realize the accurate evaluation of university teaching reform and improve teaching quality, the study presents an evaluation method of university teaching reform based on in-depth research network. Then, it further analyzes the main contents of university teaching reform, establishes the evaluation department of university teaching reform, and then establishes the evaluation model of university education reform. This is achieved by analyzing the relationship between university education reform and indicators using in-depth learning network followed by the development of simulation experiments pertinent to evaluation of university education reform. The results show that this method is helpful in improving the teaching quality.
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Affiliation(s)
- Jing Li
- School of Management, Hubei University of Chinese Medicine, Wuhan, Hubei 430065, China
| | - Lei Liu
- Hubei University of Technology Engineering and Technology College, Wuhan, Hubei 430065, China
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