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Poletto B, Silva GG, Souza Ramos de Carvalho AC, Vincenzi RA, de Almeida EY, Galante D, Bendia AG, Rodrigues F. Ultraviolet Resistance of Microorganisms Isolated from Uranium-Rich Minerals from Perus, Brazil. ASTROBIOLOGY 2024. [PMID: 38853686 DOI: 10.1089/ast.2022.0125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
The district of Perus, located in the city of São Paulo, Brazil, is renowned for its weathered granitic-pegmatitic masses, which harbor a significant number of uraniferous minerals that contribute to ionizing radiation levels up to 20 times higher than the background levels. In this study, aseptically collected mineral samples from the area were utilized to isolate 15 microorganisms, which were subjected to pre-screening tests involving UV-C and UV-B radiation. The microorganisms that exhibited the highest resistance to ultraviolet (UV) radiation were selected for the construction of survival curves for UV-C, broad-band UV-B, and solar simulation resistance testing. Subsequently, the four strains that demonstrated superior survival capabilities under UV radiation exposure were chosen for 16S rRNA gene sequencing. Among these, Nocardioides sp. O4R and Nocardioides sp. MA2R demonstrated the most promising outcomes in the UV radiation resistance assessments, showcasing comparable performance to the well-established radioresistant model organism Deinococcus radiodurans. These findings underscore the potential of naturally occurring high-radiation environments as valuable resources for the investigation of UV-resistant microorganisms.
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Affiliation(s)
- Bárbara Poletto
- Chemistry Institute, Universidade de São Paulo, São Paulo, Brazil
- Interunities Postgraduate Program in Biotechnology, Universidade de São Paulo, São Paulo, Brazil
| | | | - Ana Carolina Souza Ramos de Carvalho
- Chemistry Institute, Universidade de São Paulo, São Paulo, Brazil
- Interunities Postgraduate Program in Biotechnology, Universidade de São Paulo, São Paulo, Brazil
| | | | - Eiji Yamassaki de Almeida
- Chemistry Institute, Universidade de São Paulo, São Paulo, Brazil
- Interunities Postgraduate Program in Biotechnology, Universidade de São Paulo, São Paulo, Brazil
| | - Douglas Galante
- Interunities Postgraduate Program in Biotechnology, Universidade de São Paulo, São Paulo, Brazil
- Brazilian Synchrotron Light Laboratory, Campinas, Brazil
| | | | - Fabio Rodrigues
- Chemistry Institute, Universidade de São Paulo, São Paulo, Brazil
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Effects of UV stress on Shewanella azerbaijanica bioremediation response. RADIOCHIM ACTA 2022. [DOI: 10.1515/ract-2022-0059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Abstract
Shewanella azerbaijanica roles as a live electrode, passing electrons from electron donors to electron acceptors, to gain energy from the extracellular electron transfer (EET) pathway. The present study, considered the quantitative expressions of the major EET reductase genes (mtr cluster), together with uranium removal, live-cell counting, and spectrophotometry in UV-C treated bacteria (0, 60, 120 and 180 s). The simultaneous decline in the uranium removal and cell counting, along with major mtr gene expression patterns (mtrABDEF), approved the negative effects of UV-C radiation on uranium bioreduction in S. azerbaijanica. Uranium removal and cell counting decreased to 25.49% and 0.45 × 109 cells/mL in the 180s UV-C treated sample, respectively at 2 mM uranium concentration, while no decline trend found in 0.5 mM for the counted cells and uranium removal tests. No considerable expression of omcA and omcB (mtrC) genes were traced due to spontaneous mutagenesis during the in vitro serial passages, proposing a novel alternative EET pathway in S. azerbaijanica during uranium bioreduction process. The results could pave the way for further researches to modify the bioremediation process through genetic manipulation.
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Farci D, Graça AT, Iesu L, de Sanctis D, Piano D. The SDBC is active in quenching oxidative conditions and bridges the cell envelope layers in Deinococcus radiodurans. J Biol Chem 2022; 299:102784. [PMID: 36502921 PMCID: PMC9823218 DOI: 10.1016/j.jbc.2022.102784] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Revised: 11/30/2022] [Accepted: 12/04/2022] [Indexed: 12/14/2022] Open
Abstract
Deinococcus radiodurans is known for its remarkable ability to withstand harsh stressful conditions. The outermost layer of its cell envelope is a proteinaceous coat, the S-layer, essential for resistance to and interactions with the environment. The S-layer Deinoxanthin-binding complex (SDBC), one of the main units of the characteristic multilayered cell envelope of this bacterium, protects against environmental stressors and allows exchanges with the environment. So far, specific regions of this complex, the collar and the stalk, remained unassigned. Here, these regions are resolved by cryo-EM and locally refined. The resulting 3D map shows that the collar region of this multiprotein complex is a trimer of the protein DR_0644, a Cu-only superoxide dismutase (SOD) identified here to be efficient in quenching reactive oxygen species. The same data also showed that the stalk region consists of a coiled coil that extends into the cell envelope for ∼280 Å, reaching the inner membrane. Finally, the orientation and localization of the complex are defined by in situ cryo-electron crystallography. The structural organization of the SDBC couples fundamental UV antenna properties with the presence of a Cu-only SOD, showing here coexisting photoprotective and chemoprotective functions. These features suggests how the SDBC and similar protein complexes, might have played a primary role as evolutive templates for the origin of photoautotrophic processes by combining primary protective needs with more independent energetic strategies.
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Affiliation(s)
- Domenica Farci
- Department of Plant Physiology, Warsaw University of Life Sciences - SGGW, Warsaw, Poland,Department of Chemistry, Umeå University, Umeå, Sweden,Department of Life and Environmental Sciences, Laboratory of Plant Physiology and Photobiology, University of Cagliari, Cagliari, Italy,For correspondence: Dario Piano; Domenica Farci
| | | | - Luca Iesu
- Department of Life and Environmental Sciences, Laboratory of Plant Physiology and Photobiology, University of Cagliari, Cagliari, Italy
| | - Daniele de Sanctis
- Structural Biology group, ESRF, The European Synchrotron Radiation Facility, Grenoble, France
| | - Dario Piano
- Department of Plant Physiology, Warsaw University of Life Sciences - SGGW, Warsaw, Poland,Department of Life and Environmental Sciences, Laboratory of Plant Physiology and Photobiology, University of Cagliari, Cagliari, Italy,For correspondence: Dario Piano; Domenica Farci
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Farci D, Haniewicz P, de Sanctis D, Iesu L, Kereïche S, Winterhalter M, Piano D. The cryo-EM structure of the S-layer deinoxanthin-binding complex of Deinococcus radiodurans informs properties of its environmental interactions. J Biol Chem 2022; 298:102031. [PMID: 35577074 PMCID: PMC9189128 DOI: 10.1016/j.jbc.2022.102031] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 05/10/2022] [Accepted: 05/11/2022] [Indexed: 12/22/2022] Open
Abstract
The radiation-resistant bacterium Deinococcus radiodurans is known as the world’s toughest bacterium. The S-layer of D. radiodurans, consisting of several proteins on the surface of the cellular envelope and intimately associated with the outer membrane, has therefore been useful as a model for structural and functional studies. Its main proteinaceous unit, the S-layer deinoxanthin-binding complex (SDBC), is a hetero-oligomeric assembly known to contribute to the resistance against environmental stress and have porin functional features; however, its precise structure is unknown. Here, we resolved the structure of the SDBC at ∼2.5 Å resolution by cryo-EM and assigned the sequence of its main subunit, the protein DR_2577. This structure is characterized by a pore region, a massive β-barrel organization, a stalk region consisting of a trimeric coiled coil, and a collar region at the base of the stalk. We show that each monomer binds three Cu ions and one Fe ion and retains one deinoxanthin molecule and two phosphoglycolipids, all exclusive to D. radiodurans. Finally, electrophysiological characterization of the SDBC shows that it exhibits transport properties with several amino acids. Taken together, these results highlight the SDBC as a robust structure displaying both protection and sieving functions that facilitates exchanges with the environment.
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Affiliation(s)
- Domenica Farci
- Department of Plant Physiology, Warsaw University of Life Sciences - SGGW, Warsaw, 02-776, Poland; Department of Chemistry, Umeå University, Linnaeus väg 6, Umeå, 90736, Sweden.
| | - Patrycja Haniewicz
- Department of Plant Physiology, Warsaw University of Life Sciences - SGGW, Warsaw, 02-776, Poland
| | - Daniele de Sanctis
- ESRF, The European Synchrotron Radiation Facility, Grenoble, 38043, France
| | - Luca Iesu
- Laboratory of Plant Physiology and Photobiology, Department of Life and Environmental Sciences, University of Cagliari, Cagliari, 09123, Italy
| | - Sami Kereïche
- Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Prague, 12800, Czech Republic
| | - Mathias Winterhalter
- Department of Life Sciences & Chemistry, Jacobs University Bremen, Bremen, 28759, Germany
| | - Dario Piano
- Department of Plant Physiology, Warsaw University of Life Sciences - SGGW, Warsaw, 02-776, Poland; Laboratory of Plant Physiology and Photobiology, Department of Life and Environmental Sciences, University of Cagliari, Cagliari, 09123, Italy.
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Li C, Yuan W, Gou Y, Zhang K, Zhang Q, Zhou JJ, Liu C. The Impact of Ultraviolet-B Radiation on the Sugar Contents and Protective Enzymes in Acyrthosiphon pisum. INSECTS 2021; 12:1053. [PMID: 34940141 PMCID: PMC8708437 DOI: 10.3390/insects12121053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 11/20/2021] [Accepted: 11/23/2021] [Indexed: 11/17/2022]
Abstract
Natural and anthropogenic changes have been altering many environmental factors. These include the amount of solar radiation reaching the Earth's surface. However, the effects of solar radiation on insect physiology have received little attention. As a pest for agriculture and horticulture, aphids are one of the most difficult pest groups to control due to their small size, high fecundity, and non-sexual reproduction. Study of the effects of UV-B radiation on aphid physiology may provide alternative control strategies in pest management. In this study, we examined the effects of UV-B radiation on protein and sugar contents, as well as the activities of protective enzymes, of the red and green morphs of the pea aphid over eight generations. The results indicated a significant interaction between UV-B radiation and aphid generations. Exposure of the pea aphids to UV-B radiation caused a significant decrease in the protein content and a significant increase in the glycogen and trehalose contents at each generation as measured in whole aphid bioassays. The enzyme activity of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) of the pea aphids changed significantly at each generation with UV-B treatments. The SOD activity increased over eight generations to the highest level at G7 generation. However, the enzyme activity of CAT first increased and then decreased with UV-B treatments, and POD mostly gradually decreased over the eight generations. Therefore, UV-B radiation is an environmental factor that could result in physiological changes of the pea aphid. Moreover, our study discovered that red and green aphids did not display a significant consistent difference in the response to the UV-B treatments. These results may prove useful in future studies especially for assessing their significance in the adaptation and management against UV-B radiation.
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Affiliation(s)
- Chunchun Li
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
| | - Weining Yuan
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
| | - Yuping Gou
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
| | - Kexin Zhang
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
| | - Qiangyan Zhang
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
| | - Jing-Jiang Zhou
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
- State Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Changzhong Liu
- Biocontrol Engineering Laboratory of Crop Diseases and Pests of Gansu Province, College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China; (C.L.); (W.Y.); (Y.G.); (K.Z.); (Q.Z.); (J.-J.Z.)
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