Unifying Blind Separation and Clustering for Resting-State EEG/MEG Functional Connectivity Analysis

Multi-context blind source separation by error-gated Hebbian rule

Animals need to adjust their inferences according to the context they are in. This is required for the multi-context blind source separation (BSS) task, where an agent needs to infer hidden sources from their context-dependent mixtures. The agent is expected to invert this mixing process for all contexts. Here, we show that a neural network that implements the error-gated Hebbian rule (EGHR) with sufficiently redundant sensory inputs can successfully learn this task. After training, the network can perform the multi-context BSS without further updating synapses, by retaining memories of all experienced contexts. This demonstrates an attractive use of the EGHR for dimensionality reduction by extracting low-dimensional sources across contexts. Finally, if there is a common feature shared across contexts, the EGHR can extract it and generalize the task to even inexperienced contexts. The results highlight the utility of the EGHR as a model for perceptual adaptation in animals.

Unsupervised identification of states from voltage recordings of neural networks

BACKGROUND

Modern techniques for multi-neuronal recording produce large amounts of data. There is no automatic procedure for the identification of states in recurrent voltage patterns.

NEW METHOD

We propose NetSAP (Network States And Pathways), a data-driven analysis method that is able to recognize multi-neuron voltage patterns (states). To capture the subtle differences between snapshots in voltage recordings, NetSAP infers the underlying functional neural network in a time-resolved manner with a sliding window approach. Then NetSAP identifies states from a reordering of the time series of inferred networks according to a user-defined metric. The procedure for unsupervised identification of states was developed originally for the analysis of molecular dynamics simulations of proteins.

RESULTS

We tested NetSAP on neural network simulations of GABAergic inhibitory interneurons. Most simulation parameters are chosen to reproduce literature observations, and we keep noise terms as control parameters to regulate the coherence of the simulated signals. NetSAP is able to identify multiple states even in the case of high internal noise and low signal coherence. We provide evidence that NetSAP is robust for networks with up to about 50% of the neurons spiking randomly. NetSAP is scalable and its code is open source.

COMPARISON WITH EXISTING METHODS

NetSAP outperforms common analysis techniques, such as PCA and k-means clustering, on a simulated recording of voltage traces of 50 neurons.

CONCLUSIONS

NetSAP analysis is an efficient tool to identify voltage patterns from neuronal recordings.

Markov Model-Based Method to Analyse Time-Varying Networks in EEG Task-Related Data

The dynamic nature of functional brain networks is being increasingly recognized in cognitive neuroscience, and methods to analyse such time-varying networks in EEG/MEG data are required. In this work, we propose a pipeline to characterize time-varying networks in single-subject EEG task-related data and further, evaluate its validity on both simulated and experimental datasets. Pre-processing is done to remove channel-wise and trial-wise differences in activity. Functional networks are estimated from short non-overlapping time windows within each “trial,” using a sparse-MVAR (Multi-Variate Auto-Regressive) model. Functional “states” are then identified by partitioning the entire space of functional networks into a small number of groups/symbols via k-means clustering.The multi-trial sequence of symbols is then described by a Markov Model (MM). We show validity of this pipeline on realistic electrode-level simulated EEG data, by demonstrating its ability to discriminate “trials” from two experimental conditions in a range of scenarios. We then apply it to experimental data from two individuals using a Brain-Computer Interface (BCI) via a P300 oddball task. Using just the Markov Model parameters, we obtain statistically significant discrimination between target and non-target trials. The functional networks characterizing each ‘state’ were also highly similar between the two individuals. This work marks the first application of the Markov Model framework to infer time-varying networks from EEG/MEG data. Due to the pre-processing, results from the pipeline are orthogonal to those from conventional ERP averaging or a typical EEG microstate analysis. The results provide powerful proof-of-concept for a Markov model-based approach to analyzing the data, paving the way for its use to track rapid changes in interaction patterns as a task is being performed. MATLAB code for the entire pipeline has been made available.