A Continuous Attractor Model with Realistic Neural and Synaptic Properties Quantitatively Reproduces Grid Cell Physiology

Computational simulations with data-driven physiological detail can foster a deeper understanding of the neural mechanisms involved in cognition. Here, we utilize the wealth of cellular properties from Hippocampome.org to study neural mechanisms of spatial coding with a spiking continuous attractor network model of medial entorhinal cortex circuit activity. The primary goal is to investigate if adding such realistic constraints could produce firing patterns similar to those measured in real neurons. Biological characteristics included in the work are excitability, connectivity, and synaptic signaling of neuron types defined primarily by their axonal and dendritic morphologies. We investigate the spiking dynamics in specific neuron types and the synaptic activities between groups of neurons. Modeling the rodent hippocampal formation keeps the simulations to a computationally reasonable scale while also anchoring the parameters and results to experimental measurements. Our model generates grid cell activity that well matches the spacing, size, and firing rates of grid fields recorded in live behaving animals from both published datasets and new experiments performed for this study. Our simulations also recreate different scales of those properties, e.g., small and large, as found along the dorsoventral axis of the medial entorhinal cortex. Computational exploration of neuronal and synaptic model parameters reveals that a broad range of neural properties produce grid fields in the simulation. These results demonstrate that the continuous attractor network model of grid cells is compatible with a spiking neural network implementation sourcing data-driven biophysical and anatomical parameters from Hippocampome.org. The software (version 1.0) is released as open source to enable broad community reuse and encourage novel applications.

A Continuous Attractor Model with Realistic Neural and Synaptic Properties Quantitatively Reproduces Grid Cell Physiology

Computational simulations with data-driven physiological detail can foster a deeper understanding of the neural mechanisms involved in cognition. Here, we utilize the wealth of cellular properties from Hippocampome.org to study neural mechanisms of spatial coding with a spiking continuous attractor network model of medial entorhinal cortex circuit activity. The primary goal was to investigate if adding such realistic constraints could produce firing patterns similar to those measured in real neurons. Biological characteristics included in the work are excitability, connectivity, and synaptic signaling of neuron types defined primarily by their axonal and dendritic morphologies. We investigate the spiking dynamics in specific neuron types and the synaptic activities between groups of neurons. Modeling the rodent hippocampal formation keeps the simulations to a computationally reasonable scale while also anchoring the parameters and results to experimental measurements. Our model generates grid cell activity that well matches the spacing, size, and firing rates of grid fields recorded in live behaving animals from both published datasets and new experiments performed for this study. Our simulations also recreate different scales of those properties, e.g., small and large, as found along the dorsoventral axis of the medial entorhinal cortex. Computational exploration of neuronal and synaptic model parameters reveals that a broad range of neural properties produce grid fields in the simulation. These results demonstrate that the continuous attractor network model of grid cells is compatible with a spiking neural network implementation sourcing data-driven biophysical and anatomical parameters from Hippocampome.org. The software is released as open source to enable broad community reuse and encourage novel applications.

Grid cells, border cells, and discrete complex analysis

We propose a mechanism enabling the appearance of border cells-neurons firing at the boundaries of the navigated enclosures. The approach is based on the recent discovery of discrete complex analysis on a triangular lattice, which allows constructing discrete epitomes of complex-analytic functions and making use of their inherent ability to attain maximal values at the boundaries of generic lattice domains. As it turns out, certain elements of the discrete-complex framework readily appear in the oscillatory models of grid cells. We demonstrate that these models can extend further, producing cells that increase their activity toward the frontiers of the navigated environments. We also construct a network model of neurons with border-bound firing that conforms with the oscillatory models.

Grid Cells, Border Cells and Discrete Complex Analysis

We propose a mechanism enabling the appearance of border cells-neurons firing at the boundaries of the navigated enclosures. The approach is based on the recent discovery of discrete complex analysis on a triangular lattice, which allows constructing discrete epitomes of complex-analytic functions and making use of their inherent ability to attain maximal values at the boundaries of generic lattice domains. As it turns out, certain elements of the discrete-complex framework readily appear in the oscillatory models of grid cells. We demonstrate that these models can extend further, producing cells that increase their activity towards the frontiers of the navigated environments. We also construct a network model of neurons with border-bound firing that conforms with the oscillatory models.

Has the hippocampus really forgotten about space?

Several lines of evidence, including the discovery of place cells, have contributed to the notion that the hippocampus serves primarily to navigate the environment, as a repository of spatial memories, like a drawer full of charts; and that in some species it has exapted on this original one an episodic memory function. We argue that recent evidence questions the primacy of space, and points at memory load, whether spatial or not, as the challenge that mammalian hippocampal circuitry has evolved to meet.

Continuous attractors for dynamic memories

Episodic memory has a dynamic nature: when we recall past episodes, we retrieve not only their content, but also their temporal structure. The phenomenon of replay, in the hippocampus of mammals, offers a remarkable example of this temporal dynamics. However, most quantitative models of memory treat memories as static configurations, neglecting the temporal unfolding of the retrieval process. Here, we introduce a continuous attractor network model with a memory-dependent asymmetric component in the synaptic connectivity, which spontaneously breaks the equilibrium of the memory configurations and produces dynamic retrieval. The detailed analysis of the model with analytical calculations and numerical simulations shows that it can robustly retrieve multiple dynamical memories, and that this feature is largely independent of the details of its implementation. By calculating the storage capacity, we show that the dynamic component does not impair memory capacity, and can even enhance it in certain regimes.

When we recall a past experience, accessing what is known as an ‘episodic memory’, it usually does not appear as a still image or a snapshot of what occurred. Instead, our memories tend to be dynamic: we remember how a sequence of events unfolded, and when we do this, we often re-experience at least part of that same sequence. If the memory includes physical movement, the sequence combines space and time to remember a trajectory. For example, a mouse might remember how it went down a hole and found cheese there.

However, mathematical models of how past experiences are stored in our brains and retrieved when we remember them have so far focused on snapshot memories. ‘Attractor network models’ are one type of mathematical model that neuroscientists use to represent how neurons communicate with each other to store memories. These models can provide insights into how circuits of neurons, for example those in the hippocampus (a part of the brain crucial for memory), may have evolved to remember the past, but so far they have only focused on how single moments, rather than sequences of events, are represented by populations of neurons.

Spalla et al. found a way to extend these models, so they could analyse how networks of neurons can store and retrieve dynamic memories. These memories are represented in the brain as ‘continuous attractors’, which can be thought of as arrows that attract mental trajectories first to the arrow itself, and once on the arrow, to the arrowhead. Each recalled event elicits the next one on the arrow, as the mental trajectory advances towards the arrowhead. Spalla et al. determined that memory networks in the hippocampus of mammals can store large numbers of these ‘arrows’, up to the same amount of ‘snapshot’ memories predicted to be stored with similar models.

Spalla et al.’s results may allow researchers to better understand memory storage and recall, since they allow for the modelling of complex and realistic aspects of episodic memories. This could provide insights into processes such as why our minds wander, as well as having implications for the study of how neurons physically interact with each other to transmit information.

Dynamic and reversible remapping of network representations in an unchanging environment

Neurons in the medial entorhinal cortex alter their firing properties in response to environmental changes. This flexibility in neural coding is hypothesized to support navigation and memory by dividing sensory experience into unique episodes. However, it is unknown how the entorhinal circuit as a whole transitions between different representations when sensory information is not delineated into discrete contexts. Here we describe rapid and reversible transitions between multiple spatial maps of an unchanging task and environment. These remapping events were synchronized across hundreds of neurons, differentially affected navigational cell types, and correlated with changes in running speed. Despite widespread changes in spatial coding, remapping comprised a translation along a single dimension in population-level activity space, enabling simple decoding strategies. These findings provoke reconsideration of how the medial entorhinal cortex dynamically represents space and suggest a remarkable capacity of cortical circuits to rapidly and substantially reorganize their neural representations.

Processing of Different Temporal Scales in the Human Brain

While recalling life events, we reexperience events of different durations, ranging across varying temporal scales, from several minutes to years. However, the brain mechanisms underlying temporal cognition are usually investigated only in small-scale periods—milliseconds to minutes. Are the same neurocognitive systems used to organize memory at different temporal scales? Here, we asked participants to compare temporal distances (time elapsed) to personal events at four different temporal scales (hour, day, week, and month) under fMRI. Cortical activity showed temporal scale sensitivity at the medial and lateral parts of the parietal lobe, bilaterally. Activity at the medial parietal cortex also showed a gradual progression from large- to small-scale processing, along a posterior–anterior axis. Interestingly, no sensitivity was found along the hippocampal long axis. In the medial scale-sensitive region, most of the voxels were preferentially active for the larger scale (month), and in the lateral region, scale selectivity was higher for the smallest scale (hour). These results demonstrate how scale-selective activity characterizes autobiographical memory processing and may provide a basis for understanding how the human brain processes and integrates experiences across timescales in a hierarchical manner.