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Zhu H, Lei L. A dependency-based machine learning approach to the identification of research topics: a case in COVID-19 studies. LIBRARY HI TECH 2021. [DOI: 10.1108/lht-01-2021-0051] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
PurposePrevious research concerning automatic extraction of research topics mostly used rule-based or topic modeling methods, which were challenged due to the limited rules, the interpretability issue and the heavy dependence on human judgment. This study aims to address these issues with the proposal of a new method that integrates machine learning models with linguistic features for the identification of research topics.Design/methodology/approachFirst, dependency relations were used to extract noun phrases from research article texts. Second, the extracted noun phrases were classified into topics and non-topics via machine learning models and linguistic and bibliometric features. Lastly, a trend analysis was performed to identify hot research topics, i.e. topics with increasing popularity.FindingsThe new method was experimented on a large dataset of COVID-19 research articles and achieved satisfactory results in terms of f-measures, accuracy and AUC values. Hot topics of COVID-19 research were also detected based on the classification results.Originality/valueThis study demonstrates that information retrieval methods can help researchers gain a better understanding of the latest trends in both COVID-19 and other research areas. The findings are significant to both researchers and policymakers.
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Oliveira Chaves L, Gomes Domingos AL, Louzada Fernandes D, Ribeiro Cerqueira F, Siqueira-Batista R, Bressan J. Applicability of machine learning techniques in food intake assessment: A systematic review. Crit Rev Food Sci Nutr 2021; 63:902-919. [PMID: 34323627 DOI: 10.1080/10408398.2021.1956425] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
The evaluation of food intake is important in scientific research and clinical practice to understand the relationship between diet and health conditions of an individual or a population. Large volumes of data are generated daily in the health sector. In this sense, Artificial Intelligence (AI) tools have been increasingly used, for example, the application of Machine Learning (ML) algorithms to extract useful information, find patterns, and predict diseases. This systematic review aimed to identify studies that used ML algorithms to assess food intake in different populations. A literature search was conducted using five electronic databases, and 36 studies met all criteria and were included. According to the results, there has been a growing interest in the use of ML algorithms in the area of nutrition in recent years. Also, supervised learning algorithms were the most used, and the most widely used method of nutritional assessment was the food frequency questionnaire. We observed a trend in using the data analysis programs, such as R and WEKA. The use of ML in nutrition is recent and challenging. Therefore, it is encouraged that more studies are carried out relating these themes for the development of food reeducation programs and public policies.
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Affiliation(s)
| | | | | | | | - Rodrigo Siqueira-Batista
- Department of Medicine and Nursing, Universidade Federal de Viçosa, Viçosa, Brazil.,School of Medicine of the Faculdade Dinâmica do Vale do Piranga, Ponte Nova, Brazil
| | - Josefina Bressan
- Department of Nutrition and Health, Universidade Federal de Viçosa, Viçosa, Brazil
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Cecula P, Yu J, Dawoodbhoy FM, Delaney J, Tan J, Peacock I, Cox B. Applications of artificial intelligence to improve patient flow on mental health inpatient units - Narrative literature review. Heliyon 2021; 7:e06626. [PMID: 33898804 PMCID: PMC8060579 DOI: 10.1016/j.heliyon.2021.e06626] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 02/20/2021] [Accepted: 03/24/2021] [Indexed: 12/23/2022] Open
Abstract
BACKGROUND Despite a growing body of research into both Artificial intelligence and mental health inpatient flow issues, few studies adequately combine the two. This review summarises findings in the fields of AI in psychiatry and patient flow from the past 5 years, finds links and identifies gaps for future research. METHODS The OVID database was used to access Embase and Medline. Top journals such as JAMA, Nature and The Lancet were screened for other relevant studies. Selection bias was limited by strict inclusion and exclusion criteria. RESEARCH 3,675 papers were identified in March 2020, of which a limited number focused on AI for mental health unit patient flow. After initial screening, 323 were selected and 83 were subsequently analysed. The literature review revealed a wide range of applications with three main themes: diagnosis (33%), prognosis (39%) and treatment (28%). The main themes that emerged from AI in patient flow studies were: readmissions (41%), resource allocation (44%) and limitations (91%). The review extrapolates those solutions and suggests how they could potentially improve patient flow on mental health units, along with challenges and limitations they could face. CONCLUSION Research widely addresses potential uses of AI in mental health, with some focused on its applicability in psychiatric inpatients units, however research rarely discusses improvements in patient flow. Studies investigated various uses of AI to improve patient flow across specialities. This review highlights a gap in research and the unique research opportunity it presents.
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Affiliation(s)
- Paulina Cecula
- Imperial College London Business School, London, UK
- Imperial College School of Medicine, South Kensington Campus, London, SW7 2BU, UK
| | - Jiakun Yu
- Imperial College London Business School, London, UK
- Imperial College School of Medicine, South Kensington Campus, London, SW7 2BU, UK
| | - Fatema Mustansir Dawoodbhoy
- Imperial College London Business School, London, UK
- Imperial College School of Medicine, South Kensington Campus, London, SW7 2BU, UK
| | - Jack Delaney
- Imperial College London Business School, London, UK
- Imperial College School of Medicine, South Kensington Campus, London, SW7 2BU, UK
| | - Joseph Tan
- Imperial College London Business School, London, UK
- Brighton and Sussex Medical School, Brighton, East Sussex, BN1 9PX, UK
| | - Iain Peacock
- Imperial College London Business School, London, UK
- Brighton and Sussex Medical School, Brighton, East Sussex, BN1 9PX, UK
| | - Benita Cox
- Imperial College London Business School, London, UK
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Abstract
BACKGROUND This paper aims to synthesise the literature on machine learning (ML) and big data applications for mental health, highlighting current research and applications in practice. METHODS We employed a scoping review methodology to rapidly map the field of ML in mental health. Eight health and information technology research databases were searched for papers covering this domain. Articles were assessed by two reviewers, and data were extracted on the article's mental health application, ML technique, data type, and study results. Articles were then synthesised via narrative review. RESULTS Three hundred papers focusing on the application of ML to mental health were identified. Four main application domains emerged in the literature, including: (i) detection and diagnosis; (ii) prognosis, treatment and support; (iii) public health, and; (iv) research and clinical administration. The most common mental health conditions addressed included depression, schizophrenia, and Alzheimer's disease. ML techniques used included support vector machines, decision trees, neural networks, latent Dirichlet allocation, and clustering. CONCLUSIONS Overall, the application of ML to mental health has demonstrated a range of benefits across the areas of diagnosis, treatment and support, research, and clinical administration. With the majority of studies identified focusing on the detection and diagnosis of mental health conditions, it is evident that there is significant room for the application of ML to other areas of psychology and mental health. The challenges of using ML techniques are discussed, as well as opportunities to improve and advance the field.
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Affiliation(s)
- Adrian B R Shatte
- Federation University, School of Science, Engineering & Information Technology,Melbourne,Australia
| | - Delyse M Hutchinson
- Deakin University, Centre for Social and Early Emotional Development, School of Psychology, Faculty of Health,Geelong,Australia
| | - Samantha J Teague
- Deakin University, Centre for Social and Early Emotional Development, School of Psychology, Faculty of Health,Geelong,Australia
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Dipnall JF, Pasco JA, Berk M, Williams LJ, Dodd S, Jacka FN, Meyer D. Response to 'Pitfalls of big data'. Aust N Z J Psychiatry 2018; 52:604-605. [PMID: 29589468 DOI: 10.1177/0004867418765364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Joanna F Dipnall
- 1 IMPACT Strategic Research Centre, School of Medicine, Deakin University, Geelong, VIC, Australia.,2 Department of Statistics, Data Science and Epidemiology, Swinburne University of Technology, Hawthorn, VIC, Australia
| | - Julie A Pasco
- 1 IMPACT Strategic Research Centre, School of Medicine, Deakin University, Geelong, VIC, Australia.,3 Western Clinical School, The University of Melbourne, St Albans, VIC, Australia.,4 Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, VIC, Australia.,5 University Hospital Geelong, Barwon Health, Geelong, VIC, Australia
| | - Michael Berk
- 1 IMPACT Strategic Research Centre, School of Medicine, Deakin University, Geelong, VIC, Australia.,5 University Hospital Geelong, Barwon Health, Geelong, VIC, Australia.,6 Department of Psychiatry, The University of Melbourne, Parkville, VIC, Australia.,7 Florey Institute of Neuroscience and Mental Health, Parkville, VIC, Australia.,8 Orygen, the National Centre of Excellence in Youth Mental Health, Parkville, VIC, Australia
| | - Lana J Williams
- 1 IMPACT Strategic Research Centre, School of Medicine, Deakin University, Geelong, VIC, Australia.,5 University Hospital Geelong, Barwon Health, Geelong, VIC, Australia
| | - Seetal Dodd
- 1 IMPACT Strategic Research Centre, School of Medicine, Deakin University, Geelong, VIC, Australia.,5 University Hospital Geelong, Barwon Health, Geelong, VIC, Australia.,6 Department of Psychiatry, The University of Melbourne, Parkville, VIC, Australia.,8 Orygen, the National Centre of Excellence in Youth Mental Health, Parkville, VIC, Australia
| | - Felice N Jacka
- 1 IMPACT Strategic Research Centre, School of Medicine, Deakin University, Geelong, VIC, Australia.,6 Department of Psychiatry, The University of Melbourne, Parkville, VIC, Australia.,9 Centre for Adolescent Health, Murdoch Children's Research Institute, Melbourne, VIC, Australia.,10 Black Dog Institute, Sydney, NSW, Australia
| | - Denny Meyer
- 2 Department of Statistics, Data Science and Epidemiology, Swinburne University of Technology, Hawthorn, VIC, Australia
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6
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Affiliation(s)
- Nick S Glozier
- Brain and Mind Centre and Central Clinical School, Sydney Medical School, University of Sydney, Camperdown, NSW, Australia
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Salagre E, Dodd S, Aedo A, Rosa A, Amoretti S, Pinzon J, Reinares M, Berk M, Kapczinski FP, Vieta E, Grande I. Toward Precision Psychiatry in Bipolar Disorder: Staging 2.0. Front Psychiatry 2018; 9:641. [PMID: 30555363 PMCID: PMC6282906 DOI: 10.3389/fpsyt.2018.00641] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 11/13/2018] [Indexed: 12/23/2022] Open
Abstract
Personalized treatment is defined as choosing the "right treatment for the right person at the right time." Although psychiatry has not yet reached this level of precision, we are on the way thanks to recent technological developments that may aid to detect plausible molecular and genetic markers. At the moment there are some models that are contributing to precision psychiatry through the concept of staging. While staging was initially presented as a way to categorize patients according to clinical presentation, course, and illness severity, current staging models integrate multiple levels of information that can help to define each patient's characteristics, severity, and prognosis in a more precise and individualized way. Moreover, staging might serve as the foundation to create a clinical decision-making algorithm on the basis of the patient's stage. In this review we will summarize the evolution of the bipolar disorder staging model in relation to the new discoveries on the neurobiology of bipolar disorder. Furthermore, we will discuss how the latest and future progress in psychiatry might transform current staging models into precision staging models.
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Affiliation(s)
- Estela Salagre
- Barcelona Bipolar Disorders Program, Hospital Clinic, Institute of Neurosciences, University of Barcelona, IDIBAPS, CIBERSAM, Barcelona, Spain
| | - Seetal Dodd
- IMPACT Strategic Research Centre, Barwon Health, Deakin University, Geelong, VIC, Australia.,Department of Psychiatry, University of Melbourne, Parkville, VIC, Australia.,Orygen, The National Centre of Excellence in Youth Mental Health, Melbourne, VIC, Australia
| | - Alberto Aedo
- Barcelona Bipolar Disorders Program, Hospital Clinic, Institute of Neurosciences, University of Barcelona, IDIBAPS, CIBERSAM, Barcelona, Spain.,Bipolar Disorders Unit, Department of Psychiatry, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Adriane Rosa
- Laboratory of Molecular Psychiatry, Hospital de Clínicas de Porto Alegre, Porto Alegre, Brazil.,Postgraduate Program: Psychiatry and Behavioral Science, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil.,Department of Pharmacology and Postgraduate Program: Pharmacology and Therapeutics, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Silvia Amoretti
- Barcelona Clínic Schizophrenia Unit, Hospital Clinic de Barcelona, CIBERSAM, Barcelona, Spain
| | - Justo Pinzon
- Barcelona Bipolar Disorders Program, Hospital Clinic, Institute of Neurosciences, University of Barcelona, IDIBAPS, CIBERSAM, Barcelona, Spain
| | - Maria Reinares
- Barcelona Bipolar Disorders Program, Hospital Clinic, Institute of Neurosciences, University of Barcelona, IDIBAPS, CIBERSAM, Barcelona, Spain
| | - Michael Berk
- IMPACT Strategic Research Centre, Barwon Health, Deakin University, Geelong, VIC, Australia.,Department of Psychiatry, University of Melbourne, Parkville, VIC, Australia.,Orygen, The National Centre of Excellence in Youth Mental Health, Melbourne, VIC, Australia.,Florey Institute for Neuroscience and Mental Health, Parkville, VIC, Australia
| | | | - Eduard Vieta
- Barcelona Bipolar Disorders Program, Hospital Clinic, Institute of Neurosciences, University of Barcelona, IDIBAPS, CIBERSAM, Barcelona, Spain
| | - Iria Grande
- Barcelona Bipolar Disorders Program, Hospital Clinic, Institute of Neurosciences, University of Barcelona, IDIBAPS, CIBERSAM, Barcelona, Spain
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