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Santos da Silva G, Casanova D, Oliva JT, Rodrigues EO. Cardiac fat segmentation using computed tomography and an image-to-image conditional generative adversarial neural network. Med Eng Phys 2024; 124:104104. [PMID: 38418017 DOI: 10.1016/j.medengphy.2024.104104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 08/17/2023] [Accepted: 01/09/2024] [Indexed: 03/01/2024]
Abstract
In recent years, research has highlighted the association between increased adipose tissue surrounding the human heart and elevated susceptibility to cardiovascular diseases such as atrial fibrillation and coronary heart disease. However, the manual segmentation of these fat deposits has not been widely implemented in clinical practice due to the substantial workload it entails for medical professionals and the associated costs. Consequently, the demand for more precise and time-efficient quantitative analysis has driven the emergence of novel computational methods for fat segmentation. This study presents a novel deep learning-based methodology that offers autonomous segmentation and quantification of two distinct types of cardiac fat deposits. The proposed approach leverages the pix2pix network, a generative conditional adversarial network primarily designed for image-to-image translation tasks. By applying this network architecture, we aim to investigate its efficacy in tackling the specific challenge of cardiac fat segmentation, despite not being originally tailored for this purpose. The two types of fat deposits of interest in this study are referred to as epicardial and mediastinal fats, which are spatially separated by the pericardium. The experimental results demonstrated an average accuracy of 99.08% and f1-score 98.73 for the segmentation of the epicardial fat and 97.90% of accuracy and f1-score of 98.40 for the mediastinal fat. These findings represent the high precision and overlap agreement achieved by the proposed methodology. In comparison to existing studies, our approach exhibited superior performance in terms of f1-score and run time, enabling the images to be segmented in real time.
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Affiliation(s)
- Guilherme Santos da Silva
- Academic Department of Informatics, Universidade Tecnológica Federal do Paraná (UTFPR), Pato Branco, 85503-390, Brazil
| | - Dalcimar Casanova
- Academic Department of Informatics, Universidade Tecnológica Federal do Paraná (UTFPR), Pato Branco, 85503-390, Brazil
| | - Jefferson Tales Oliva
- Academic Department of Informatics, Universidade Tecnológica Federal do Paraná (UTFPR), Pato Branco, 85503-390, Brazil
| | - Erick Oliveira Rodrigues
- Academic Department of Informatics, Universidade Tecnológica Federal do Paraná (UTFPR), Pato Branco, 85503-390, Brazil; Graduate Program of Production and Systems Engineering, Universidade Tecnológica Federal do Paraná (UTFPR), Pato Branco, 85503-390, Brazil.
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Deepa D, Singh Y, Mansoor W, Hu W, Paul R, Carlsson GE. Comparative study of left atrium epicardial fat tissue pattern using persistent homology approach. BMC Res Notes 2022; 15:299. [PMID: 36109768 PMCID: PMC9479320 DOI: 10.1186/s13104-022-06173-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Accepted: 08/19/2022] [Indexed: 11/18/2022] Open
Abstract
Objective Atrial Fibrillation (A-fib) is an abnormal heartbeat condition in which the heart races and beats in an uncontrollable way. It is observed that the presence of increased epicardial fat/fatty tissue in the atrium can lead to A-fib. Persistent homology using topological features can be used to recapitulate enormous amounts of spatially complicated medical data into a visual code to identify a specific pattern of epicardial fat tissue with non-fat tissue. Our aim is to evaluate the topological pattern of left atrium epicardial fat tissue with non-fat tissue. Results A topological data analysis approach was acquired to study the imaging pattern between the left atrium epicardial fat tissue and non-fat tissue patches. The patches of eight patients from CT images of the left atrium heart were used and categorized into “left atrium epicardial fat tissue” and “non-fat tissue” groups. The features that distinguish the “epicardial fat tissue” and “non-fat tissue” groups are extracted using persistent homology (PH). Our result reveals that our proposed research can discriminate between left atrium epicardial fat tissue and non-fat tissue. Specifically, the range of Betti numbers in the epicardial tissue is smaller (0–30) than the non-fat tissue (0–100), indicating that non-fat tissue has good topology.
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Deepa D, Singh Y, Hu W, Wang MC. Radon descriptor-based machine learning using CT images to predict the fat tissue on left atrium in the heart. Proc Inst Mech Eng H 2022; 236:1232-1237. [DOI: 10.1177/09544119221110657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Heart disease has a higher fatality rate than any other disease. Increased Atrial fat on the left atrium has been discovered to cause Atrial Fibrillation (AF) in most patients. AF can put one’s life at risk and eventually lead to death. AF might worsen over time; therefore, it is crucial to have an early diagnosis and treatment. To evaluate the left atrium fat tissue pattern using Radon descriptor-based machine learning. This study developed a bridge between the Radon transform framework and machine learning to distinguish two distinct patterns. Motivated by a Radon descriptor-based machine learning approach, the patches of eight patients from CT images of the heart were used and categorized into “epicardial fat tissue” and “nonfat tissue” groups. The 10 feature vectors are extracted from each big patch using Radon descriptors and then fed into a traditional machine learning model. The results show that the proposed methodology discriminates between fat tissues and nonfat tissues clearly. KNN has shown the best performance with 96.77% specificity, 98.28% sensitivity, and 97.50% accuracy. To our knowledge, this study is the first attempt to provide a Radon transform-based machine learning method to distinguish between fat tissue and nonfat tissue on the left atrium. Our proposed research method could be potentially used in advanced interventions.
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Affiliation(s)
- Deepa Deepa
- Biomedical Engineering, Chung Yuan Christian University, Zhongli, Taoyuan City, Taiwan
| | - Yashbir Singh
- Biomedical Engineering, Chung Yuan Christian University, Zhongli, Taoyuan City, Taiwan
- Mayo Clinic, Rochester, MN, USA
| | - Weichih Hu
- Biomedical Engineering, Chung Yuan Christian University, Zhongli, Taoyuan City, Taiwan
| | - Ming Chen Wang
- Biomedical Engineering, Chung Yuan Christian University, Zhongli, Taoyuan City, Taiwan
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Bray JJH, Hanif MA, Alradhawi M, Ibbetson J, Dosanjh SS, Smith SL, Ahmad M, Pimenta D. Machine learning applications in cardiac computed tomography: a composite systematic review. EUROPEAN HEART JOURNAL OPEN 2022; 2:oeac018. [PMID: 35919128 PMCID: PMC9242067 DOI: 10.1093/ehjopen/oeac018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 03/10/2022] [Indexed: 12/02/2022]
Abstract
Artificial intelligence and machine learning (ML) models are rapidly being applied to the analysis of cardiac computed tomography (CT). We sought to provide an overview of the contemporary advances brought about by the combination of ML and cardiac CT. Six searches were performed in Medline, Embase, and the Cochrane Library up to November 2021 for (i) CT-fractional flow reserve (CT-FFR), (ii) atrial fibrillation (AF), (iii) aortic stenosis, (iv) plaque characterization, (v) fat quantification, and (vi) coronary artery calcium score. We included 57 studies pertaining to the aforementioned topics. Non-invasive CT-FFR can accurately be estimated using ML algorithms and has the potential to reduce the requirement for invasive angiography. Coronary artery calcification and non-calcified coronary lesions can now be automatically and accurately calculated. Epicardial adipose tissue can also be automatically, accurately, and rapidly quantified. Effective ML algorithms have been developed to streamline and optimize the safety of aortic annular measurements to facilitate pre-transcatheter aortic valve replacement valve selection. Within electrophysiology, the left atrium (LA) can be segmented and resultant LA volumes have contributed to accurate predictions of post-ablation recurrence of AF. In this review, we discuss the latest studies and evolving techniques of ML and cardiac CT.
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Affiliation(s)
- Jonathan James Hyett Bray
- Institute of Life Sciences 2, Swansea University Medical, School , Swansea, UK
- Cardiology Department, Royal Free Hospital, Royal Free London NHS Foundation Trust , London, UK
| | - Moghees Ahmad Hanif
- Cardiology Department, Royal Free Hospital, Royal Free London NHS Foundation Trust , London, UK
| | | | - Jacob Ibbetson
- Cardiology Department, Royal Free Hospital, Royal Free London NHS Foundation Trust , London, UK
| | | | - Sabrina Lucy Smith
- Barts and the London School of Medicine and Dentistry , London E1 2AD, UK
| | - Mahmood Ahmad
- Cardiology Department, Royal Free Hospital, Royal Free London NHS Foundation Trust , London, UK
- University College London Medical School , London WC1E 6DE, UK
| | - Dominic Pimenta
- Richmond Research Institute, St George’s Hospital, University of London , Cranmer Terrace, Tooting, London SW17 0RE, UK
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