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Prince MNH, Garcia B, Henn C, Yi Y, Susaki EA, Watakabe Y, Nemoto T, Lidke KA, Zhao H, Remiro IS, Liu S, Chakraborty T. Signal Improved ultra-Fast Light-sheet Microscope (SIFT) for large tissue imaging. RESEARCH SQUARE 2023:rs.3.rs-2990328. [PMID: 37461705 PMCID: PMC10350224 DOI: 10.21203/rs.3.rs-2990328/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/23/2023]
Abstract
Light-sheet fluorescence microscopy (LSFM) in conjunction with tissue clearing techniques enables morphological investigation of large tissues faster and with excellent optical sectioning. Recently, cleared tissue axially swept light-sheet microscope (ctASLM) demonstrated three-dimensional isotropic resolution in millimeter-scaled tissues. But ASLM based microscopes suffer from low detection signal and slow imaging speed. Here we report a simple and efficient imaging platform that employs precise control of two fixed distant light-sheet foci to carry out ASLM. This allowed us to carry out full field of view (FOV) imaging at 40 frames per second (fps) which is a four-fold improvement compared to the current state-of-the-art. In addition, in a particular frame rate, our method doubles the signal compared to the current ASLM technique. To augment the overall imaging performance, we also developed a deep learning based tissue information classifier that enables faster determination of tissue boundary. We demonstrated the performance of our imaging platform on various cleared tissue samples and demonstrated its robustness over a wide range of clearing protocols.
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Affiliation(s)
- Md Nasful Huda Prince
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, NM 87131, USA
| | - Benjamin Garcia
- Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA
| | - Cory Henn
- Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA
| | - Yating Yi
- Chinese Institute for Brain Research, Beijing 102206, China
| | - Etsuo A. Susaki
- Department of Biochemistry and Systems Biomedicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan
| | - Yuki Watakabe
- Division of Biophotonics, National Institute for Physiological Sciences, National Institutes of Natural Sciences, 5-1 Higashiyama, Okazaki, Aichi, 444-8787, Japan
- Biophotonics Research Group, Exploratory Research Center for Life and Living Systems, National Institutes of Natural Sciences, 5-1 Higashiyama, Okazaki, Aichi, 444-8787, Japan
| | - Tomomi Nemoto
- Division of Biophotonics, National Institute for Physiological Sciences, National Institutes of Natural Sciences, 5-1 Higashiyama, Okazaki, Aichi, 444-8787, Japan
- Biophotonics Research Group, Exploratory Research Center for Life and Living Systems, National Institutes of Natural Sciences, 5-1 Higashiyama, Okazaki, Aichi, 444-8787, Japan
| | - Keith A Lidke
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, NM 87131, USA
| | - Hu Zhao
- Chinese Institute for Brain Research, Beijing 102206, China
| | | | - Sheng Liu
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, NM 87131, USA
| | - Tonmoy Chakraborty
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, NM 87131, USA
- Comprehensive Cancer Center, University of New Mexico, Albuquerque, NM 87102, USA
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Lu W, Pei Z, Hu W, Tan C, Tong X, Feng Y, Sun X. Recent progress in optical clearing of eye tissues. Exp Eye Res 2021; 212:108796. [PMID: 34662543 DOI: 10.1016/j.exer.2021.108796] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 08/20/2021] [Accepted: 10/13/2021] [Indexed: 12/21/2022]
Abstract
The growing need for viewing the detailed 3D structures of various tissues and organs requires advanced tissue processing and imaging techniques. However, light scattering by tissues hinders detailed structural observations. To overcome this, the emerging technique of "tissue optical clearing" has been flourishing in recent decades, providing excellent opportunities for imaging deep, micro-scale structures of various organs, or even of the whole body. In recent years, advanced tissue clearing techniques have been optimized for specific tissues and organs. Among these tissues, the eye is unique owing to its delicate structure and pigmented retinal epithelial cells, calling for more work on making these tissues "transparent". In this review, we searched Medline and Embase for studies published between January 2006 and August 2021 using the terms "tissue optical clearing", "ophthalmology", "eye", and "optical clearing agents", and we reviewed the publications on the optical clearing techniques of eye tissue from 2006 to the present, including both the clearing procedures and the subsequent analytical processes, thus gaining more insight into the application of tissue optical clearing in basic eye research. Furthermore, we discuss the future potential of optical clearing applications in clinical ophthalmology.
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Affiliation(s)
- Wenhan Lu
- Department of Ophthalmology & Visual Science, Eye & ENT Hospital, Shanghai Medical College, Fudan University, Shanghai, 200031, China; Department of Integrative Medicine and Neurobiology, State Key Lab of Medical Neurobiology, Institute of Integrative Medicine of Fudan University, Institute of Brain Science, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, China
| | - Zhenle Pei
- Department of Integrative Medicine and Neurobiology, State Key Lab of Medical Neurobiology, Institute of Integrative Medicine of Fudan University, Institute of Brain Science, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, China
| | - Wei Hu
- Department of Integrative Medicine and Neurobiology, State Key Lab of Medical Neurobiology, Institute of Integrative Medicine of Fudan University, Institute of Brain Science, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, China
| | - Chen Tan
- Department of Ophthalmology & Visual Science, Eye & ENT Hospital, Shanghai Medical College, Fudan University, Shanghai, 200031, China
| | - Xiaoyu Tong
- Department of Integrative Medicine and Neurobiology, State Key Lab of Medical Neurobiology, Institute of Integrative Medicine of Fudan University, Institute of Brain Science, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, China
| | - Yi Feng
- Department of Integrative Medicine and Neurobiology, State Key Lab of Medical Neurobiology, Institute of Integrative Medicine of Fudan University, Institute of Brain Science, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, China.
| | - Xinghuai Sun
- Department of Ophthalmology & Visual Science, Eye & ENT Hospital, Shanghai Medical College, Fudan University, Shanghai, 200031, China; State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University, Shanghai, 200032, China; NHC Key Laboratory of Myopia, Chinese Academy of Medical Sciences, And Shanghai Key Laboratory of Visual Impairment and Restoration (Fudan University), Shanghai, 200031, China.
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