A mixture model with a reference-based automatic selection of components for disease classification from protein and/or gene expression levels

Cancer classification from microarray data for genomic disorder research using optimal discriminant independent component analysis and kernel extreme learning machine

One of the challenging tasks in the medicinal field is genomic disorder investigation and its classification from the microarray dataset. The microarray dataset reorganization and its classification is more complex and expensive in the biomedical research area due to the larger number of features in the microarray dataset. In this paper, we construct a hybrid feature selection method such as t test, Fisher ration, and Bayesian logistic regression to select genes and that reduce the time cost. Based on the features, the top-ranked features are selected via the best hybrid rank method. Thereafter, the features are extracted using the modified firefly optimization-based discriminant independent component analysis (MF-DICA). Especially, the modified firefly optimization algorithm is capable of improving the search efficiency of DICA. From the high dimensional microarray dataset, MF-DICA is used to obtain the best features within the entire search space. The kernel extreme learning machine classifies the gene features depending upon the most relevant class. Experimentally, six datasets namely Leukemia dataset, Diffuse Larger B-cell Lymphomas, Lung cancer, Breast cancer, Prostate tumor, and Colon dataset are chosen to evaluate the performance of proposed approaches. Finally, the experimental data demonstrate that the proposed method is well suitable to classify the microarray data.

Decision support methods for finding phenotype--disorder associations in the bone dysplasia domain

A lack of mature domain knowledge and well established guidelines makes the medical diagnosis of skeletal dysplasias (a group of rare genetic disorders) a very complex process. Machine learning techniques can facilitate objective interpretation of medical observations for the purposes of decision support. However, building decision support models using such techniques is highly problematic in the context of rare genetic disorders, because it depends on access to mature domain knowledge. This paper describes an approach for developing a decision support model in medical domains that are underpinned by relatively sparse knowledge bases. We propose a solution that combines association rule mining with the Dempster-Shafer theory (DST) to compute probabilistic associations between sets of clinical features and disorders, which can then serve as support for medical decision making (e.g., diagnosis). We show, via experimental results, that our approach is able to provide meaningful outcomes even on small datasets with sparse distributions, in addition to outperforming other Machine Learning techniques and behaving slightly better than an initial diagnosis by a clinician.