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For: Lamontagne J, Béland M, Forest A, Côté-Martin A, Nassif N, Tomaki F, Moriyón I, Moreno E, Paramithiotis E. Proteomics-based confirmation of protein expression and correction of annotation errors in the Brucella abortus genome. BMC Genomics 2010;11:300. [PMID: 20462421 PMCID: PMC2877026 DOI: 10.1186/1471-2164-11-300] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2009] [Accepted: 05/12/2010] [Indexed: 12/23/2022]  Open
Number Cited by Other Article(s)
1
Maxson ME, Das L, Goldberg MF, Porcelli SA, Chan J, Jacobs WR. Mycobacterium tuberculosis Central Metabolism Is Key Regulator of Macrophage Pyroptosis and Host Immunity. Pathogens 2023;12:1109. [PMID: 37764917 PMCID: PMC10535942 DOI: 10.3390/pathogens12091109] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 08/17/2023] [Accepted: 08/26/2023] [Indexed: 09/29/2023]  Open
2
Ba F, Ji X, Huang S, Zhang Y, Liu WQ, Liu Y, Ling S, Li J. Engineering Escherichia coli to Utilize Erythritol as Sole Carbon Source. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023;10:e2207008. [PMID: 36938858 DOI: 10.1002/advs.202207008] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 02/16/2023] [Indexed: 05/18/2023]
3
The regulon of Brucella abortus two-component system BvrR/BvrS reveals the coordination of metabolic pathways required for intracellular life. PLoS One 2022;17:e0274397. [PMID: 36129877 PMCID: PMC9491525 DOI: 10.1371/journal.pone.0274397] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 08/26/2022] [Indexed: 11/19/2022]  Open
4
Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis. Biomolecules 2020;10:biom10060836. [PMID: 32486122 PMCID: PMC7355635 DOI: 10.3390/biom10060836] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 04/30/2020] [Accepted: 05/19/2020] [Indexed: 12/24/2022]  Open
5
Garcia DC, Cheng X, Land ML, Standaert RF, Morrell-Falvey JL, Doktycz MJ. Computationally Guided Discovery and Experimental Validation of Indole-3-acetic Acid Synthesis Pathways. ACS Chem Biol 2019;14:2867-2875. [PMID: 31693336 DOI: 10.1021/acschembio.9b00725] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
6
Park WB, Im YB, Shim S, Yoo HS. Analysis of protein expression in Brucella abortus mutants with different growth rates by two-dimensional gel electrophoresis and LC-MS/MS peptide analysis. J Vet Sci 2018;19:216-231. [PMID: 29032658 PMCID: PMC5879070 DOI: 10.4142/jvs.2018.19.2.216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Revised: 09/12/2017] [Accepted: 09/22/2017] [Indexed: 11/20/2022]  Open
7
Yang Z, Tsui SKW. Functional Annotation of Proteins Encoded by the Minimal Bacterial Genome Based on Secondary Structure Element Alignment. J Proteome Res 2018;17:2511-2520. [PMID: 29757649 DOI: 10.1021/acs.jproteome.8b00262] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Herrou J, Czyż DM, Fiebig A, Willett JW, Kim Y, Wu R, Babnigg G, Crosson S. Molecular control of gene expression by Brucella BaaR, an IclR-type transcriptional repressor. J Biol Chem 2018;293:7437-7456. [PMID: 29567835 PMCID: PMC5949995 DOI: 10.1074/jbc.ra118.002045] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 03/19/2018] [Indexed: 01/06/2023]  Open
9
Zai X, Yang Q, Yin Y, Li R, Qian M, Zhao T, Li Y, Zhang J, Fu L, Xu J, Chen W. Relative Quantitative Proteomic Analysis of Brucella abortus Reveals Metabolic Adaptation to Multiple Environmental Stresses. Front Microbiol 2017;8:2347. [PMID: 29238329 PMCID: PMC5712581 DOI: 10.3389/fmicb.2017.02347] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Accepted: 11/15/2017] [Indexed: 11/19/2022]  Open
10
Zai X, Yang Q, Liu K, Li R, Qian M, Zhao T, Li Y, Yin Y, Dong D, Fu L, Li S, Xu J, Chen W. A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M. BMC Genomics 2017;18:402. [PMID: 28535754 PMCID: PMC5442703 DOI: 10.1186/s12864-017-3800-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 05/16/2017] [Indexed: 03/21/2023]  Open
11
Gómez LA, Alvarez FI, Fernández PA, Flores MR, Molina RE, Coloma RF, Oñate AA. Immunogenicity and Protective Response Induced by Recombinant Plasmids Based on the BAB1_0267 and BAB1_0270 Open Reading Frames of Brucella abortus 2308 in BALB/c Mice. Front Cell Infect Microbiol 2016;6:117. [PMID: 27747197 PMCID: PMC5041321 DOI: 10.3389/fcimb.2016.00117] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Accepted: 09/16/2016] [Indexed: 01/05/2023]  Open
12
Zhu X, Xie S, Armengaud J, Xie W, Guo Z, Kang S, Wu Q, Wang S, Xia J, He R, Zhang Y. Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline. Mol Cell Proteomics 2016;15:1791-807. [PMID: 26902207 PMCID: PMC5083088 DOI: 10.1074/mcp.m115.050989] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2015] [Revised: 02/04/2016] [Indexed: 11/06/2022]  Open
13
Kumar D, Mondal AK, Kutum R, Dash D. Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes. Proteomics 2015;16:226-40. [PMID: 26773550 DOI: 10.1002/pmic.201500263] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Revised: 09/18/2015] [Accepted: 09/28/2015] [Indexed: 01/04/2023]
14
Silva TMA, Mol JPS, Winter MG, Atluri V, Xavier MN, Pires SF, Paixão TA, Andrade HM, Santos RL, Tsolis RM. The predicted ABC transporter AbcEDCBA is required for type IV secretion system expression and lysosomal evasion by Brucella ovis. PLoS One 2014;9:e114532. [PMID: 25474545 PMCID: PMC4256435 DOI: 10.1371/journal.pone.0114532] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Accepted: 11/10/2014] [Indexed: 12/23/2022]  Open
15
Wareth G, Melzer F, Weise C, Neubauer H, Roesler U, Murugaiyan J. Proteomics-based identification of immunodominant proteins of Brucellae using sera from infected hosts points towards enhanced pathogen survival during the infection. Biochem Biophys Res Commun 2014;456:202-6. [PMID: 25446124 DOI: 10.1016/j.bbrc.2014.11.059] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 11/15/2014] [Indexed: 01/07/2023]
16
Kucharova V, Wiker HG. Proteogenomics in microbiology: taking the right turn at the junction of genomics and proteomics. Proteomics 2014;14:2360-675. [PMID: 25263021 DOI: 10.1002/pmic.201400168] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Revised: 08/18/2014] [Accepted: 09/23/2014] [Indexed: 12/14/2022]
17
Ortiz-Román L, Riquelme-Neira R, RobertoVidal, Oñate A. Roles of genomic island 3 (GI-3) BAB1_0267 and BAB1_0270 open reading frames (ORFs) in the virulence of Brucella abortus 2308. Vet Microbiol 2014;172:279-84. [DOI: 10.1016/j.vetmic.2014.05.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2014] [Revised: 04/29/2014] [Accepted: 05/04/2014] [Indexed: 12/25/2022]
18
Kumar D, Yadav AK, Kadimi PK, Nagaraj SH, Grimmond SM, Dash D. Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline. Mol Cell Proteomics 2013;12:3388-97. [PMID: 23882027 PMCID: PMC3820949 DOI: 10.1074/mcp.m112.027169] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2013] [Revised: 07/19/2013] [Indexed: 11/06/2022]  Open
19
de Barsy M, Greub G. Functional genomics of intracellular bacteria. Brief Funct Genomics 2013;12:341-53. [DOI: 10.1093/bfgp/elt012] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Ferreira AC, Chambel L, Tenreiro T, Cardoso R, Flor L, Dias IT, Pacheco T, Garin-Bastuji B, Le Flèche P, Vergnaud G, Tenreiro R, de Sá MIC. MLVA16 typing of Portuguese human and animal Brucella melitensis and Brucella abortus isolates. PLoS One 2012;7:e42514. [PMID: 22905141 PMCID: PMC3419166 DOI: 10.1371/journal.pone.0042514] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2012] [Accepted: 07/06/2012] [Indexed: 12/30/2022]  Open
21
Sun YH, de Jong MF, den Hartigh AB, Roux CM, Rolán HG, Tsolis RM. The small protein CydX is required for function of cytochrome bd oxidase in Brucella abortus. Front Cell Infect Microbiol 2012;2:47. [PMID: 22919638 PMCID: PMC3417669 DOI: 10.3389/fcimb.2012.00047] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2011] [Accepted: 03/17/2012] [Indexed: 01/01/2023]  Open
22
Sandalakis V, Psaroulaki A, De Bock PJ, Christidou A, Gevaert K, Tsiotis G, Tselentis Y. Investigation of rifampicin resistance mechanisms in Brucella abortus using MS-driven comparative proteomics. J Proteome Res 2012;11:2374-85. [PMID: 22360387 DOI: 10.1021/pr201122w] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
23
Williams AJ, Ekins S, Tkachenko V. Towards a gold standard: regarding quality in public domain chemistry databases and approaches to improving the situation. Drug Discov Today 2012;17:685-701. [PMID: 22426180 DOI: 10.1016/j.drudis.2012.02.013] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2011] [Revised: 01/17/2012] [Accepted: 02/28/2012] [Indexed: 01/25/2023]
24
Eskra L, Covert J, Glasner J, Splitter G. Differential expression of iron acquisition genes by Brucella melitensis and Brucella canis during macrophage infection. PLoS One 2012;7:e31747. [PMID: 22403618 PMCID: PMC3293887 DOI: 10.1371/journal.pone.0031747] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2011] [Accepted: 01/12/2012] [Indexed: 12/27/2022]  Open
25
Zhao L, Liu L, Leng W, Wei C, Jin Q. A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF. BMC Genomics 2011;12:528. [PMID: 22032405 PMCID: PMC3219829 DOI: 10.1186/1471-2164-12-528] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Accepted: 10/28/2011] [Indexed: 11/10/2022]  Open
26
Iannino F, Ugalde JE, Iñón de Iannino N. Brucella abortus efp gene is required for an efficient internalization in HeLa cells. Microb Pathog 2011;52:31-40. [PMID: 21983596 DOI: 10.1016/j.micpath.2011.09.008] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2011] [Revised: 09/22/2011] [Accepted: 09/26/2011] [Indexed: 12/24/2022]
27
Céspedes S, Salgado P, Retamal-Díaz A, Vidal R, Oñate A. Roles of genomic island 3 (GI-3) BAB1_0278 and BAB1_0263 open reading frames (ORFs) in the virulence of Brucella abortus in BALB/c mice. Vet Microbiol 2011;156:1-7. [PMID: 22005180 DOI: 10.1016/j.vetmic.2011.09.025] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2011] [Revised: 09/16/2011] [Accepted: 09/21/2011] [Indexed: 12/30/2022]
28
Liang L, Tan X, Juarez S, Villaverde H, Pablo J, Nakajima-Sasaki R, Gotuzzo E, Saito M, Hermanson G, Molina D, Felgner S, Morrow WJW, Liang X, Gilman RH, Davies DH, Tsolis RM, Vinetz JM, Felgner PL. Systems biology approach predicts antibody signature associated with Brucella melitensis infection in humans. J Proteome Res 2011;10:4813-24. [PMID: 21863892 PMCID: PMC3189706 DOI: 10.1021/pr200619r] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
29
Skultety L, Hajduch M, Flores-Ramirez G, Miernyk JA, Ciampor F, Toman R, Sekeyova Z. Proteomic comparison of virulent phase I and avirulent phase II of Coxiella burnetii, the causative agent of Q fever. J Proteomics 2011;74:1974-84. [PMID: 21616182 DOI: 10.1016/j.jprot.2011.05.017] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2010] [Revised: 04/20/2011] [Accepted: 05/09/2011] [Indexed: 01/06/2023]
30
Adamczyk-Poplawska M, Markowicz S, Jagusztyn-Krynicka EK. Proteomics for development of vaccine. J Proteomics 2011;74:2596-616. [PMID: 21310271 DOI: 10.1016/j.jprot.2011.01.019] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2010] [Revised: 01/26/2011] [Accepted: 01/31/2011] [Indexed: 12/20/2022]
31
Krug K, Nahnsen S, Macek B. Mass spectrometry at the interface of proteomics and genomics. MOLECULAR BIOSYSTEMS 2010;7:284-91. [PMID: 20967315 DOI: 10.1039/c0mb00168f] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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