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For: Liu GE, Matukumalli LK, Sonstegard TS, Shade LL, Van Tassell CP. Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences. BMC Genomics 2006;7:140. [PMID: 16759380 PMCID: PMC1525190 DOI: 10.1186/1471-2164-7-140] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2006] [Accepted: 06/07/2006] [Indexed: 11/10/2022]  Open
Number Cited by Other Article(s)
1
Charrier M, Leroux I, Pichon J, Schleder C, Larcher T, Hamel A, Magot A, Péréon Y, Lamirault G, Tremblay JP, Skuk D, Rouger K. Human MuStem cells are competent to fuse with nonhuman primate myofibers in a clinically relevant transplantation context: A proof-of-concept study. J Neuropathol Exp Neurol 2024;83:684-694. [PMID: 38752570 DOI: 10.1093/jnen/nlae044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]  Open
2
Chen N, Xia X, Hanif Q, Zhang F, Dang R, Huang B, Lyu Y, Luo X, Zhang H, Yan H, Wang S, Wang F, Chen J, Guan X, Liu Y, Li S, Jin L, Wang P, Sun L, Zhang J, Liu J, Qu K, Cao Y, Sun J, Liao Y, Xiao Z, Cai M, Mu L, Siddiki AZ, Asif M, Mansoor S, Babar ME, Hussain T, Silva GLLP, Gorkhali NA, Terefe E, Belay G, Tijjani A, Zegeye T, Gebre MG, Ma Y, Wang Y, Huang Y, Lan X, Chen H, Migliore NR, Colombo G, Semino O, Achilli A, Sinding MHS, Lenstra JA, Cheng H, Lu W, Hanotte O, Han J, Jiang Y, Lei C. Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome sequencing. Nat Commun 2023;14:7803. [PMID: 38016956 PMCID: PMC10684552 DOI: 10.1038/s41467-023-43626-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 11/14/2023] [Indexed: 11/30/2023]  Open
3
von Seth J, Dussex N, Díez-Del-Molino D, van der Valk T, Kutschera VE, Kierczak M, Steiner CC, Liu S, Gilbert MTP, Sinding MHS, Prost S, Guschanski K, Nathan SKSS, Brace S, Chan YL, Wheat CW, Skoglund P, Ryder OA, Goossens B, Götherström A, Dalén L. Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations. Nat Commun 2021;12:2393. [PMID: 33896938 PMCID: PMC8071806 DOI: 10.1038/s41467-021-22386-8] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 03/01/2021] [Indexed: 02/02/2023]  Open
4
Tsuchiya MTN, Dikow RB, Koepfli KP, Frandsen PB, Rockwood LL, Maldonado JE. Whole-Genome Sequencing of Procyonids Reveals Distinct Demographic Histories in Kinkajou (Potos flavus) and Northern Raccoon (Procyon lotor). Genome Biol Evol 2020;13:6040737. [PMID: 33331895 PMCID: PMC7851585 DOI: 10.1093/gbe/evaa255] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/30/2020] [Indexed: 01/20/2023]  Open
5
Silva P, Galaverni M, Ortega-Del Vecchyo D, Fan Z, Caniglia R, Fabbri E, Randi E, Wayne R, Godinho R. Genomic evidence for the Old divergence of Southern European wolf populations. Proc Biol Sci 2020;287:20201206. [PMID: 32693716 PMCID: PMC7423677 DOI: 10.1098/rspb.2020.1206] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
6
Upperman LR, Kinghorn BP, MacNeil MD, Van Eenennaam AL. Management of lethal recessive alleles in beef cattle through the use of mate selection software. Genet Sel Evol 2019;51:36. [PMID: 31382878 PMCID: PMC6683482 DOI: 10.1186/s12711-019-0477-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 06/18/2019] [Indexed: 12/20/2022]  Open
7
Rakotoarivelo AR, O’Donoghue P, Bruford MW, Moodley Y. An ancient hybridization event reconciles mito-nuclear discordance among spiral-horned antelopes. J Mammal 2019. [DOI: 10.1093/jmammal/gyz089] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
8
The Evolution and Population Diversity of Bison in Pleistocene and Holocene Eurasia: Sex Matters. DIVERSITY 2018. [DOI: 10.3390/d10030065] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
9
Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia. Nat Commun 2018;9:2337. [PMID: 29904051 PMCID: PMC6002414 DOI: 10.1038/s41467-018-04737-0] [Citation(s) in RCA: 190] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Accepted: 05/10/2018] [Indexed: 02/07/2023]  Open
10
Mays HL, Hung CM, Shaner PJ, Denvir J, Justice M, Yang SF, Roth TL, Oehler DA, Fan J, Rekulapally S, Primerano DA. Genomic Analysis of Demographic History and Ecological Niche Modeling in the Endangered Sumatran Rhinoceros Dicerorhinus sumatrensis. Curr Biol 2017;28:70-76.e4. [PMID: 29249659 DOI: 10.1016/j.cub.2017.11.021] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Revised: 10/11/2017] [Accepted: 11/07/2017] [Indexed: 12/30/2022]
11
Gautier M, Moazami-Goudarzi K, Levéziel H, Parinello H, Grohs C, Rialle S, Kowalczyk R, Flori L. Deciphering the Wisent Demographic and Adaptive Histories from Individual Whole-Genome Sequences. Mol Biol Evol 2016;33:2801-2814. [PMID: 27436010 PMCID: PMC5062319 DOI: 10.1093/molbev/msw144] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
12
The canine X chromosome is a sink for canine endogenous retrovirus transposition. GENE REPORTS 2016. [DOI: 10.1016/j.genrep.2016.05.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
13
Wang GD, Zhai W, Yang HC, Wang L, Zhong L, Liu YH, Fan RX, Yin TT, Zhu CL, Poyarkov AD, Irwin DM, Hytönen MK, Lohi H, Wu CI, Savolainen P, Zhang YP. Out of southern East Asia: the natural history of domestic dogs across the world. Cell Res 2016;26:21-33. [PMID: 26667385 PMCID: PMC4816135 DOI: 10.1038/cr.2015.147] [Citation(s) in RCA: 175] [Impact Index Per Article: 21.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Revised: 09/09/2015] [Accepted: 10/10/2015] [Indexed: 12/30/2022]  Open
14
Skuk D, Tremblay JP. Cell therapy in muscular dystrophies: many promises in mice and dogs, few facts in patients. Expert Opin Biol Ther 2015;15:1307-19. [PMID: 26076715 DOI: 10.1517/14712598.2015.1057564] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
15
Babarinde IA, Saitou N. Heterogeneous tempo and mode of conserved noncoding sequence evolution among four mammalian orders. Genome Biol Evol 2014;5:2330-43. [PMID: 24259317 PMCID: PMC3879966 DOI: 10.1093/gbe/evt177] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
16
Kõks S, Reimann E, Lilleoja R, Lättekivi F, Salumets A, Reemann P, Jaakma Ü. Sequencing and annotated analysis of full genome of Holstein breed bull. Mamm Genome 2014;25:363-73. [PMID: 24770584 DOI: 10.1007/s00335-014-9511-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2013] [Accepted: 03/18/2014] [Indexed: 12/21/2022]
17
Tsai MC, Blelloch G, Ravi R, Schwartz R. Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2013;10:1137-1149. [PMID: 23959633 PMCID: PMC4019315 DOI: 10.1109/tcbb.2013.98] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
18
Tarlinton RE, Barfoot HK, Allen CE, Brown K, Gifford RJ, Emes RD. Characterisation of a group of endogenous gammaretroviruses in the canine genome. Vet J 2013;196:28-33. [DOI: 10.1016/j.tvjl.2012.08.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2012] [Revised: 08/09/2012] [Accepted: 08/12/2012] [Indexed: 12/25/2022]
19
McDonell L, Drouin G. The abundance of processed pseudogenes derived from glycolytic genes is correlated with their expression level. Genome 2012;55:147-51. [PMID: 22309162 DOI: 10.1139/g2012-002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
20
Schmitz J, Brosius J. Exonization of transposed elements: A challenge and opportunity for evolution. Biochimie 2011;93:1928-34. [PMID: 21787833 DOI: 10.1016/j.biochi.2011.07.014] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2011] [Accepted: 07/11/2011] [Indexed: 10/17/2022]
21
Martínez Barrio Á, Ekerljung M, Jern P, Benachenhou F, Sperber GO, Bongcam-Rudloff E, Blomberg J, Andersson G. The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships. PLoS One 2011;6:e19832. [PMID: 21589882 PMCID: PMC3093408 DOI: 10.1371/journal.pone.0019832] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2010] [Accepted: 04/18/2011] [Indexed: 11/25/2022]  Open
22
Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE. Analysis of recent segmental duplications in the bovine genome. BMC Genomics 2009;10:571. [PMID: 19951423 PMCID: PMC2796684 DOI: 10.1186/1471-2164-10-571] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2009] [Accepted: 12/01/2009] [Indexed: 11/10/2022]  Open
23
Shepelev VA, Alexandrov AA, Yurov YB, Alexandrov IA. The evolutionary origin of man can be traced in the layers of defunct ancestral alpha satellites flanking the active centromeres of human chromosomes. PLoS Genet 2009;5:e1000641. [PMID: 19749981 PMCID: PMC2729386 DOI: 10.1371/journal.pgen.1000641] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2009] [Accepted: 08/11/2009] [Indexed: 02/01/2023]  Open
24
Adelson DL, Raison JM, Edgar RC. Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome. Proc Natl Acad Sci U S A 2009;106:12855-60. [PMID: 19625614 PMCID: PMC2722308 DOI: 10.1073/pnas.0901282106] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2009] [Indexed: 12/11/2022]  Open
25
Comparative genomics indicates the mammalian CD33rSiglec locus evolved by an ancient large-scale inverse duplication and suggests all Siglecs share a common ancestral region. Immunogenetics 2009;61:401-17. [PMID: 19337729 DOI: 10.1007/s00251-009-0372-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2008] [Accepted: 03/20/2009] [Indexed: 12/27/2022]
26
Mahler KL, Fleming JL, Dworkin AM, Gladman N, Cho HY, Mao JH, Balmain A, Toland AE. Sequence divergence of Mus spretus and Mus musculus across a skin cancer susceptibility locus. BMC Genomics 2008;9:626. [PMID: 19105829 PMCID: PMC2628916 DOI: 10.1186/1471-2164-9-626] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2008] [Accepted: 12/23/2008] [Indexed: 01/22/2023]  Open
27
Fox AK, Tuch BB, Chuang JH. Measuring the prevalence of regional mutation rates: an analysis of silent substitutions in mammals, fungi, and insects. BMC Evol Biol 2008;8:186. [PMID: 18588686 PMCID: PMC2447844 DOI: 10.1186/1471-2148-8-186] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2008] [Accepted: 06/27/2008] [Indexed: 12/22/2022]  Open
28
Brinkmeyer-Langford C, Raudsepp T, Gustafson-Seabury A, Chowdhary BP. A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. Cytogenet Genome Res 2008;120:164-72. [PMID: 18467843 DOI: 10.1159/000118758] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/06/2007] [Indexed: 11/19/2022]  Open
29
Kemkemer C, Kohn M, Kehrer-Sawatzki H, Minich P, Högel J, Froenicke L, Hameister H. Reconstruction of the ancestral ferungulate karyotype by electronic chromosome painting (E-painting). Chromosome Res 2007;14:899-907. [PMID: 17195924 DOI: 10.1007/s10577-006-1097-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2006] [Revised: 10/28/2006] [Accepted: 10/28/2006] [Indexed: 12/14/2022]
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