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Kaeswurm JAH, Neuwald DA, Straub LV, Buchweitz M. Impact of Cultivation and Storage Conditions on Total Mal d 1 Content and Isoallergen Profile in Apples. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:12975-12985. [PMID: 37625125 DOI: 10.1021/acs.jafc.3c02375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/27/2023]
Abstract
The allergen Mal d 1 is often responsible for adverse allergic reactions to fresh apples in northern and central Europe. The Mal d 1 content and isoallergen profile are proposed to have an impact on the allergenic potential of the fruit. Therefore, we investigated the impact of the cropping system on the Mal d 1 content and the isoallergen profile of apples by mass spectrometry for the varieties 'Jonagored' and 'Topaz'. To monitor the impact of storage time and conditions, apples of the varieties 'Santana' and 'Jonagold' were stored for up to 12 weeks under regular air (RA), under RA in combination with 1-methylcyclopropene (1-MCP) treatment, and under a controlled atmosphere (CA). The impact of the cropping system (integrated production vs organic production) was negligible. However, a significant increase in the Mal d 1 content during storage was observed, being higher when stored under CA conditions than under RA conditions. An additional treatment with 1-MCP prior to RA storage drastically reduced the level of Mal d 1 expression in the flesh of the apples by ∼50%. Furthermore, the content of isoallergens 1.03 and 1.06 increased disproportionately under CA conditions, while under RA conditions, only isoallergen 1.06 was affected. With the 1-MCP treatment, no changes in the isoallergen profile were obvious.
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Affiliation(s)
- Julia A H Kaeswurm
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
- Department of Chemistry, Institute of Food Chemistry, Hamburg University, Martin-Luther-King Platz 6, 20146 Hamburg, Germany
| | - Daniel A Neuwald
- Lake of Constance Research Centre for Fruit Cultivation (KOB), Schuhmacherhof 6, 88213 Ravensburg, Germany
| | - Leonie V Straub
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
- Lake of Constance Research Centre for Fruit Cultivation (KOB), Schuhmacherhof 6, 88213 Ravensburg, Germany
| | - Maria Buchweitz
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
- Department of Chemistry, Institute of Food Chemistry, Hamburg University, Martin-Luther-King Platz 6, 20146 Hamburg, Germany
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Kaeswurm JAH, Straub LV, Siegele A, Brockmeyer J, Buchweitz M. Characterization and Quantification of Mal d 1 Isoallergen Profiles and Contents in Traditional and Commercial Apple Varieties by Mass Spectrometry. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:2554-2565. [PMID: 36696630 DOI: 10.1021/acs.jafc.2c05801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The apple allergy in Northern Europe is a cross-reaction to the birch pollen allergy. No correlation between the allergenicity of an apple variety and the content of the major apple allergen Mal d 1, a homologue to the Bet v 1 allergen in birch, could be found using ELISA, so far. Therefore, an impact of polyphenols and/or differences in the isoallergen profile are discussed. To allow a more detailed analysis of the Mal d 1 content and the isoallergen profile, a mass spectrometric method was applied to investigate differences in the flesh and peel of 10 traditional varieties and 10 commercial breeds. The data revealed often, but not always, lower Mal d 1 contents in traditional varieties grown in orchard meadows, which was more obvious in the flesh. Differences among the peels were less pronounced. A closer look at the individual isoallergens 1.01, 1.02, 1.03, and 1.06 reveals an increased impact of the minor isoallergens 1.03 and 1.06 on the allergenic potential, since commercial breeds like Braeburn, Santana, and Holstein Cox, which are considered to have reduced allergenic potentials, were characterized by low levels of these isoallergens.
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Affiliation(s)
- Julia A H Kaeswurm
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Leonie V Straub
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Andreas Siegele
- Obstbauberatung Stuttgart, Liegenschaftsamt, Hospitalstraße 8, 70174 Stuttgart, Germany
| | - Jens Brockmeyer
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Maria Buchweitz
- Department of Food Chemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
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Vittani L, Populin F, Stuerz S, Buehlmann A, Khomenko I, Biasioli F, Bühlmann-Schütz S, Vrhovsek U, Masuero D, Zanella A, Busatto N, Costa F. Comparative transcriptome and metabolite survey reveal key pathways involved in the control of the chilling injury disorder superficial scald in two apple cultivars, 'Granny Smith' and 'Ladina'. FRONTIERS IN PLANT SCIENCE 2023; 14:1150046. [PMID: 37152125 PMCID: PMC10157158 DOI: 10.3389/fpls.2023.1150046] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Accepted: 03/24/2023] [Indexed: 05/09/2023]
Abstract
The low temperature normally applied to prevent fruit decay during the storage of apples, can also triggers the onset of a chilling injury disorder known as superficial scald. In this work, the etiology of this disorder and the mechanism of action of two preventing strategies, such as the application of 1-MCP (1-methylcyclopropene) and storage at low oxygen concentration in 'Granny Smith' and 'Ladina' apple cultivars were investigated. The metabolite assessment highlighted a reorganization of specific metabolites, in particular flavan-3-ols and unsaturated fatty acids, while the genome-wide transcriptomic analysis grouped the DEGs into four functional clusters. The KEGG pathway and GO enrichment analysis, together with the gene-metabolite interactome, showed that the treatment with 1-MCP prevented the development of superficial scald by actively promoting the production of unsaturated fatty acids, especially in 'Granny Smith'. 'Ladina', more susceptible to superficial scald and less responsive to the preventing strategies, was instead characterized by a higher accumulation of very long chain fatty acids. Storage at low oxygen concentration stimulated a higher accumulation of ethanol and acetaldehyde together with the expression of genes involved in anaerobic respiration, such as malate, alcohol dehydrogenase and pyruvate decarboxylase in both cultivars. Low oxygen concentration, likewise 1-MCP, through a direct control on ethylene prevented the onset of superficial scald repressing the expression of PPO, a gene encoding for the polyphenol oxidase enzyme responsible of the oxidation of chlorogenic acid. Moreover, in 'Granny Smith' apple, the expression of three members of the VII subgroups of ERF genes, encoding for elements coordinating the acclimation process to hypoxia in plants was observed. The global RNA-Seq pattern also elucidated a specific transcriptomic signature between the two cultivars, disclosing the effect of the different genetic background in the control of this disorder.
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Affiliation(s)
- Lorenzo Vittani
- Center Agriculture Food Environment C3A, University of Trento, San Michele all’Adige, Italy
| | - Francesca Populin
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | | | - Andreas Buehlmann
- Strategic Research Division Food Microbial Systems, Agroscope, Wädenswil, Switzerland
| | - Iuliia Khomenko
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Franco Biasioli
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | | | - Urska Vrhovsek
- Center Agriculture Food Environment C3A, University of Trento, San Michele all’Adige, Italy
| | - Domenico Masuero
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | | | - Nicola Busatto
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Fabrizio Costa
- Center Agriculture Food Environment C3A, University of Trento, San Michele all’Adige, Italy
- *Correspondence: Fabrizio Costa,
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Kaeswurm JH, Straub LV, Klußmann A, Brockmeyer J, Buchweitz M. New Mass Spectrometric Approach to Quantify the Major Isoallergens of the Apple Allergen Mal d 1. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:11813-11822. [PMID: 36074755 PMCID: PMC9504475 DOI: 10.1021/acs.jafc.2c03745] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 08/04/2022] [Accepted: 08/04/2022] [Indexed: 06/15/2023]
Abstract
Patients who suffer from birch pollinosis often develop adverse reactions to the consumption of fresh apples due to the structural similarity of the allergens Bet v 1 and Mal d 1 from birch and apples, respectively. A different allergenic potential for Mal d 1 isoallergens is postulated, but approaches to quantify the Mal d 1 isoallergen-specific are missing. Therefore, a bottom-up proteomics approach was developed to quantify Mal d 1 by stable isotope dilution and microHPLC-QTOF analyses. Marker peptides for individual isoallergens (Mal d 1.01-Mal d 1.03 and Mal d 1.06), combinations thereof (Mal d 1.01 + 1.02, Mal d 1.02 + 1.06, and Mal d 1.04 + 1.05), and two global marker peptides, comprising Mal d 1.01 + 1.02 + 1.04 + 1.05 and Mal d 1.03 + 1.06 + 1.07 + 1.08 + 1.09, were identified. By the use of an extraction standard (r-Mal d 1_mut), an optimized protocol for extraction and tryptic digestion of apple proteins was developed, and the variety-specific extraction efficiency was monitored for the flesh and peel of apples. The Mal d 1 contents in flesh and peel of five commercial apple breeds and four apple varieties from orchard meadows were quantified isoallergen-specific.
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Affiliation(s)
- Julia
A. H. Kaeswurm
- Department of Food Chemistry,
Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Leonie V. Straub
- Department of Food Chemistry,
Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Alexandra Klußmann
- Department of Food Chemistry,
Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Jens Brockmeyer
- Department of Food Chemistry,
Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
| | - Maria Buchweitz
- Department of Food Chemistry,
Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 5b, 70569 Stuttgart, Germany
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Chebib S, Meng C, Ludwig C, Bergmann KC, Becker S, Dierend W, Schwab W. Identification of allergenomic signatures in allergic and well-tolerated apple genotypes using LC-MS/MS. FOOD CHEMISTRY. MOLECULAR SCIENCES 2022; 4:100111. [PMID: 35592704 PMCID: PMC9110896 DOI: 10.1016/j.fochms.2022.100111] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 04/12/2022] [Accepted: 05/02/2022] [Indexed: 04/12/2023]
Abstract
The apple fruit (Malus domestica L. Borkh) is one of the most popular fruits worldwide. Beyond their beneficial properties, apples contain proteins that trigger allergic reactions in susceptible consumers. Mal d1 to d4 are allergens present in a variety of different isoforms in apples. In this study, we used proteomics to quantify all four Mal d proteins in 52 apple genotypes with varying allergenic potentials. A total of 195, 17, 14, and 18 peptides were found to be related to Mal d1, d2, d3, and d4 proteins, respectively of which 25 different Mal d proteins could be unambiguously identified. The allergenic potential of the Mal d isoforms was characterized by comparing the isoform abundance with the allergenic score of genotypes from oral challenge tests. The detected Mal d peptides presumably have different IgE binding properties and could be used as potential molecular markers to discriminate between hypoallergenic and hyperallergenic cultivars.
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Affiliation(s)
- Soraya Chebib
- Biotechnology of Natural Products, Technical University Munich, Liesel-Beckmann-Str. 1, 85354 Freising, Germany
| | - Chen Meng
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Gregor-Mendel-Straße 4, 85354 Freising, Germany
| | - Christina Ludwig
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Gregor-Mendel-Straße 4, 85354 Freising, Germany
| | - Karl-Christian Bergmann
- Allergy-Centre-Charité, Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Germany
| | - Sylvia Becker
- European Centre Allergy Research Foundation, Robert-Koch-Platz 7, 10115 Berlin, Germany
| | - Werner Dierend
- Faculty of Agricultural Science and Landscape Architecture, Fruit Science, University of Applied Sciences Osnabrück, Oldenburger Landstr. 24, 49090 Osnabrück, Germany
| | - Wilfried Schwab
- Biotechnology of Natural Products, Technical University Munich, Liesel-Beckmann-Str. 1, 85354 Freising, Germany
- Corresponding author.
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A TIR-NBS-LRR Gene MdTNL1 Regulates Resistance to Glomerella Leaf Spot in Apple. Int J Mol Sci 2022; 23:ijms23116323. [PMID: 35683002 PMCID: PMC9181576 DOI: 10.3390/ijms23116323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 06/03/2022] [Accepted: 06/04/2022] [Indexed: 12/18/2022] Open
Abstract
Glomerella leaf spot (GLS), caused by the fungus Colletotrichum fructicola, is one of the most devastating apple diseases. Our previous study reported that the GLS resistance locus was defined on the chromosome 15 region. Here, we further found a single-nucleotide polymorphism (SNP) site (SNP7309212) in the GLS resistance that was able to distinguish resistant cultivars (lines) from susceptible ones. On the basis of the SNP site, we cloned a TNL gene from the GLS resistant locus and named it MdTNL1 (NCBI Accession Number: ON402514). This gene contains a toll/interleukin-1 receptor transmembrane domain (TIR), nucleotide-binding sites (NBS), and leucine-rich repeat (LRR) domain. Subcellular location indicated that MdTNL1 was expressed in the nucleus and cell membrane. Ectopic overexpression of MdTNL1 in Nicotiana benthamiana caused cell death. We further demonstrated allelic polymorphisms in MdTNL1. It is noteworthy that NBS and LRR domains of the MdTNL1 protein serve as the repository for generating allelic diversity. Quantitative real-time PCR (qRT-PCR) assay revealed that MdTNL1 was highly expressed in resistant apple cultivar ‘Fuji’ after inoculation with C. fructicola, whereas susceptible cultivar ‘Golden Delicious’ exhibited low expression after inoculation. Over-expression of MdTNL1-1 in susceptible apple fruits and leaves improved disease resistance, while in ‘Orin’ calli, silencing the MdTNL1-1 gene conversely decreased GLS resistance. In conclusion, we identified a GLS associated with SNP7309212 and demonstrated that a TIR-NBS-LRR gene MdTNL1-1 positively regulates GLS resistance in apple.
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Abstract
This review provides a global overview on Rosaceae allergy and details the particularities of each fruit allergy induced by ten Rosaceae species: almond/peach/cherry/apricot/plum (Amygdaleae), apple/pear (Maleae), and raspberry/blackberry/strawberry (Rosoideae). Data on clinical symptoms, prevalence, diagnosis, and immunotherapies for the treatment of Rosaceae allergy are herein stated. Allergen molecular characterization, cross-reactivity/co-sensitization phenomena, the impact of food processing and digestibility, and the methods currently available for the Rosaceae detection/quantification in foods are also described. Rosaceae allergy has a major impact in context to pollen-food allergy syndrome (PFAS) and lipid transfer protein (LTP) allergies, being greatly influenced by geography, environment, and presence of cofactors. Peach, apple, and almond allergies are probably the ones most affecting the quality of life of the allergic-patients, although allergies to other Rosaceae fruits cannot be overlooked. From patients' perspective, self-allergy management and an efficient avoidance of multiple fruits are often difficult to achieve, which might raise the risk for cross-reactivity and co-sensitization phenomena and increase the severity of the induced allergic responses with time. At this point, the absence of effective allergy diagnosis (lack of specific molecular markers) and studies advancing potential immunotherapies are some gaps that certainly will prompt the progress on novel strategies to manage Rosaceae food allergies.
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Affiliation(s)
- Joana Costa
- REQUIMTE-LAQV, Faculdade de Farmácia, Universidade do Porto, Porto, Portugal
| | - Isabel Mafra
- REQUIMTE-LAQV, Faculdade de Farmácia, Universidade do Porto, Porto, Portugal
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Fulvio F, Paris R, Montanari M, Citti C, Cilento V, Bassolino L, Moschella A, Alberti I, Pecchioni N, Cannazza G, Mandolino G. Analysis of Sequence Variability and Transcriptional Profile of Cannabinoid synthase Genes in Cannabis sativa L. Chemotypes with a Focus on Cannabichromenic acid synthase. PLANTS (BASEL, SWITZERLAND) 2021; 10:1857. [PMID: 34579390 PMCID: PMC8466818 DOI: 10.3390/plants10091857] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 09/03/2021] [Accepted: 09/06/2021] [Indexed: 02/03/2023]
Abstract
Cannabis sativa L. has been long cultivated for its narcotic potential due to the accumulation of tetrahydrocannabinolic acid (THCA) in female inflorescences, but nowadays its production for fiber, seeds, edible oil and bioactive compounds has spread throughout the world. However, some hemp varieties still accumulate traces of residual THCA close to the 0.20% limit set by European Union, despite the functional gene encoding for THCA synthase (THCAS) is lacking. Even if some hypotheses have been produced, studies are often in disagreement especially on the role of the cannabichromenic acid synthase (CBCAS). In this work a set of European Cannabis genotypes, representative of all chemotypes, were investigated from a chemical and molecular point of view. Highly specific primer pairs were developed to allow an accurate distinction of different cannabinoid synthases genes. In addition to their use as markers to detect the presence of CBCAS at genomic level, they allowed the analysis of transcriptional profiles in hemp or marijuana plants. While the high level of transcription of THCAS and cannabidiolic acid synthase (CBDAS) clearly reflects the chemical phenotype of the plants, the low but stable transcriptional level of CBCAS in all genotypes suggests that these genes are active and might contribute to the final amount of cannabinoids.
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Affiliation(s)
- Flavia Fulvio
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
- Department of Sciences of Agriculture, Food Natural Resources and Engineering, University of Foggia, Via Napoli 25, 71122 Foggia, Italy
| | - Roberta Paris
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
| | - Massimo Montanari
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
| | - Cinzia Citti
- CNR NANOTEC—Institute of Nanotechnology, Via Monteroni, 73100 Lecce, Italy; (C.C.); (G.C.)
- Department of Life Science, University of Modena and Reggio Emilia, Via G. Campi 103, 41125 Modena, Italy
| | - Vincenzo Cilento
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
| | - Laura Bassolino
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
| | - Anna Moschella
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
| | - Ilaria Alberti
- CREA—Research Centre for Cereal and Industrial Crops, Via G. Amendola 82, 45100 Rovigo, Italy;
| | - Nicola Pecchioni
- CREA—Research Centre for Cereal and Industrial Crops, S.S. 673 Km 25,200, 71122 Foggia, Italy;
| | - Giuseppe Cannazza
- CNR NANOTEC—Institute of Nanotechnology, Via Monteroni, 73100 Lecce, Italy; (C.C.); (G.C.)
- Department of Life Science, University of Modena and Reggio Emilia, Via G. Campi 103, 41125 Modena, Italy
| | - Giuseppe Mandolino
- CREA—Research Centre for Cereal and Industrial Crops, Via di Corticella 133, 40128 Bologna, Italy; (F.F.); (M.M.); (V.C.); (L.B.); (A.M.); (G.M.)
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Siekierzynska A, Piasecka‐Kwiatkowska D, Myszka A, Burzynska M, Sozanska B, Sozanski T. Apple allergy: Causes and factors influencing fruits allergenic properties-Review. Clin Transl Allergy 2021; 11:e12032. [PMID: 34123364 PMCID: PMC8171779 DOI: 10.1002/clt2.12032] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 03/11/2021] [Accepted: 04/14/2021] [Indexed: 11/27/2022] Open
Abstract
BACKGROUND Apple tree fruits (Malus × domestica Borkh.) are a rich source of nutrients and nutraceuticals and are recommended as a part of the healthy, staple diet. However, apples could be also the cause of allergies including severe reactions. Allergies to fruits like apples are predominantly associated with pollinosis. In North and Central Europe, sensitisation to apples is caused mainly by cross-reactive birch pollen aeroallergen, whereas in the Mediterranean area of Europe, apple allergy is mostly associated with allergies to peach. The allergenicity of apples differ across cultivars but only a few varieties were studied. Some factors changing apples allergenicity were identified, including unmodifiable and potentially modifiable factors for example cultivation method, ripening stage and storage conditions. AIM This review presents current knowledge about the molecular basis of apple allergenicity and factors influencing its level. CONCLUSIONS Selecting cultivars with low potential of allergenicity, removing apple peel and heat treatment could reduce the risk of severe allergy reaction incidence and presumably can be used in birch pollen immunotherapy.
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Affiliation(s)
- Aleksandra Siekierzynska
- Department of Physiology and Plant BiotechnologyInstitute of Agricultural Sciences, Land Management and Environmental ProtectionUniversity of RzeszowRzeszowPoland
| | | | | | - Marta Burzynska
- Department of Food Biochemistry and AnalysisPoznan University of Life SciencesPoznanPoland
| | - Barbara Sozanska
- 1st Department of Pediatric Allergology and CardiologyWroclaw Medical UniversityWroclawPoland
| | - Tomasz Sozanski
- Department of PharmacologyWroclaw Medical UniversityWroclawPoland
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Siekierzynska A, Piasecka-Kwiatkowska D, Litwinczuk W, Burzynska M, Myszka A, Karpinski P, Zygala E, Piorecki N, Springer E, Sozanski T. Molecular and Immunological Identification of Low Allergenic Fruits among Old and New Apple Varieties. Int J Mol Sci 2021; 22:ijms22073527. [PMID: 33805442 PMCID: PMC8036863 DOI: 10.3390/ijms22073527] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 03/17/2021] [Accepted: 03/23/2021] [Indexed: 11/21/2022] Open
Abstract
About 50–70% of patients allergic to birch pollen suffer from sensitization after apple ingestion. Apple allergenicity was established in only few varieties. Studies were performed on apple fruits of 21 traditional and nine modern varieties organically, intensively, or integratively produced. The aim of the study was to assess whether the factors like cultivation method, maturity stage, genotype, or type of tissue place an impact on the allergenic potential of apples. To answer these questions, we used semiquantitative real-time PCR, ELISA, and immunoblotting. Apple allergen genes present divergent expression across apple cultivars. Expression of the Mal d 1.06A correlates with the Mal d 1 level and is affected by the cultivation method and maturity of the fruit. The content of the main allergen Mal d 1 varied widely across cultivars. Interestingly, in our study, the Gala variety presented a low Mal d 1 concentration regardless of the cultivation method. Based on the Mal d 1.06A expression, the Mal d 1 protein content, and the immunoreactivity assay, the Kandil Sinap, Kosztela, Rumianka from Alma-Ata, Kantówka Gdańska, Reinette Coulon, and Gala cultivars emerged as potentially hypoallergenic apple cultivars. Our study allowed distinguishing between potentially low, medium, and highly allergenic varieties.
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Affiliation(s)
- Aleksandra Siekierzynska
- Department of Physiology and Plant Biotechnology, Institute of Agricultural Sciences, Land Management and Environmental Protection, University of Rzeszow, Cwiklinskiej 2, 35-601 Rzeszow, Poland;
- Correspondence: ; Tel.: +48-17-785-4385
| | - Dorota Piasecka-Kwiatkowska
- Department of Food Biochemistry and Analysis, Poznan University of Life Sciences, Mazowiecka 48, 60-623 Poznan, Poland; (D.P.-K.); (M.B.)
| | - Wojciech Litwinczuk
- Department of Physiology and Plant Biotechnology, Institute of Agricultural Sciences, Land Management and Environmental Protection, University of Rzeszow, Cwiklinskiej 2, 35-601 Rzeszow, Poland;
| | - Marta Burzynska
- Department of Food Biochemistry and Analysis, Poznan University of Life Sciences, Mazowiecka 48, 60-623 Poznan, Poland; (D.P.-K.); (M.B.)
| | - Aleksander Myszka
- Institute of Medical Sciences, University of Rzeszow, Rejtana 16 c, 35-959 Rzeszow, Poland;
| | - Pawel Karpinski
- Department of Genetics, Wroclaw Medical University, Marcinkowskiego 1, 50-368 Wroclaw, Poland;
- Laboratory of Genomics & Bioinformatics, Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, 53-114 Wroclaw, Poland
| | - Elzbieta Zygala
- Arboretum and Department of Physiography in Bolestraszyce, 37-700 Przemysl, Poland; (E.Z.); or
| | - Narcyz Piorecki
- Arboretum and Department of Physiography in Bolestraszyce, 37-700 Przemysl, Poland; (E.Z.); or
- Department of Human Sciences, Institute of Physical Culture Sciences, University of Rzeszow, Towarnickiego 3, 35-959 Rzeszow, Poland
| | - Ewa Springer
- Center for Allergy Diagnostics and Treatment SNZOZ Alergologia Plus, 60-693 Poznan, Poland;
| | - Tomasz Sozanski
- Department of Pharmacology, Wroclaw Medical University, Jana Mikulicza-Radeckiego 2, 50-345 Wroclaw, Poland;
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Fulvio F, Martinelli T, Paris R. Selection and validation of reference genes for RT-qPCR normalization in different tissues of milk thistle (Silybum marianum, Gaert.). Gene 2021; 768:145272. [PMID: 33122080 DOI: 10.1016/j.gene.2020.145272] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 10/06/2020] [Accepted: 10/21/2020] [Indexed: 12/31/2022]
Abstract
Quantitative reverse transcription PCR is a sensitive technique for evaluating transcriptional profiles in different experimental datasets. To obtain a reliable quantification of the transcripts level, data normalization with stable reference genes is required. Stable reference genes are identified after analysis of their transcripts profile in every new experiment and species of interest. In Silybum marianum, a widely cultivated officinal plant, only few gene expression studies exist, and reference genes for RT-qPCR studies in the diverse plant tissues have never been investigated before. In this work, the expression stability of 10 candidate reference genes was evaluated in leaves, roots, stems and fruits of S. marianum grown under physiological environmental condition. The stability values for each candidate reference gene were calculated by four canonical statistical algorithms GeNorm, NormFinder, Bestkeeper and ΔCt method in different subsets of samples, then they were ranked with RefFinder from the most to the least suitable for normalization. Best combinations of reference genes are finally proposed for different experimental data sets, including all tissues, vegetative, and reproductive tissues separately. Three target genes putatively involved in important biosynthetic pathway leading to key metabolites in the fruits of milk thistle, such as silymarin and fatty acids, were analyzed with the chosen panels of reference genes, in comparison to the ones used in previous papers. To the best of our knowledge, this is the first report on a reliable and systematic identification and validation of the reference genes for RT-qPCR normalization to study gene expression in S. marianum.
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Affiliation(s)
- Flavia Fulvio
- Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria - Centro di ricerca Cerealicoltura e Colture Industriali, Via di Corticella 133, 40128 Bologna, Italy
| | - Tommaso Martinelli
- Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria - Centro di ricerca Cerealicoltura e Colture Industriali, Via di Corticella 133, 40128 Bologna, Italy; Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria - Centro di ricerca Difesa e Certificazione, Via di Lanciola 12/A, Loc. Cascine del Riccio, 50125 Firenze, Italy
| | - Roberta Paris
- Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria - Centro di ricerca Cerealicoltura e Colture Industriali, Via di Corticella 133, 40128 Bologna, Italy.
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12
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Tiered approach for the identification of Mal d 1 reduced, well tolerated apple genotypes. Sci Rep 2020; 10:9144. [PMID: 32499528 PMCID: PMC7272412 DOI: 10.1038/s41598-020-66051-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 05/06/2020] [Indexed: 12/02/2022] Open
Abstract
A rising proportion of the world population suffers from food-related allergies, including incompatibilities to apples. Although several allergenic proteins have been found in apples, the most important proteins that cause allergic reactions to apples in Central-Northern Europe, and North America are the Mal d 1 proteins, which are homologues of the birch pollen allergen Bet v 1. As the demand for hypoallergenic fruits is constantly increasing, we selected apple genotypes with a low total content of Mal d 1 by enzyme-linked immunosorbent assay analysis from segregating populations and tested the tolerability of these fruits through a human provocation study. This tiered approach, which exploited the natural diversity of apples, led to the identification of fruits, which were tolerated by allergic patients. In addition, we found a significant correlation (coefficient >0.76) between the total Mal d 1 content and flavan-3-ol amount and show that the isoform composition of the Mal d 1 proteins, which was determined by LC-MS/MS has a decisive effect on the tolerability of apple genotypes. The approach presented can be applied to other types of fruit and to other allergenic proteins. Therefore, the strategy can be used to reduce the allergen content of other plant foods, thereby improving food safety for allergy subjects.
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13
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Beikzadeh N, Varasteh AR. Investigation of the Effects of Apple Trees Infection by Erwinia amylovora on the Expression of Pathogenesis-Related Proteins Homologous to Allergens. Rep Biochem Mol Biol 2020; 8:376-382. [PMID: 32582795 PMCID: PMC7275835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Accepted: 06/03/2019] [Indexed: 06/11/2023]
Abstract
BACKGROUND Pathogenesis-related (PR) proteins are induced in response to biotic and abiotic stresses. Some plant proteins, including Mal d 1, Mal d 2, and Mal d 3 in apple, are allergens. In this study, the effects of Erwinia amylovora infection of two apple cultivars, Red and Golden Delicious, on the expression of PR proteins homologous to Mal d 1, 2, and 3 were investigated. METHODS In natural conditions trees with or without disease symptoms were sampled. In addition, seeds of the cultivars were grown in a greenhouse and seedlings were examined in three groups: 1) those inoculated by E. amylovora, 2) those inoculated by sterilized distilled water, and 3) uninoculated. Real-time PCR was used to determine expression of the Mal d 1, 2, and 3 genes (Mal d 1, 2, and 3) in infected and uninfected samples. Statistical analyses were performed using SPSS and graphs were produced by Excel. P values < 0.05 were considered significant. RESULTS The analysis of variance showed that in natural conditions the effect of infection on the mean relative expression of Mal d 2 and 3 was significant, and more so in Red than in Golden Delicious. The analysis of variance of the greenhouse samples showed that the effect of infection on the mean relative expression of Mal d 1, 2, and 3 in both cultivars was significant. CONCLUSION Our results suggest that Mal d 2 is more related to plant defense than Mal d 1 or Mal d 3, and is more highly expressed in E. amylovora-resistant than in E. amylovora-sensitive cultivars.
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Affiliation(s)
- Nasser Beikzadeh
- Khorasan Razavi Agricultural and Natural Resources Research and Education Center, AREEO, Mashhad, Iran.
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14
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Takaiwa F, Ogo Y, Wakasa Y. Specific region affects the difference in accumulation levels between apple food allergen Mal d 1 and birch pollen allergen Bet v 1 which are expressed in vegetative tissues of transgenic rice. PLANT MOLECULAR BIOLOGY 2018; 98:439-454. [PMID: 30350245 DOI: 10.1007/s11103-018-0789-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2018] [Accepted: 10/14/2018] [Indexed: 06/08/2023]
Abstract
Specific domain of the Mal d 1 was identified to be mainly involved in higher accumulation level in vegetative tissues of transgenic rice than the Bet v 1. Apple food allergen Mal d 1 and birch pollen allergen Bet v 1 belong to the same pathogen related protein 10 (PR10) family. When green fluorescent protein (GFP) fused to either of these allergens was expressed as a secretory protein in transgenic rice by ligating an N terminal signal peptide and a C terminal KDEL ER retention signal under the control of the maize ubiquitin constitutive promoter, the GFP:Mald1 highly accumulated in various tissues, whereas accumulation level of the GFP:Betv1 was remarkably reduced in vegetative tissues except for seed. Analysis by RT-PCR exhibited that there was little difference in their transcript levels, indicating the involvement of post-transcriptional regulation. To investigate the cause of such difference in accumulation levels, deletion analysis of the Mal d 1 and domain swapping between them were carried out in transgenic rice. The results showed that the region between positions 41-90 in the Mal d 1 is predominantly implicated in higher level accumulation in vegetative tissues as well as seed as compared with the Bet v 1. The GFP:Mald1 was localized in oligomeric form within ER lumen or ER-derived particles in vegetative tissues, whereas in seed mainly deposited into novel huge ER-derived protein bodies with the size of 5-10 µm in aleurone cells.
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Affiliation(s)
- Fumio Takaiwa
- Plant Molecular Farming Unit, Division of Biotechnology, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Owashi 1-2, Tsukuba, Ibaraki, 305-8634, Japan.
| | - Yuko Ogo
- Plant Molecular Farming Unit, Division of Biotechnology, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Owashi 1-2, Tsukuba, Ibaraki, 305-8634, Japan
- Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan
| | - Yuhya Wakasa
- Plant Molecular Farming Unit, Division of Biotechnology, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Owashi 1-2, Tsukuba, Ibaraki, 305-8634, Japan
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15
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Paris R, Pagliarani G, Savazzini F, Aloisi I, Iorio RA, Tartarini S, Ricci G, Del Duca S. Comparative analysis of allergen genes and pro-inflammatory factors in pollen and fruit of apple varieties. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 264:57-68. [PMID: 28969803 DOI: 10.1016/j.plantsci.2017.08.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Revised: 07/20/2017] [Accepted: 08/16/2017] [Indexed: 06/07/2023]
Abstract
Allergy to freshly consumed apple fruits is often associated to pollinosis and manifested as oral allergy syndrome (OAS). The allergenic properties of apple varieties differ greatly, spanning from low allergenic to high allergenic varieties. The knowledge of the genetic determinants for allergenicity has been of great interest in scientific community for several years, but the molecular mechanisms involved are still little understood. Here, factors putatively involved in allergenicity were investigated at biochemical and molecular level in pollen and in fruits of apple varieties differing in their allergenic potential. Among putative sensitizing factors, transglutaminase (TGase) and phospholipase A2 (PLA2) were considered together with reactive oxygen species (ROS) and known apple allergen genes, with particular attention devoted to the Mal d 1 gene family, the most important one in sensitization. We found that the expression of some allergen genes and the activities of TGase, PLA2 and ROS producing enzyme are lower in the hypo-allergenic variety 'Durello di Forlì' in comparison with the high-allergenic genotypes 'Gala' and 'Florina'. These results highlight correlations among allergen expressions, enzymatic activities and apple cultivars; these data underline the possibility that some of them could be used in the future as markers for allergenicity.
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Affiliation(s)
- Roberta Paris
- CREA - Council for Agricultural Research and Economics, Research Centre for Cereal and Industrial Crops, Via di Corticella, 133, 40128 Bologna, Italy
| | - Giulia Pagliarani
- Department of Agricultural Sciences, University of Bologna, Viale Giuseppe Fanin 46, 40127 Bologna, Italy
| | - Federica Savazzini
- Department of Agricultural Sciences, University of Bologna, Viale Giuseppe Fanin 46, 40127 Bologna, Italy
| | - Iris Aloisi
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy
| | - Rosa Anna Iorio
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy
| | - Stefano Tartarini
- Department of Agricultural Sciences, University of Bologna, Viale Giuseppe Fanin 46, 40127 Bologna, Italy
| | - Giampaolo Ricci
- Department of Medical and Surgical Sciences, University of Bologna, Via Massarenti 11, 40138 Bologna, Italy
| | - Stefano Del Duca
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy.
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16
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Ahammer L, Grutsch S, Kamenik AS, Liedl KR, Tollinger M. Structure of the Major Apple Allergen Mal d 1. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:1606-1612. [PMID: 28161953 PMCID: PMC5334782 DOI: 10.1021/acs.jafc.6b05752] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 02/03/2017] [Accepted: 02/05/2017] [Indexed: 05/24/2023]
Abstract
More than 70% of birch pollen-allergic patients develop allergic cross-reactions to the major allergen found in apple fruits (Malus domestica), the 17.5 kDa protein Mal d 1. Allergic reactions against this protein result from initial sensitization to the major allergen from birch pollen, Bet v 1. Immunologic cross-reactivity of Bet v 1-specific IgE antibodies with Mal d 1 after apple consumption can subsequently provoke severe oral allergic syndromes. This study presents the three-dimensional NMR solution structure of Mal d 1 (isoform Mal d 1.0101, initially cloned from 'Granny Smith' apples). This protein is composed of a seven-stranded antiparallel β-sheet and three α-helices that form a large internal cavity, similar to Bet v 1 and other cross-reactive food allergens. The Mal d 1 structure provides the basis for elucidating the details of allergic cross-reactivity between birch pollen and apple allergens on a molecular level.
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Affiliation(s)
- Linda Ahammer
- Institute
of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, A-6020 Innsbruck, Austria
| | - Sarina Grutsch
- Institute
of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, A-6020 Innsbruck, Austria
| | - Anna S. Kamenik
- Institute
of General, Inorganic and Theoretical Chemistry, Center for Molecular
Biosciences Innsbruck (CMBI), University
of Innsbruck, Innrain
80/82, A-6020 Innsbruck, Austria
| | - Klaus R. Liedl
- Institute
of General, Inorganic and Theoretical Chemistry, Center for Molecular
Biosciences Innsbruck (CMBI), University
of Innsbruck, Innrain
80/82, A-6020 Innsbruck, Austria
| | - Martin Tollinger
- Institute
of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, A-6020 Innsbruck, Austria
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17
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van de Wiel CCM, Schaart JG, Lotz LAP, Smulders MJM. New traits in crops produced by genome editing techniques based on deletions. PLANT BIOTECHNOLOGY REPORTS 2017; 11:1-8. [PMID: 28386301 PMCID: PMC5360818 DOI: 10.1007/s11816-017-0425-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2017] [Accepted: 01/23/2017] [Indexed: 05/21/2023]
Abstract
One of the most promising New Plant Breeding Techniques is genome editing (also called gene editing) with the help of a programmable site-directed nuclease (SDN). In this review, we focus on SDN-1, which is the generation of small deletions or insertions (indels) at a precisely defined location in the genome with zinc finger nucleases (ZFN), TALENs, or CRISPR-Cas9. The programmable nuclease is used to induce a double-strand break in the DNA, while the repair is left to the plant cell itself, and mistakes are introduced, while the cell is repairing the double-strand break using the relatively error-prone NHEJ pathway. From a biological point of view, it could be considered as a form of targeted mutagenesis. We first discuss improvements and new technical variants for SDN-1, in particular employing CRISPR-Cas, and subsequently explore the effectiveness of targeted deletions that eliminate the function of a gene, as an approach to generate novel traits useful for improving agricultural sustainability, including disease resistances. We compare them with examples of deletions that resulted in novel functionality as known from crop domestication and classical mutation breeding (both using radiation and chemical mutagens). Finally, we touch upon regulatory and access and benefit sharing issues regarding the plants produced.
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Affiliation(s)
| | - J. G. Schaart
- Wageningen University and Research, Wageningen, The Netherlands
| | - L. A. P. Lotz
- Wageningen University and Research, Wageningen, The Netherlands
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18
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Vegro M, Eccher G, Populin F, Sorgato C, Savazzini F, Pagliarani G, Tartarini S, Pasini G, Curioni A, Antico A, Botton A. Old Apple (Malus domestica L. Borkh) Varieties with Hypoallergenic Properties: An Integrated Approach for Studying Apple Allergenicity. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:9224-9236. [PMID: 27933989 DOI: 10.1021/acs.jafc.6b03976] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Freshly consumed apples (Malus domestica L. Borkh) can cause allergic reactions because of the presence of four classes of allergens. Knowledge of the genetic factors affecting the allergenic potential of apples would provide important information for the selection of hypoallergenic genotypes, which can be combined with the adoption of new agronomical practices to produce fruits with a reduced amount of allergens. In the present research, a multiple analytical approach was adopted to characterize the allergenic potential of 24 apple varieties released at different ages (pre- and post-green revolution). A specific workflow was set up including protein quantification by means of polyclonal antibodies, immunological analyses with sera of allergic subjects, enzymatic assays, clinical assessments on allergic patients, and gene expression assays on fruit samples. Taken as a whole, the results indicate that most of the less allergenic genotypes were found among those deriving from selection processes carried out prior to the so-called "green revolution".
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Affiliation(s)
- Mara Vegro
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
| | - Giulia Eccher
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
| | - Francesca Populin
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
| | - Chiara Sorgato
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
| | - Federica Savazzini
- Department of Agricultural Science, University of Bologna , Viale Fanin 46, 40127 Bologna, Italy
| | - Giulia Pagliarani
- Department of Agricultural Science, University of Bologna , Viale Fanin 46, 40127 Bologna, Italy
| | - Stefano Tartarini
- Department of Agricultural Science, University of Bologna , Viale Fanin 46, 40127 Bologna, Italy
| | - Gabriella Pasini
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
| | - Andrea Curioni
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
| | - Andrea Antico
- Allergy Unit, Ospedale Civile Srl , Via Guido Tonello 5, 46049 Volta Mantovana (Mantova), Italy
| | - Alessandro Botton
- Department of Agronomy, Food, Natural Resources, Animals and Environment - DAFNAE - Agripolis, University of Padova , Viale dell'università 16, 35020 Legnaro (Padova), Italy
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19
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Wu J, Chen L, Lin D, Ma Z, Deng X. Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus Fruits. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:9089-9098. [PMID: 27794596 DOI: 10.1021/acs.jafc.6b03410] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The effects of tissue type, harvest maturity, and genetic factors on the expression of genes that related to citrus fruit allergies remain poorly understood. In the present study, a multiplex real-time PCR assay was developed to monitor the expression of citrus allergen genes individually with the advantages of much fewer sample requirements and simultaneously multiple target genes detection. Gene specific primer pairs and Taqman probes of three citrus allergen genes Cit s 1.01, Cit s 2.01, and Cit s 3.01 and the house-keeping gene β-actin were designed based on gene sequence differences. The PCR results showed that differential expression patterns were found during the ripening process. The expression levels of Cit s 3.01 were much higher than those of Cit s 1.01 and Cit s 2.01 in both peel and pulp tissues among 10 citrus cultivars. Data suggested that Kao Phuang Pummelo could be safely consumed with a potential low risk in allergenicity. Considering that assessing allergenicity is one of the tests in food safety, this assay might also facilitate the breeding and production of "allergy-friendly" citrus fruits.
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Affiliation(s)
- Jinlong Wu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University , Wuhan 430070, China
| | - Lin Chen
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University , Wuhan 430070, China
| | - Dingbo Lin
- Department of Nutritional Sciences, Oklahoma State University , 419 Human Sciences, Stillwater, Oklahoma 74078, United States
| | - Zhaocheng Ma
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University , Wuhan 430070, China
| | - Xiuxin Deng
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University , Wuhan 430070, China
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20
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Ahammer L, Grutsch S, Tollinger M. NMR resonance assignments of the major apple allergen Mal d 1. BIOMOLECULAR NMR ASSIGNMENTS 2016; 10:287-90. [PMID: 27165578 PMCID: PMC5039217 DOI: 10.1007/s12104-016-9685-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2016] [Accepted: 04/30/2016] [Indexed: 05/26/2023]
Abstract
The major apple allergen Mal d 1 is the predominant cause of apple (Malus domestica) allergies in large parts of Europe and Northern America. Allergic reactions against this 17.5 kDa protein are the consequence of initial sensitization to the structurally homologous major allergen from birch pollen, Bet v 1. Consumption of apples can subsequently provoke immunologic cross-reactivity of Bet v 1-specific antibodies with Mal d 1 and trigger severe oral allergic syndroms, affecting more than 70 % of all individuals that are sensitized to birch pollen. While the accumulated immunological data suggest that Mal d 1 has a three-dimensional fold that is similar to Bet v 1, experimental structural data for this protein are not available to date. In a first step towards structural characterization of Mal d 1, backbone and side chain (1)H, (13)C and (15)N chemical shifts of the isoform Mal d 1.0101 were assigned. The NMR-chemical shift data show that this protein is composed of seven β-strands and three α-helices, which is in accordance with the reported secondary structure of the major birch pollen allergen, indicating that Mal d 1 and Bet v 1 indeed have similar three-dimensional folds. The next stage in the characterization of Mal d 1 will be to utilize these resonance assignments in solving the solution structure of this protein.
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Affiliation(s)
- Linda Ahammer
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, 6020, Innsbruck, Austria
| | - Sarina Grutsch
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, 6020, Innsbruck, Austria
| | - Martin Tollinger
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82, 6020, Innsbruck, Austria.
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21
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Pagliarani G, Paris R, Arens P, Tartarini S, Ricci G, Smulders MJM, Van De Weg EW. Erratum to: A qRT-PCR assay for the expression of all Mal d 1 isoallergen genes. BMC PLANT BIOLOGY 2016; 16:83. [PMID: 27072808 PMCID: PMC4828853 DOI: 10.1186/s12870-016-0757-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2016] [Accepted: 03/13/2016] [Indexed: 06/05/2023]
Affiliation(s)
- Giulia Pagliarani
- Wageningen UR Plant Breeding, Plant Research International, Droevendaalsesteeg 1, Wageningen, PB 6708, The Netherlands.
- Department of Fruit Tree and Woody Plant Sciences, University of Bologna, Viale Fanin 46, Bologna, 40127, Italy.
| | - Roberta Paris
- Department of Fruit Tree and Woody Plant Sciences, University of Bologna, Viale Fanin 46, Bologna, 40127, Italy
- Present address: Consiglio per la Ricerca e la sperimentazione in Agricoltura-Centro di Ricerca per le Colture Industriali, via di Corticella 133, Bologna, 40128, Italy
| | - Paul Arens
- Wageningen UR Plant Breeding, Plant Research International, Droevendaalsesteeg 1, Wageningen, PB 6708, The Netherlands
| | - Stefano Tartarini
- Department of Fruit Tree and Woody Plant Sciences, University of Bologna, Viale Fanin 46, Bologna, 40127, Italy
| | - Giampaolo Ricci
- Department of Paediatrics, University of Bologna, Via Massarenti 11, Bologna, 40138, Italy
| | - Marinus J M Smulders
- Wageningen UR Plant Breeding, Plant Research International, Droevendaalsesteeg 1, Wageningen, PB 6708, The Netherlands
| | - Eric W Van De Weg
- Wageningen UR Plant Breeding, Plant Research International, Droevendaalsesteeg 1, Wageningen, PB 6708, The Netherlands
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22
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Chizzali C, Gusberti M, Schouten HJ, Gessler C, Broggini GAL. Cisgenic Rvi6 scab-resistant apple lines show no differences in Rvi6 transcription when compared with conventionally bred cultivars. PLANTA 2016; 243:635-644. [PMID: 26586177 DOI: 10.1007/s00425-015-2432-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Accepted: 11/09/2015] [Indexed: 06/05/2023]
Abstract
The expression of the apple scab resistance gene Rvi6 in different apple cultivars and lines is not modulated by biotic or abiotic factors. All commercially important apple cultivars are susceptible to Venturia inaequalis, the causal organism of apple scab. A limited number of apple cultivars were bred to express the resistance gene Vf from the wild apple genotype Malus floribunda 821. Positional cloning of the Vf locus allowed the identification of the Rvi6 (formerly HcrVf2) scab resistance gene that was subsequently used to generate cisgenic apple lines. It is important to understand and compare how this resistance gene is transcribed and modulated during infection in conventionally bred cultivars and in cisgenic lines. The aim of this work was to study the transcription pattern of Rvi6 in three classically bred apple cultivars and six lines of 'Gala' genetically modified to express Rvi6. Rvi6 transcription was analyzed at two time points using quantitative real-time PCR (RT-qPCR) following inoculation with V. inaequalis conidia or water. Rvi6 transcription was assessed in relation to five reference genes. β-Actin, RNAPol, and UBC were the most suited to performing RT-qPCR experiments on Malus × domestica. Inoculation with V. inaequalis conidia under conditions conducive to scab infection failed to produce any significant changes to the transcription level of Rvi6. Rvi6 expression levels were inconsistent in response to external treatments in the different apple cultivars, and transgenic, intragenic or cisgenic lines.
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Affiliation(s)
- Cornelia Chizzali
- Plant Pathology, Institute of Integrative Biology, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland.
- Department of Biomolecular Chemistry, Leibniz Institute for Natural Product Research and Infection Biology, Beutenbergstrasse 11a, 07745, Jena, Germany.
| | - Michele Gusberti
- Plant Pathology, Institute of Integrative Biology, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland
| | - Henk J Schouten
- Wageningen UR Plant Breeding, Wageningen University and Research Centre, PO Box 16, 6700 AA, Wageningen, The Netherlands
| | - Cesare Gessler
- Plant Pathology, Institute of Integrative Biology, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland
| | - Giovanni A L Broggini
- Plant Pathology, Institute of Integrative Biology, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland
- Agroscope, Institute for Plant Production Sciences, Schloss 1, 8820, Wädenswil, Switzerland
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Dubois AEJ, Pagliarani G, Brouwer RM, Kollen BJ, Dragsted LO, Eriksen FD, Callesen O, Gilissen LJWJ, Krens FA, Visser RGF, Smulders MJM, Vlieg-Boerstra BJ, Flokstra-de Blok BJ, van de Weg WE. First successful reduction of clinical allergenicity of food by genetic modification: Mal d 1-silenced apples cause fewer allergy symptoms than the wild-type cultivar. Allergy 2015; 70:1406-12. [PMID: 26138410 DOI: 10.1111/all.12684] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/23/2015] [Indexed: 11/28/2022]
Abstract
BACKGROUND Genetic modification of allergenic foods such as apple has the potential to reduce their clinical allergenicity, but this has never been studied by oral challenges in allergic individuals. METHODS We performed oral food challenges in 21 apple-allergic individuals with Elstar apples which had undergone gene silencing of the major allergen of apple, Mal d 1, by RNA interference. Downregulation of Mal d 1 gene expression in the apples was verified by qRT-PCR. Clinical responses to the genetically modified apples were compared to those seen with the wild-type Elstar using a visual analogue scale (VAS). RESULTS Gene silencing produced two genetically modified apple lines expressing Mal d 1.02 and other Mal d 1 gene mRNA levels which were extensively downregulated, that is only 0.1-16.4% (e-DR1) and 0.2-9.9% (e-DR2) of those of the wild-type Elstar, respectively. Challenges with these downregulated apple lines produced significantly less intense maximal symptoms to the first dose (Vmax1) than with Elstar (Vmax1 Elstar 3.0 mm vs 0.0 mm for e-DR1, P = 0.017 and 0.0 mm for e-DR2, P = 0.043), as well as significantly less intense mean symptoms per dose (meanV/d) than with Elstar (meanV/d Elstar 2.2 mm vs 0.2 mm for e-DR1, P = 0.017 and 0.0 mm for e-DR2, P = 0.043). Only one subject (5%) remained symptom-free when challenged with the Elstar apple, whereas 43% did so with e-DR1 and 63% with e-DR2. CONCLUSION These data show that mRNA silencing of Mal d 1 results in a marked reduction of Mal d 1 gene expression in the fruit and reduction of symptoms when these apples are ingested by allergic subjects. Approximately half of the subjects developed no symptoms whatsoever, and virtually all subjects wished to consume the apple again in the future.
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Affiliation(s)
- A. E. J. Dubois
- Department of Pediatric Pulmonology and Pediatric Allergy, and GRIAC Research Institute; Beatrix Children's Hospital; University Medical Center Groningen; University of Groningen; Groningen The Netherlands
| | - G. Pagliarani
- Wageningen UR Plant Breeding; Wageningen University and Research Centre; Wageningen The Netherlands
| | - R. M. Brouwer
- Department of Pediatric Pulmonology and Pediatric Allergy, and GRIAC Research Institute; Beatrix Children's Hospital; University Medical Center Groningen; University of Groningen; Groningen The Netherlands
| | - B. J. Kollen
- Department of General Practice, and GRIAC Research Institute; University Medical Center Groningen; University of Groningen; Groningen The Netherlands
| | - L. O. Dragsted
- Department of Nutrition, Exercise and Sports; University of Copenhagen; Frederiksberg Denmark
| | - F. D. Eriksen
- Technical University of Denmark; National Food Institute, Toxicology and Risk Assessment; Søborg Denmark
| | - O. Callesen
- Department of Horticulture; Faculty of Agricultural Sciences; University of Aarhus; Årslev Denmark
| | - L. J. W. J. Gilissen
- Bioscience; Wageningen University and Research Centre; Wageningen The Netherlands
- Allergy Consortium Wageningen; Wageningen University and Research Centre; Wageningen The Netherlands
| | - F. A. Krens
- Wageningen UR Plant Breeding; Wageningen University and Research Centre; Wageningen The Netherlands
| | - R. G. F. Visser
- Allergy Consortium Wageningen; Wageningen University and Research Centre; Wageningen The Netherlands
| | - M. J. M. Smulders
- Wageningen UR Plant Breeding; Wageningen University and Research Centre; Wageningen The Netherlands
- Allergy Consortium Wageningen; Wageningen University and Research Centre; Wageningen The Netherlands
| | - B. J. Vlieg-Boerstra
- Department of Pediatric Pulmonology and Pediatric Allergy, and GRIAC Research Institute; Beatrix Children's Hospital; University Medical Center Groningen; University of Groningen; Groningen The Netherlands
| | - B. J. Flokstra-de Blok
- Department of General Practice, and GRIAC Research Institute; University Medical Center Groningen; University of Groningen; Groningen The Netherlands
| | - W. E. van de Weg
- Wageningen UR Plant Breeding; Wageningen University and Research Centre; Wageningen The Netherlands
- Allergy Consortium Wageningen; Wageningen University and Research Centre; Wageningen The Netherlands
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24
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Buron-Moles G, Wisniewski M, Viñas I, Teixidó N, Usall J, Droby S, Torres R. Characterizing the proteome and oxi-proteome of apple in response to a host (Penicillium expansum) and a non-host (Penicillium digitatum) pathogen. J Proteomics 2014; 114:136-51. [PMID: 25464364 DOI: 10.1016/j.jprot.2014.11.007] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Revised: 09/30/2014] [Accepted: 11/07/2014] [Indexed: 01/22/2023]
Abstract
UNLABELLED Apples are subjected to both abiotic and biotic stresses during the postharvest period, which lead to large economic losses worldwide. To obtain biochemical insights into apple defense response, we monitored the protein abundance changes (proteome), as well as the protein carbonyls (oxi-proteome) formed by reactive oxygen species (ROS) in 'Golden Smoothee' apple in response to wounding, Penicillium expansum (host) and Penicillium digitatum (non-host) pathogens with select transcriptional studies. To examine the biological relevance of the results, we described quantitative and oxidative protein changes into the gene ontology functional categories, as well as into de KEGG pathways. We identified 26 proteins that differentially changed in abundance in response to wounding, P. expansum or P. digitatum infection. While these changes showed some similarities between the apple responses and abiotic and biotic stresses, Mal d 1.03A case, other proteins as Mal d 1.03E and EF-Tu were specifically induced in response to P. digitatum infection. Using a protein carbonyl detection method based on fluorescent Bodipy, we detected and identified 27 oxidized proteins as sensitive ROS targets. These ROS target proteins were related to metabolism processes, suggesting that this process plays a leading role in apple fruit defense response against abiotic and biotic stresses. ACC oxidase and two glutamine synthetases showed the highest protein oxidation level in response to P. digitatum infection. Documenting changes in the proteome and, specifically in oxi-proteome of apple can provide information that can be used to better understand how impaired protein functions may affect apple defense mechanisms. Possible mechanisms by which these modified proteins are involved in fruit defense response are discussed. BIOLOGICAL SIGNIFICANCE Mechanical damage in apple fruits is linked annually to large economic losses due to opportunistic infection by postharvest pathogens, such as P. expansum. Despite the current use of chemical fungicides and the implementation of new alternative strategies, blue mold remains a critical disease of these stored fruits worldwide. Actual trends are focused on acquiring the knowledge of the host-pathogen interactions because it may help on finding new rational and environmentally friendly control alternatives. Despite the economic importance of some postharvest diseases, proteomics has only been applied in a few cases to study fruit-pathogen interactions. On the one hand, this is the first study that monitored changes at the proteome and oxi-proteome level in 'Golden Smoothee' apple fruits in response to P. expansum (compatible) and P. digitatum (non-host) pathogens. On the other hand, the main technological innovation of the reported research is the detection and quantification of oxidized (carbonylated) proteins to assess protein oxidative damage, avoiding the immunoblotting technique. The importance of the biological process investigated lies in the different mechanisms induced in fruit in response to P. expansum and P. digitatum. Results revealed that fruit recognizes and reacts to P. expansum in a similar manner to wounding, while its response to P. digitatum exhibits few differences in the protein profile. Documenting changes in the proteome and, specifically in oxi-proteome of apple can provide information that can be used to better understand how impaired protein functions may affect apple defense mechanisms. It also provides new biomarkers for oxidative damage mainly caused by the oxidative response occurring in fruit tissue in response to a host and a non-host pathogen.
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Affiliation(s)
- Gemma Buron-Moles
- Food Technology Department, Lleida University, XaRTA-Postharvest, Agrotecnio Center, Rovira Roure 191, 25198 Lleida, Catalonia, Spain
| | - Michael Wisniewski
- US Department of Agriculture-Agricultural Research Service (USDA-ARS), Appalachian Fruit Research Station, Wiltshire Road 2217, 25430 Kearneysville, WV, USA
| | - Inmaculada Viñas
- Food Technology Department, Lleida University, XaRTA-Postharvest, Agrotecnio Center, Rovira Roure 191, 25198 Lleida, Catalonia, Spain
| | - Neus Teixidó
- IRTA, XaRTA-Postharvest, Rovira Roure 191, 25198 Lleida, Catalonia, Spain
| | - Josep Usall
- IRTA, XaRTA-Postharvest, Rovira Roure 191, 25198 Lleida, Catalonia, Spain
| | - Samir Droby
- Department of Postharvest Science, ARO, The Volcani Center, PO Box 6, 50250 Bet Dagan, Israel
| | - Rosario Torres
- IRTA, XaRTA-Postharvest, Rovira Roure 191, 25198 Lleida, Catalonia, Spain.
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Vanblaere T, Flachowsky H, Gessler C, Broggini GAL. Molecular characterization of cisgenic lines of apple 'Gala' carrying the Rvi6 scab resistance gene. PLANT BIOTECHNOLOGY JOURNAL 2014; 12:2-9. [PMID: 23998808 DOI: 10.1111/pbi.12110] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2013] [Revised: 07/16/2013] [Accepted: 07/18/2013] [Indexed: 05/24/2023]
Abstract
Using resistance genes from a crossable donor to obtain cultivars resistant to diseases and the use of such cultivars in production appears an economically and environmentally advantageous approach. In apple, introgression of resistance genes by classical breeding results in new cultivars, while introducing cisgenes by biotechnological methods maintains the original cultivar characteristics. Recently, plants of the popular apple 'Gala' were genetically modified by inserting the apple scab resistance gene Rvi6 (formerly HcrVf2) under control of its own regulatory sequences. This gene is derived from the scab-resistant apple 'Florina' (originally from the wild apple accession Malus floribunda 821). The vector used for genetic modification allowed a postselection marker gene elimination to achieve cisgenesis. In this work, three cisgenic lines were analysed to assess copy number, integration site, expression level and resistance to apple scab. For two of these lines, a single insertion was observed and, despite a very low expression of 0.07- and 0.002-fold compared with the natural expression of 'Florina', this was sufficient to induce plant reaction and reduce fungal growth by 80% compared with the scab-susceptible 'Gala'. Similar results for resistance and expression analysis were obtained also for the third line, although it was impossible to determine the copy number and TDNA integration site-such molecular characterization is requested by the (EC) Regulation No. 1829/2003, but may become unnecessary if cisgenic crops become exempt from GMO regulation.
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Affiliation(s)
- Thalia Vanblaere
- Plant Pathology, Institute of Integrative Biology (IBZ), ETH Zurich, Zurich, Switzerland
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Salentijn EM, Esselink DG, Goryunova SV, van der Meer IM, Gilissen LJWJ, Smulders MJM. Quantitative and qualitative differences in celiac disease epitopes among durum wheat varieties identified through deep RNA-amplicon sequencing. BMC Genomics 2013; 14:905. [PMID: 24354426 PMCID: PMC3890609 DOI: 10.1186/1471-2164-14-905] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2013] [Accepted: 12/10/2013] [Indexed: 12/20/2022] Open
Abstract
Background Wheat gluten is important for the industrial quality of bread wheat (Triticum aestivum L.) and durum wheat (T. turgidum L.). Gluten proteins are also the source of immunogenic peptides that can trigger a T cell reaction in celiac disease (CD) patients, leading to inflammatory responses in the small intestine. Various peptides with three major T cell epitopes involved in CD are derived from alpha-gliadin fraction of gluten. Alpha-gliadins are encoded by a large multigene family and amino acid variation in the CD epitopes is known to influence the immunogenicity of individual gene family members. Current commercial methods of gluten detection are unable to distinguish between immunogenic and non-immunogenic CD epitope variants and thus to accurately quantify the overall CD epitope load of a given wheat variety. Such quantification is indispensable for correct selection of wheat varieties with low potential to cause CD. Results A 454 RNA-amplicon sequencing method was developed for alpha-gliadin transcripts encompassing the three major CD epitopes and their variants. The method was used to screen developing grains on plants of 61 different durum wheat cultivars and accessions. A dedicated sequence analysis pipeline returned a total of 304 unique alpha-gliadin transcripts, corresponding to a total of 171 ‘unique deduced protein fragments’ of alpha-gliadins. The numbers of these fragments obtained in each plant were used to calculate quantitative and quantitative differences between the CD epitopes expressed in the endosperm of these wheat plants. A few plants showed a lower fraction of CD epitope-encoding alpha-gliadin transcripts, but none were free of CD epitopes. Conclusions The dedicated 454 RNA-amplicon sequencing method enables 1) the grouping of wheat plants according to the genetic variation in alpha-gliadin transcripts, and 2) the screening for plants which are potentially less CD-immunogenic. The resulting alpha-gliadin sequence database will be useful as a reference in proteomics analysis regarding the immunogenic potential of mature wheat grains.
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Affiliation(s)
- Elma Mj Salentijn
- Plant Research International, Wageningen UR, P,O, Box 16, Wageningen, AA NL-6700, The Netherlands.
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Gusberti M, Gessler C, Broggini GAL. RNA-Seq analysis reveals candidate genes for ontogenic resistance in Malus-Venturia pathosystem. PLoS One 2013; 8:e78457. [PMID: 24223809 PMCID: PMC3817206 DOI: 10.1371/journal.pone.0078457] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Accepted: 09/13/2013] [Indexed: 11/18/2022] Open
Abstract
Ontogenic scab resistance in apple leaves and fruits is a horizontal resistance against the plant pathogen Venturia inaequalis and is expressed as a decrease in disease symptoms and incidence with the ageing of the leaves. Several studies at the biochemical level tried to unveil the nature of this resistance; however, no conclusive results were reported. We decided therefore to investigate the genetic origin of this phenomenon by performing a full quantitative transcriptome sequencing and comparison of young (susceptible) and old (ontogenic resistant) leaves, infected or not with the pathogen. Two time points at 72 and 96 hours post-inoculation were chosen for RNA sampling and sequencing. Comparison between the different conditions (young and old leaves, inoculated or not) should allow the identification of differentially expressed genes which may represent different induced plant defence reactions leading to ontogenic resistance or may be the cause of a constitutive (uninoculated with the pathogen) shift toward resistance in old leaves. Differentially expressed genes were then characterised for their function by homology to A. thaliana and other plant genes, particularly looking for genes involved in pathways already suspected of appertaining to ontogenic resistance in apple or other hosts, or to plant defence mechanisms in general. IN THIS WORK, FIVE CANDIDATE GENES PUTATIVELY INVOLVED IN THE ONTOGENIC RESISTANCE OF APPLE WERE IDENTIFIED: a gene encoding an "enhanced disease susceptibility 1 protein" was found to be down-regulated in both uninoculated and inoculated old leaves at 96 hpi, while the other four genes encoding proteins (metallothionein3-like protein, lipoxygenase, lipid transfer protein, and a peroxidase 3) were found to be constitutively up-regulated in inoculated and uninoculated old leaves. The modulation of the five candidate genes has been validated using the real-time quantitative PCR. Thus, ontogenic resistance may be the result of the corresponding up- and down-regulation of these genes.
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Affiliation(s)
- Michele Gusberti
- Institute of Integrative Biology Zürich, Plant Pathology Group, Swiss Federal Institute of Technology, Zürich, Switzerland
| | - Cesare Gessler
- Institute of Integrative Biology Zürich, Plant Pathology Group, Swiss Federal Institute of Technology, Zürich, Switzerland
| | - Giovanni A. L. Broggini
- Institute of Integrative Biology Zürich, Plant Pathology Group, Swiss Federal Institute of Technology, Zürich, Switzerland
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