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For: Fauteux F, Strömvik MV. Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae. BMC Plant Biol 2009;9:126. [PMID: 19843335 PMCID: PMC2770497 DOI: 10.1186/1471-2229-9-126] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2009] [Accepted: 10/20/2009] [Indexed: 05/22/2023]
Number Cited by Other Article(s)
1
Sobrino-Mengual G, Alvarez D, Twyman RM, Gerrish C, Fraser PD, Capell T, Christou P. Activation of the native PHYTOENE SYNTHASE 1 promoter by modifying near-miss cis-acting elements induces carotenoid biosynthesis in embryogenic rice callus. PLANT CELL REPORTS 2024;43:118. [PMID: 38632121 PMCID: PMC11024007 DOI: 10.1007/s00299-024-03199-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 03/13/2024] [Indexed: 04/19/2024]
2
Klajn N, Kapczyńska K, Pasikowski P, Glazińska P, Kugiel H, Kęsy J, Wojciechowski W. Regulatory Effects of ABA and GA on the Expression of Conglutin Genes and LAFL Network Genes in Yellow Lupine (Lupinus luteus L.) Seeds. Int J Mol Sci 2023;24:12380. [PMID: 37569754 PMCID: PMC10418516 DOI: 10.3390/ijms241512380] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 07/28/2023] [Accepted: 07/29/2023] [Indexed: 08/13/2023]  Open
3
Breeding Canola (Brassica napus L.) for Protein in Feed and Food. PLANTS 2021;10:plants10102220. [PMID: 34686029 PMCID: PMC8539702 DOI: 10.3390/plants10102220] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 10/03/2021] [Accepted: 10/11/2021] [Indexed: 01/12/2023]
4
Li J, Liu X, Wang Q, Sun J, He D. Genome-wide identification and analysis of cystatin family genes in Sorghum (Sorghum bicolor (L.) Moench). PeerJ 2021;9:e10617. [PMID: 33552717 PMCID: PMC7827979 DOI: 10.7717/peerj.10617] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Accepted: 11/30/2020] [Indexed: 11/20/2022]  Open
5
Singh S, Geeta R, Das S. Comparative sequence analysis across Brassicaceae, regulatory diversity in KCS5 and KCS6 homologs from Arabidopsis thaliana and Brassica juncea, and intronic fragment as a negative transcriptional regulator. Gene Expr Patterns 2020;38:119146. [PMID: 32947048 DOI: 10.1016/j.gep.2020.119146] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 08/26/2020] [Accepted: 09/08/2020] [Indexed: 11/26/2022]
6
Karikari B, Wang Z, Zhou Y, Yan W, Feng J, Zhao T. Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study. BMC PLANT BIOLOGY 2020;20:404. [PMID: 32873245 PMCID: PMC7466808 DOI: 10.1186/s12870-020-02604-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 08/16/2020] [Indexed: 05/15/2023]
7
Khan ZH, Patel R, Mehrotra S, Mehrotra R. In-silico analysis of seed storage protein gene promoters reveals differential occurrence of 7 cis-regulatory elements in monocot and 14 in dicot plants. GENE REPORTS 2019. [DOI: 10.1016/j.genrep.2019.100520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Guo ZH, Haslam RP, Michaelson LV, Yeung EC, Lung SC, Napier JA, Chye ML. The overexpression of rice ACYL-CoA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;100:1132-1147. [PMID: 31437323 DOI: 10.1111/tpj.14503] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2018] [Revised: 07/27/2019] [Accepted: 08/05/2019] [Indexed: 05/18/2023]
9
Li J, Wang K, Li G, Li Y, Zhang Y, Liu Z, Ye X, Xia X, He Z, Cao S. Dissecting conserved cis-regulatory modules of Glu-1 promoters which confer the highly active endosperm-specific expression via stable wheat transformation. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.cj.2018.08.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
10
Analysis of genes encoding seed storage proteins (SSPs) in chickpea (Cicer arietinum L.) reveals co-expressing transcription factors and a seed-specific promoter. Funct Integr Genomics 2018;19:373-390. [PMID: 30560463 DOI: 10.1007/s10142-018-0650-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Revised: 11/22/2018] [Accepted: 11/26/2018] [Indexed: 12/27/2022]
11
Zhang Z, Zou X, Huang Z, Fan S, Qun G, Liu A, Gong J, Li J, Gong W, Shi Y, Fan L, Zhang Z, Liu R, Jiang X, Lei K, Shang H, Xu A, Yuan Y. Genome-wide identification and analysis of the evolution and expression patterns of the GATA transcription factors in three species of Gossypium genus. Gene 2018;680:72-83. [PMID: 30253181 DOI: 10.1016/j.gene.2018.09.039] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 08/28/2018] [Accepted: 09/21/2018] [Indexed: 12/30/2022]
12
Quintero FOC, Pinto LG, Barsalobres-Cavallari CF, Arcuri MDLC, Pino LE, Peres LEP, Maluf MP, Maia IG. Identification of a seed maturation protein gene from Coffea arabica (CaSMP) and analysis of its promoter activity in tomato. PLANT CELL REPORTS 2018;37:1257-1268. [PMID: 29947954 DOI: 10.1007/s00299-018-2310-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 06/04/2018] [Indexed: 06/08/2023]
13
Zou X, Zhen Z, Ge Q, Fan S, Liu A, Gong W, Li J, Gong J, Shi Y, Wang Y, Liu R, Duan L, Lei K, Zhang Q, Jiang X, Zhang S, Jia T, Zhang L, Shang H, Yuan Y. Genome-wide identification and analysis of the evolution and expression patterns of the cellulose synthase gene superfamily in Gossypium species. Gene 2017;646:28-38. [PMID: 29278771 DOI: 10.1016/j.gene.2017.12.043] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Revised: 12/03/2017] [Accepted: 12/20/2017] [Indexed: 12/30/2022]
14
Yuan J, Chen S, Jiao W, Wang L, Wang L, Ye W, Lu J, Hong D, You S, Cheng Z, Yang DL, Chen ZJ. Both maternally and paternally imprinted genes regulate seed development in rice. THE NEW PHYTOLOGIST 2017;216:373-387. [PMID: 28295376 DOI: 10.1111/nph.14510] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Accepted: 02/01/2017] [Indexed: 05/20/2023]
15
Holme IB, Wendt T, Gil-Humanes J, Deleuran LC, Starker CG, Voytas DF, Brinch-Pedersen H. Evaluation of the mature grain phytase candidate HvPAPhy_a gene in barley (Hordeum vulgare L.) using CRISPR/Cas9 and TALENs. PLANT MOLECULAR BIOLOGY 2017;95:111-121. [PMID: 28755320 DOI: 10.1007/s11103-017-0640-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Accepted: 07/20/2017] [Indexed: 05/05/2023]
16
Albornos L, Martín I, Labrador E, Dopico B. Three members of Medicago truncatula ST family are ubiquitous during development and modulated by nutritional status (MtST1) and dehydration (MtST2 and MtST3). BMC PLANT BIOLOGY 2017;17:117. [PMID: 28693485 PMCID: PMC5504553 DOI: 10.1186/s12870-017-1061-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Accepted: 06/22/2017] [Indexed: 05/30/2023]
17
Sun F, Liu X, Wei Q, Liu J, Yang T, Jia L, Wang Y, Yang G, He G. Functional Characterization of TaFUSCA3, a B3-Superfamily Transcription Factor Gene in the Wheat. FRONTIERS IN PLANT SCIENCE 2017;8:1133. [PMID: 28702045 PMCID: PMC5487486 DOI: 10.3389/fpls.2017.01133] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 06/13/2017] [Indexed: 05/19/2023]
18
Herath V. Small family, big impact: In silico analysis of DREB2 transcription factor family in rice. Comput Biol Chem 2016;65:128-139. [PMID: 27816829 DOI: 10.1016/j.compbiolchem.2016.10.012] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Revised: 09/10/2016] [Accepted: 10/25/2016] [Indexed: 01/15/2023]
19
Identification of drought-induced transcription factors in Sorghum bicolor using GO term semantic similarity. Cell Mol Biol Lett 2016. [PMID: 26204390 DOI: 10.2478/s11658-014-0223-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
20
Zolotarov Y, Strömvik M. De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes. PLoS One 2015;10:e0129016. [PMID: 26114291 PMCID: PMC4482647 DOI: 10.1371/journal.pone.0129016] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2015] [Accepted: 05/04/2015] [Indexed: 12/03/2022]  Open
21
Makai S, Éva C, Tamás L, Juhász A. Multiple elements controlling the expression of wheat high molecular weight glutenin paralogs. Funct Integr Genomics 2015;15:661-72. [PMID: 25893709 DOI: 10.1007/s10142-015-0441-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Revised: 03/24/2015] [Accepted: 04/06/2015] [Indexed: 01/23/2023]
22
Sohrabi M, Zebarjadi A, Najaphy A, Kahrizi D. Isolation and sequence analysis of napin seed specific promoter from Iranian Rapeseed (Brassica napus L.). Gene 2015;563:160-4. [PMID: 25797503 DOI: 10.1016/j.gene.2015.03.040] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Revised: 02/06/2015] [Accepted: 03/13/2015] [Indexed: 10/23/2022]
23
Yoshino M, Tsutsumi K, Kanazawa A. Profiles of embryonic nuclear protein binding to the proximal promoter region of the soybean β-conglycinin α subunit gene. PLANT BIOLOGY (STUTTGART, GERMANY) 2015;17:147-52. [PMID: 24943483 DOI: 10.1111/plb.12218] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2014] [Accepted: 05/02/2014] [Indexed: 06/03/2023]
24
Ravel C, Fiquet S, Boudet J, Dardevet M, Vincent J, Merlino M, Michard R, Martre P. Conserved cis-regulatory modules in promoters of genes encoding wheat high-molecular-weight glutenin subunits. FRONTIERS IN PLANT SCIENCE 2014;5:621. [PMID: 25429295 PMCID: PMC4228979 DOI: 10.3389/fpls.2014.00621] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Accepted: 10/21/2014] [Indexed: 05/19/2023]
25
Dutt M, Dhekney SA, Soriano L, Kandel R, Grosser JW. Temporal and spatial control of gene expression in horticultural crops. HORTICULTURE RESEARCH 2014;1:14047. [PMID: 26504550 PMCID: PMC4596326 DOI: 10.1038/hortres.2014.47] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Revised: 07/19/2014] [Accepted: 08/06/2014] [Indexed: 05/05/2023]
26
Fujiwara K, Cabanos C, Toyota K, Kobayashi Y, Maruyama N. Differential expression and elution behavior of basic 7S globulin among cultivars under hot water treatment of soybean seeds. J Biosci Bioeng 2014;117:742-8. [PMID: 24331980 DOI: 10.1016/j.jbiosc.2013.11.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Revised: 10/28/2013] [Accepted: 11/03/2013] [Indexed: 01/19/2023]
27
Sunkara S, Bhatnagar-Mathur P, Sharma KK. Isolation and functional characterization of a novel seed-specific promoter region from peanut. Appl Biochem Biotechnol 2014;172:325-39. [PMID: 24078220 DOI: 10.1007/s12010-013-0482-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2013] [Accepted: 08/26/2013] [Indexed: 10/26/2022]
28
Plessis A, Ravel C, Bordes J, Balfourier F, Martre P. Association study of wheat grain protein composition reveals that gliadin and glutenin composition are trans-regulated by different chromosome regions. JOURNAL OF EXPERIMENTAL BOTANY 2013;64:3627-44. [PMID: 23881399 PMCID: PMC3745720 DOI: 10.1093/jxb/ert188] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
29
Sang Y, Millwood RJ, Neal Stewart C. Gene use restriction technologies for transgenic plant bioconfinement. PLANT BIOTECHNOLOGY JOURNAL 2013;11:649-658. [PMID: 23730743 DOI: 10.1111/pbi.12084] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Revised: 04/03/2013] [Accepted: 04/09/2013] [Indexed: 06/02/2023]
30
Wang K, Zhang X, Zhao Y, Chen F, Xia G. Structure, variation and expression analysis of glutenin gene promoters from Triticum aestivum cultivar Chinese Spring shows the distal region of promoter 1Bx7 is key regulatory sequence. Gene 2013;527:484-90. [PMID: 23850729 DOI: 10.1016/j.gene.2013.06.068] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2013] [Revised: 06/19/2013] [Accepted: 06/20/2013] [Indexed: 10/26/2022]
31
Hosseini P, Ovcharenko I, Matthews BF. Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites. PLANT METHODS 2013;9:12. [PMID: 23578135 PMCID: PMC3639912 DOI: 10.1186/1746-4811-9-12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Accepted: 03/28/2013] [Indexed: 05/07/2023]
32
Egelkrout E, Rajan V, Howard JA. Overproduction of recombinant proteins in plants. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2012;184:83-101. [PMID: 22284713 DOI: 10.1016/j.plantsci.2011.12.005] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2011] [Revised: 12/06/2011] [Accepted: 12/09/2011] [Indexed: 05/21/2023]
33
Bhattacharya A, Ramos ML, Faustinelli P, Ozias-Akins P. Reporter Gene Expression Patterns Regulated by an Ara h 2 Promoter Differ in Homologous Versus Heterologous Systems1. ACTA ACUST UNITED AC 2012. [DOI: 10.3146/ps11-16.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
34
Juhász A, Makai S, Sebestyén E, Tamás L, Balázs E. Role of conserved non-coding regulatory elements in LMW glutenin gene expression. PLoS One 2011;6:e29501. [PMID: 22242127 PMCID: PMC3248431 DOI: 10.1371/journal.pone.0029501] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2011] [Accepted: 11/29/2011] [Indexed: 02/02/2023]  Open
35
Mehrotra R, Gupta G, Sethi R, Bhalothia P, Kumar N, Mehrotra S. Designer promoter: an artwork of cis engineering. PLANT MOLECULAR BIOLOGY 2011;75:527-36. [PMID: 21327513 DOI: 10.1007/s11103-011-9755-3] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2011] [Accepted: 02/02/2011] [Indexed: 05/20/2023]
36
Gene networks in the synthesis and deposition of protein polymers during grain development of wheat. Funct Integr Genomics 2010;11:23-35. [PMID: 20960020 DOI: 10.1007/s10142-010-0196-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2010] [Revised: 10/06/2010] [Accepted: 10/07/2010] [Indexed: 02/04/2023]
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