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Sushko I, Novotarskyi S, Körner R, Pandey AK, Cherkasov A, Li J, Gramatica P, Hansen K, Schroeter T, Müller KR, Xi L, Liu H, Yao X, Öberg T, Hormozdiari F, Dao P, Sahinalp C, Todeschini R, Polishchuk P, Artemenko A, Kuz’min V, Martin TM, Young DM, Fourches D, Muratov E, Tropsha A, Baskin I, Horvath D, Marcou G, Muller C, Varnek A, Prokopenko VV, Tetko IV. Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set. J Chem Inf Model 2010; 50:2094-111. [DOI: 10.1021/ci100253r] [Citation(s) in RCA: 172] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Iurii Sushko
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Sergii Novotarskyi
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Robert Körner
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Anil Kumar Pandey
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Artem Cherkasov
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Jiazhong Li
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Paola Gramatica
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Katja Hansen
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Timon Schroeter
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Klaus-Robert Müller
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Lili Xi
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Huanxiang Liu
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Xiaojun Yao
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Tomas Öberg
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Farhad Hormozdiari
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Phuong Dao
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Cenk Sahinalp
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Roberto Todeschini
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Pavel Polishchuk
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Anatoliy Artemenko
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Victor Kuz’min
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Todd M. Martin
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Douglas M. Young
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Denis Fourches
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Eugene Muratov
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Alexander Tropsha
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Igor Baskin
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Dragos Horvath
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Gilles Marcou
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Christophe Muller
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Alexander Varnek
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Volodymyr V. Prokopenko
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
| | - Igor V. Tetko
- Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen—German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany, University of British Columbia, Vancouver Prostate Centre, 2660 Oak str., Vancouver, BC, V6H 3Z6, Canada, QSAR Research Unit in Environmental Chemistry and Ecotoxicology, Department of Structural and Functional Biology, University of Insubria, Via Dunant 3, Varese 21100, Italy, Machine Learning Department, Technical
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