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For: Jung KH, Gho HJ, Giong HK, Chandran AKN, Nguyen QN, Choi H, Zhang T, Wang W, Kim JH, Choi HK, An G. Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data. Rice (N Y) 2013;6:19. [PMID: 24280533 PMCID: PMC4883688 DOI: 10.1186/1939-8433-6-19] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Accepted: 08/07/2013] [Indexed: 05/07/2023]
Number Cited by Other Article(s)
1
Sun Y, Zhao H, Chen Z, Chen H, Li B, Wang C, Lin X, Cai Y, Zhou D, Ouyang L, Zhu C, He H, Peng X. Comparison of the Phenotypic Performance, Molecular Diversity, and Proteomics in Transgenic Rice. PLANTS (BASEL, SWITZERLAND) 2022;12:156. [PMID: 36616286 PMCID: PMC9824520 DOI: 10.3390/plants12010156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/16/2022] [Accepted: 12/22/2022] [Indexed: 06/17/2023]
2
Chen K, Shi Z, Zhang S, Wang Y, Xia X, Jiang Y, Gull S, Chen L, Guo H, Wu T, Zhang H, Liu J, Kong W. Methylation and Expression of Rice NLR Genes after Low Temperature Stress. Gene 2022;845:146830. [PMID: 35995119 DOI: 10.1016/j.gene.2022.146830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 07/17/2022] [Accepted: 08/16/2022] [Indexed: 11/04/2022]
3
Pang H, Chen Q, Li Y, Wang Z, Wu L, Yang Q, Zheng X. Comparative analysis of the transcriptomes of two rice subspecies during domestication. Sci Rep 2021;11:3660. [PMID: 33574456 PMCID: PMC7878495 DOI: 10.1038/s41598-021-83162-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2020] [Accepted: 01/28/2021] [Indexed: 11/11/2022]  Open
4
Tian D, Chen Z, Lin Y, Chen Z, Bui KT, Wang Z, Wang F. Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice. RICE (NEW YORK, N.Y.) 2020;13:81. [PMID: 33306159 PMCID: PMC7732884 DOI: 10.1186/s12284-020-00439-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 11/13/2020] [Indexed: 06/12/2023]
5
Liu Q, Yang X, Tzin V, Peng Y, Romeis J, Li Y. Plant breeding involving genetic engineering does not result in unacceptable unintended effects in rice relative to conventional cross-breeding. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;103:2236-2249. [PMID: 32593184 PMCID: PMC7540705 DOI: 10.1111/tpj.14895] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 05/27/2020] [Accepted: 06/02/2020] [Indexed: 05/09/2023]
6
Campbell MT, Du Q, Liu K, Sharma S, Zhang C, Walia H. Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa). BMC Genomics 2020;21:394. [PMID: 32513103 PMCID: PMC7278148 DOI: 10.1186/s12864-020-06786-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 05/19/2020] [Indexed: 01/24/2023]  Open
7
Zhao N, Sheng M, Zhao J, Ma X, Wei Q, Song Q, Zhang K, Xu W, Sun C, Liu F, Su Z. Over-Expression of HDA710 Delays Leaf Senescence in Rice (Oryza sativa L.). Front Bioeng Biotechnol 2020;8:471. [PMID: 32509751 PMCID: PMC7248171 DOI: 10.3389/fbioe.2020.00471] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2020] [Accepted: 04/22/2020] [Indexed: 11/13/2022]  Open
8
Zhou Q, Fu H, Yang D, Ye C, Zhu S, Lin J, Ye W, Ji G, Ye X, Wu X, Li QQ. Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;98:260-276. [PMID: 30570805 DOI: 10.1111/tpj.14209] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 11/26/2018] [Accepted: 12/06/2018] [Indexed: 05/25/2023]
9
Chen J, Hu L, Sun L, Lin B, Huang K, Zhuo K, Liao J. A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism. MOLECULAR PLANT PATHOLOGY 2018;19:1942-1955. [PMID: 29485753 PMCID: PMC6638000 DOI: 10.1111/mpp.12671] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 02/25/2018] [Accepted: 02/26/2018] [Indexed: 05/04/2023]
10
Chandran AKN, Bhatnagar N, Yoo YH, Moon S, Park SA, Hong WJ, Kim BG, An G, Jung KH. Meta-expression analysis of unannotated genes in rice and approaches for network construction to suggest the probable roles. PLANT MOLECULAR BIOLOGY 2018;96:17-34. [PMID: 29086189 DOI: 10.1007/s11103-017-0675-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Accepted: 10/22/2017] [Indexed: 06/07/2023]
11
De Schutter K, Tsaneva M, Kulkarni SR, Rougé P, Vandepoele K, Van Damme EJM. Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa). RICE (NEW YORK, N.Y.) 2017;10:26. [PMID: 28560587 PMCID: PMC5449364 DOI: 10.1186/s12284-017-0164-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 05/16/2017] [Indexed: 05/05/2023]
12
Zhang J, Chen K, Pang Y, Naveed SA, Zhao X, Wang X, Wang Y, Dingkuhn M, Pasuquin J, Li Z, Xu J. QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study. BMC Genomics 2017;18:828. [PMID: 29078746 PMCID: PMC5658907 DOI: 10.1186/s12864-017-4221-5] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 10/17/2017] [Indexed: 03/28/2024]  Open
13
Horiuchi Y, Harushima Y, Fujisawa H, Mochizuki T, Fujita M, Ohyanagi H, Kurata N. Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes. BMC Genomics 2015;16:1099. [PMID: 26699716 PMCID: PMC4690246 DOI: 10.1186/s12864-015-2319-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2015] [Accepted: 12/15/2015] [Indexed: 11/10/2022]  Open
14
Giong HK, Moon S, Jung KH. A systematic view of the rice calcineurin B-like protein interacting protein kinase family. Genes Genomics 2014. [DOI: 10.1007/s13258-014-0229-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Thavamanikumar S, Southerton S, Thumma B. RNA-Seq using two populations reveals genes and alleles controlling wood traits and growth in Eucalyptus nitens. PLoS One 2014;9:e101104. [PMID: 24967893 PMCID: PMC4072731 DOI: 10.1371/journal.pone.0101104] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2014] [Accepted: 06/02/2014] [Indexed: 11/17/2022]  Open
16
Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Nat Genet 2014;46:714-21. [PMID: 24908251 DOI: 10.1038/ng.3007] [Citation(s) in RCA: 433] [Impact Index Per Article: 43.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Accepted: 05/15/2014] [Indexed: 12/21/2022]
17
Lim JH, Yang HJ, Jung KH, Yoo SC, Paek NC. Quantitative trait locus mapping and candidate gene analysis for plant architecture traits using whole genome re-sequencing in rice. Mol Cells 2014;37:149-60. [PMID: 24599000 PMCID: PMC3935628 DOI: 10.14348/molcells.2014.2336] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2013] [Revised: 12/21/2013] [Accepted: 12/23/2013] [Indexed: 11/27/2022]  Open
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