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Meradji M, Bachtarzi N, Mora D, Kharroub K. Characterization of Lactic Acid Bacteria Strains Isolated from Algerian Honeybee and Honey and Exploration of Their Potential Probiotic and Functional Features for Human Use. Foods 2023; 12:2312. [PMID: 37372522 DOI: 10.3390/foods12122312] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 05/27/2023] [Accepted: 06/06/2023] [Indexed: 06/29/2023] Open
Abstract
Using culture enrichment methods, 100 strains of bacilli of lactic acid bacteria (LAB) were isolated from honeybee Apis mellifera intermissa and fresh honey, collected from apiaries located in the north-east of Algeria. Amongst all of the isolated LAB, 19 selected strains were closely affiliated to four species-Fructobacillus fructosus (10), Apilactobacillus kunkeei (5), Lactobacillus kimbladii and/or Lactobacillus kullabergensis (4)-using phylogenetic and phenotypic approaches. The in vitro probiotic characteristics (simulated gastrointestinal fluids tolerance, autoaggregation and hydrophobicity abilities, antimicrobial activity and cholesterol reduction) and safety properties (hemolytic activity, antibiotic resistance and absence of biogenic amines) were evaluated. The results indicated that some strains showed promising potential probiotic properties. In addition, neither hemolytic activity nor biogenic amines were produced. The carbohydrate fermentation test (API 50 CHL) revealed that the strains could efficiently use a broad range of carbohydrates; additionally, four strains belonging to Apilactobacillus kunkeei and Fructobacillus fructosus were found to be exopolysaccharides (EPS) producers. This study demonstrates the honeybee Apis mellifera intermissa and one of her products as a reservoir for novel LAB with potential probiotic features, suggesting suitability for promoting host health.
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Affiliation(s)
- Meriem Meradji
- Laboratoire de Recherche Biotechnologie et Qualité des Aliments (BIOQUAL), Institut de la Nutrition, de l'Alimentation et des Technologies Agro-Alimentaires (INATAA), Université Frères Mentouri Constantine 1 (UFMC1), Route de Ain El Bey, Constantine 25000, Algeria
| | - Nadia Bachtarzi
- Laboratoire de Recherche Biotechnologie et Qualité des Aliments (BIOQUAL), Institut de la Nutrition, de l'Alimentation et des Technologies Agro-Alimentaires (INATAA), Université Frères Mentouri Constantine 1 (UFMC1), Route de Ain El Bey, Constantine 25000, Algeria
| | - Diego Mora
- Department of Food Environmental and Nutritional Sciences (DeFENS), University of Milan, 20122 Milan, Italy
| | - Karima Kharroub
- Laboratoire de Recherche Biotechnologie et Qualité des Aliments (BIOQUAL), Institut de la Nutrition, de l'Alimentation et des Technologies Agro-Alimentaires (INATAA), Université Frères Mentouri Constantine 1 (UFMC1), Route de Ain El Bey, Constantine 25000, Algeria
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Adhesion and Anti-Adhesion Abilities of Potentially Probiotic Lactic Acid Bacteria and Biofilm Eradication of Honeybee ( Apis mellifera L.) Pathogens. Molecules 2022; 27:molecules27248945. [PMID: 36558073 PMCID: PMC9786635 DOI: 10.3390/molecules27248945] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 12/11/2022] [Accepted: 12/12/2022] [Indexed: 12/23/2022] Open
Abstract
Lactic acid bacteria (LAB) naturally inhabits the organisms of honeybees and can exhibit adhesive properties that protect these insects against various pathogenic microorganisms. Thus, cell surface (auto-aggregation, co-aggregation, hydrophobicity) and adhesive properties of LAB to two abiotic (polystyrene and glass) and four biotic (collagen, gelatin, mucus, and intestinal Caco-2 cells) surfaces were investigated. Additionally, anti-adhesion activity and the eradication of honeybee pathogen biofilms by LAB metabolites (culture supernatants) were determined. The highest hydrophobicity was demonstrated by Pediococcus pentosaceus 19/1 (63.16%) and auto-aggregation by Lactiplantibacillus plantarum 18/1 (71.91%). All LAB showed a broad spectrum of adhesion to the tested surfaces. The strongest adhesion was noted for glass. The ability to co-aggregate with pathogens was tested for the three most potently adherent LAB strains. All showed various levels of co-aggregation depending on the pathogen. The eradication of mature pathogen biofilms by LAB metabolites appeared to be weaker than their anti-adhesive properties against pathogens. The most potent anti-adhesion activity was observed for L. plantarum 18/1 (98.80%) against Paenibacillus apiarius DSM 5582, while the strongest biofilm eradication was demonstrated by the same LAB strain against Melissococcus plutonius DSM 29964 (19.87%). The adhesive and anti-adhesive activity demonstrated by LAB can contribute to increasing the viability of honeybee colonies and improving the conditions in apiaries.
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Daisley BA, Reid G. BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities. mSystems 2021; 6:e00082-21. [PMID: 33824193 PMCID: PMC8546966 DOI: 10.1128/msystems.00082-21] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 03/08/2021] [Indexed: 01/04/2023] Open
Abstract
High-throughput 16S rRNA gene sequencing technologies have robust potential to improve our understanding of bee (Hymenoptera: Apoidea)-associated microbial communities and their impact on hive health and disease. Despite recent computation algorithms now permitting exact inferencing of high-resolution exact amplicon sequence variants (ASVs), the taxonomic classification of these ASVs remains a challenge due to inadequate reference databases. To address this, we assemble a comprehensive data set of all publicly available bee-associated 16S rRNA gene sequences, systematically annotate poorly resolved identities via inclusion of 618 placeholder labels for uncultivated microbial dark matter, and correct for phylogenetic inconsistencies using a complementary set of distance-based and maximum likelihood correction strategies. To benchmark the resultant database (BEExact), we compare performance against all existing reference databases in silico using a variety of classifier algorithms to produce probabilistic confidence scores. We also validate realistic classification rates on an independent set of ∼234 million short-read sequences derived from 32 studies encompassing 50 different bee types (36 eusocial and 14 solitary). Species-level classification rates on short-read ASVs range from 80 to 90% using BEExact (with ∼20% due to "bxid" placeholder names), whereas only ∼30% at best can be resolved with current universal databases. A series of data-driven recommendations are developed for future studies. We conclude that BEExact (https://github.com/bdaisley/BEExact) enables accurate and standardized microbiota profiling across a broad range of bee species-two factors of key importance to reproducibility and meaningful knowledge exchange within the scientific community that together, can enhance the overall utility and ecological relevance of routine 16S rRNA gene-based sequencing endeavors.IMPORTANCE The failure of current universal taxonomic databases to support the rapidly expanding field of bee microbiota research has led to many investigators relying on "in-house" reference sets or manual classification of sequence reads (usually based on BLAST searches), often with vague identity thresholds and subjective taxonomy choices. This time-consuming, error- and bias-prone process lacks standardization, cripples the potential for comparative cross-study analysis, and in many cases is likely to incorrectly sway study conclusions. BEExact is structured on and leverages several complementary bioinformatic techniques to enable refined inference of bee host-associated microbial communities without any other methodological modifications necessary. It also bridges the gap between current practical outcomes (i.e., phylotype-to-genus level constraints with 97% operational taxonomic units [OTUs]) and the theoretical resolution (i.e., species-to-strain level classification with 100% ASVs) attainable in future microbiota investigations. Other niche habitats could also likely benefit from customized database curation via implementation of the novel approaches introduced in this study.
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Affiliation(s)
- Brendan A Daisley
- Department of Microbiology & Immunology, The University of Western Ontario, London, Ontario, Canada
- Canadian Centre for Human Microbiome and Probiotics Research, London, Ontario, Canada
| | - Gregor Reid
- Department of Microbiology & Immunology, The University of Western Ontario, London, Ontario, Canada
- Canadian Centre for Human Microbiome and Probiotics Research, London, Ontario, Canada
- Department of Surgery, Schulich School of Medicine, London, Ontario, Canada
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Iorizzo M, Lombardi SJ, Ganassi S, Testa B, Ianiro M, Letizia F, Succi M, Tremonte P, Vergalito F, Cozzolino A, Sorrentino E, Coppola R, Petrarca S, Mancini M, De Cristofaro A. Antagonistic Activity against Ascosphaera apis and Functional Properties of Lactobacillus kunkeei Strains. Antibiotics (Basel) 2020; 9:E262. [PMID: 32443465 PMCID: PMC7277644 DOI: 10.3390/antibiotics9050262] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 05/15/2020] [Accepted: 05/17/2020] [Indexed: 02/07/2023] Open
Abstract
: Lactic acid bacteria (LAB) are an important group of honeybee gut microbiota. These bacteria are involved in food digestion, stimulate the immune system, and may antagonize undesirable microorganisms in the gastrointestinal tract. Lactobacillus kunkeei is a fructophilic lactic acid bacterium (FLAB) most frequently found in the gastrointestinal tracts of honeybees. Ascosphaera apis is an important pathogenic fungus of honeybee larvae; it can colonize the intestine, especially in conditions of nutritional or environmental stress that cause microbial dysbiosis. In this work, some functional properties of nine selected L. kunkeei strains were evaluated. The study focused on the antifungal activity of these strains against A. apis DSM 3116, using different matrices: cell lysate, broth culture, cell-free supernatant, and cell pellet. The cell lysate showed the highest antifungal activity. Moreover, the strains were shown to possess good cell-surface properties (hydrophobicity, auto-aggregation, and biofilm production) and a good resistance to high sugar concentrations. These L. kunkeei strains were demonstrated to be functional for use in "probiotic syrup", useful to restore the symbiotic communities of the intestine in case of dysbiosis and to exert a prophylactic action against A. apis.
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Affiliation(s)
- Massimo Iorizzo
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Silvia Jane Lombardi
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Sonia Ganassi
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Bruno Testa
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Mario Ianiro
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Francesco Letizia
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Mariantonietta Succi
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Patrizio Tremonte
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Franca Vergalito
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Autilia Cozzolino
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Elena Sorrentino
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Raffaele Coppola
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Sonia Petrarca
- CONAPROA, Consorzio Nazionale Produttori Apistici, 86100 Campobasso, Italy;
| | - Massimo Mancini
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
| | - Antonio De Cristofaro
- Department of Agriculture, Environmental and Food Sciences, University of Molise, 86100 Campobasso, Italy; (M.I.); (S.J.L.); (S.G.); (M.I.); (F.L.); (M.S.); (P.T.); (F.V.); (A.C.); (E.S.); (R.C.); (M.M.); (A.D.C.)
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Filannino P, Di Cagno R, Tlais AZA, Cantatore V, Gobbetti M. Fructose-rich niches traced the evolution of lactic acid bacteria toward fructophilic species. Crit Rev Microbiol 2019; 45:65-81. [PMID: 30663917 DOI: 10.1080/1040841x.2018.1543649] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Fructophilic lactic acid bacteria (FLAB) are found in fructose-rich habitats associated with flowers, fruits, fermented foods, and the gastrointestinal tract of several insects having a fructose-based diet. FLAB are heterofermentative lactobacilli that prefer fructose instead of glucose as carbon source, although additional electron acceptor substrates (e.g. oxygen) remarkably enhance their growth on glucose. As a newly discovered bacterial group, FLAB are gaining increasing interest. In this review, the ecological context in which these bacteria exist and evolve was resumed. The wide frequency of isolation of FLAB from fructose feeding insects has been deepened to reveal their ecological significance. Genomic, metabolic data, reductive evolution, and niche specialization of the main FLAB species have been discussed. Findings to date acquired are consistent with a metabolic model in which FLAB display a reliance on environmental niches and the degree of host specificity. In light of FLAB proximity to lactic acid bacteria generally considered to be safe, and due to their peculiar metabolic traits, FLAB may be successfully exploited in food and pharmaceutical applications.
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Affiliation(s)
- Pasquale Filannino
- a Department of Soil, Plant and Food Science , University of Bari Aldo Moro , Bari , Italy
| | - Raffaella Di Cagno
- b Faculty of Science and Technology , Libera Università di Bolzano , Bolzano , Italy
| | | | - Vincenzo Cantatore
- a Department of Soil, Plant and Food Science , University of Bari Aldo Moro , Bari , Italy
| | - Marco Gobbetti
- b Faculty of Science and Technology , Libera Università di Bolzano , Bolzano , Italy
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Anderson KE, Ricigliano VA, Mott BM, Copeland DC, Floyd AS, Maes P. The queen's gut refines with age: longevity phenotypes in a social insect model. MICROBIOME 2018; 6:108. [PMID: 29914555 PMCID: PMC6006926 DOI: 10.1186/s40168-018-0489-1] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Accepted: 05/29/2018] [Indexed: 05/10/2023]
Abstract
BACKGROUND In social insects, identical genotypes can show extreme lifespan variation providing a unique perspective on age-associated microbial succession. In honey bees, short- and long-lived host phenotypes are polarized by a suite of age-associated factors including hormones, nutrition, immune senescence, and oxidative stress. Similar to other model organisms, the aging gut microbiota of short-lived (worker) honey bees accrue Proteobacteria and are depleted of Lactobacillus and Bifidobacterium, consistent with a suite of host senescence markers. In contrast, long-lived (queen) honey bees maintain youthful cellular function with much lower expression of oxidative stress genes, suggesting a very different host environment for age-associated microbial succession. RESULTS We sequenced the microbiota of 63 honey bee queens exploring two chronological ages and four alimentary tract niches. To control for genetic and environmental variation, we quantified carbonyl accumulation in queen fat body tissue as a proxy for biological aging. We compared our results to the age-specific microbial succession of worker guts. Accounting for queen source variation, two or more bacterial species per niche differed significantly by queen age. Biological aging in queens was correlated with microbiota composition highlighting the relationship of microbiota with oxidative stress. Queens and workers shared many major gut bacterial species, but differ markedly in community structure and age succession. In stark contrast to aging workers, carbonyl accumulation in queens was significantly associated with increased Lactobacillus and Bifidobacterium and depletion of various Proteobacteria. CONCLUSIONS We present a model system linking changes in gut microbiota to diet and longevity, two of the most confounding variables in human microbiota research. The pattern of age-associated succession in the queen microbiota is largely the reverse of that demonstrated for workers. The guts of short-lived worker phenotypes are progressively dominated by three major Proteobacteria, but these same species were sparse or significantly depleted in long-lived queen phenotypes. More broadly, age-related changes in the honey bee microbiota reflect the regulatory anatomy of reproductive host metabolism. Our synthesis suggests that the evolution of colony-level reproductive physiology formed the context for host-microbial interactions and age-related succession of honey bee microbiota.
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Affiliation(s)
- Kirk E. Anderson
- USDA-ARS Carl Hayden Bee Research Center, 2000 E. Allen Rd, Tucson, AZ 85719 USA
- Department of Entomology and Center for Insect Science, University of Arizona, Tucson, AZ 85721 USA
| | | | - Brendon M. Mott
- USDA-ARS Carl Hayden Bee Research Center, 2000 E. Allen Rd, Tucson, AZ 85719 USA
| | - Duan C. Copeland
- Department of Microbiology, School of Animal & Comparative Biomedical Sciences, University of Arizona, Tucson, AZ 85721 USA
| | - Amy S. Floyd
- Department of Entomology and Center for Insect Science, University of Arizona, Tucson, AZ 85721 USA
| | - Patrick Maes
- Department of Entomology and Center for Insect Science, University of Arizona, Tucson, AZ 85721 USA
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Berríos P, Fuentes JA, Salas D, Carreño A, Aldea P, Fernández F, Trombert AN. Inhibitory effect of biofilm-forming Lactobacillus kunkeei strains against virulent Pseudomonas aeruginosa in vitro and in honeycomb moth (Galleria mellonella) infection model. Benef Microbes 2017; 9:257-268. [PMID: 29124967 DOI: 10.3920/bm2017.0048] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Biofilms correspond to complex communities of microorganisms embedded in an extracellular polymeric matrix. Biofilm lifestyle predominates in Pseudomonas aeruginosa, an opportunistic Gram negative pathogen responsible for a wide spectrum of infections in humans, plants and animals. In this context, anti-biofilm can be considered a key strategy to control P. aeruginosa infections, thereby more research in the field is required. On the other hand, Lactobacillus species have been described as beneficial due to their anti-biofilm properties and their consequent effect against a wide spectrum of pathogens. In fact, biofilm-forming Lactobacilli seem to be more efficient than their planktonic counterpart to antagonise pathogenic bacteria. In this work, we demonstrated that Lactobacillus kunkeei, a novel Lactobacillus species isolated from honeybee guts, can form biofilms in vitro. In addition, the L. kunkeei biofilm can, in turn, inhibit the formation of P. aeruginosa biofilms. Finally, we found that L. kunkeei strains attenuate infection of P. aeruginosa in the Galleria mellonella model, presumably by affecting P. aeruginosa biofilm formation and/or their stability. Since L. kunkeei presents characteristics of a probiotic, this work provides evidence arguing that the use of this Lactobacillus species in both animals (including insects) and humans could contribute to impair P. aeruginosa biofilm formation.
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Affiliation(s)
- P Berríos
- 1 Escuela de Biotecnología, Facultad de Ciencias, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago 8580745, Chile
| | - J A Fuentes
- 2 Laboratorio de Genética y Patogénesis Bacteriana, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Av. República 217, Santiago 8370146, Chile
| | - D Salas
- 3 Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago 8580745, Chile
| | - A Carreño
- 4 Center of Applied Nanosciences (CANS), Universidad Andres Bello, Ave. República 275, Santiago 8370146, Chile.,5 Núcleo Milenio de Ingeniería Molecular para Catálisis y Biosensores (MECB), ICM, Av. República 275, Santiago 8370146, Chile
| | - P Aldea
- 6 CEAPI Mayor, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago 8580745, Chile
| | - F Fernández
- 3 Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago 8580745, Chile
| | - A N Trombert
- 3 Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago 8580745, Chile
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Vasileva T, Bivolarski V, Michailova G, Salim A, Rabadjiev Y, Ivanova I, Iliev I. Glucansucrases produced by fructophilic lactic acid bacteria Lactobacillus kunkeei H3 and H25 isolated from honeybees. J Basic Microbiol 2016; 57:68-77. [PMID: 27633178 DOI: 10.1002/jobm.201600332] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2016] [Accepted: 08/27/2016] [Indexed: 11/08/2022]
Abstract
Twenty fructophilic isolates from the stomachs of honeybee Apis mellifera ligustica from the region of Plovdiv, Bulgaria were obtained. Fructophilic isolates H3 and H25 showed formation of mucous colonies during cultivation on medium with sucrose, suggesting exopolysaccharide synthesis. The sequencing analysis of 16S rRNA identified isolates H3 and H25 as fructophilic lactic acid bacteria Lactobacillus kunkeei. The in situ analysis and periodic acid-Schiff's staining, showed that Lb. kunkeei H3 and H25 produce extracellular glucansucrases with molecular weight of about 300 kDa. In the cell-associated fractions, additional glucansucrase is detected with molecular weight of about 180 kDa. The content of α-(1 → 6) linkages in the glucans synthesized with extracellular glucansucrases from H3 and H25 after dextranase hydrolysis was significantly lower than this one of the classical dextran - about 35 and 62%, respectively. These results suggest a more branched structure of the studied polymers.
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Affiliation(s)
- Tonka Vasileva
- Department of Biochemistry and Microbiology, Laboratory of Biochemistry, Plovdiv University, Plovdiv, Bulgaria
| | - Veselin Bivolarski
- Department of Biochemistry and Microbiology, Laboratory of Biochemistry, Plovdiv University, Plovdiv, Bulgaria
| | - Galya Michailova
- Department of Biochemistry and Microbiology, Laboratory of Biochemistry, Plovdiv University, Plovdiv, Bulgaria
| | - Ayshe Salim
- Department of Biochemistry and Microbiology, Laboratory of Biochemistry, Plovdiv University, Plovdiv, Bulgaria
| | - Yavor Rabadjiev
- Department of General and Industrial Microbiology, Sofia University, Sofia, Bulgaria
| | - Iskra Ivanova
- Department of General and Industrial Microbiology, Sofia University, Sofia, Bulgaria
| | - Ilia Iliev
- Department of Biochemistry and Microbiology, Laboratory of Biochemistry, Plovdiv University, Plovdiv, Bulgaria
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Asenjo F, Olmos A, Henríquez-Piskulich P, Polanco V, Aldea P, Ugalde JA, Trombert AN. Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate. PeerJ 2016; 4:e1950. [PMID: 27114887 PMCID: PMC4841242 DOI: 10.7717/peerj.1950] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2015] [Accepted: 03/29/2016] [Indexed: 01/23/2023] Open
Abstract
Background. The honey bee (Apis mellifera) is the most important pollinator in agriculture worldwide. However, the number of honey bees has fallen significantly since 2006, becoming a huge ecological problem nowadays. The principal cause is CCD, or Colony Collapse Disorder, characterized by the seemingly spontaneous abandonment of hives by their workers. One of the characteristics of CCD in honey bees is the alteration of the bacterial communities in their gastrointestinal tract, mainly due to the decrease of Firmicutes populations, such as the Lactobacilli. At this time, the causes of these alterations remain unknown. We recently isolated a strain of Lactobacillus kunkeei (L. kunkeei strain MP2) from the gut of Chilean honey bees. L. kunkeei, is one of the most commonly isolated bacterium from the honey bee gut and is highly versatile in different ecological niches. In this study, we aimed to elucidate in detail, the L. kunkeei genetic background and perform a comparative genome analysis with other Lactobacillus species. Methods. L. kunkeei MP2 was originally isolated from the guts of Chilean A. mellifera individuals. Genome sequencing was done using Pacific Biosciences single-molecule real-time sequencing technology. De novo assembly was performed using Celera assembler. The genome was annotated using Prokka, and functional information was added using the EggNOG 3.1 database. In addition, genomic islands were predicted using IslandViewer, and pro-phage sequences using PHAST. Comparisons between L. kunkeei MP2 with other L. kunkeei, and Lactobacillus strains were done using Roary. Results. The complete genome of L. kunkeei MP2 comprises one circular chromosome of 1,614,522 nt. with a GC content of 36,9%. Pangenome analysis with 16 L. kunkeei strains, identified 113 unique genes, most of them related to phage insertions. A large and unique region of L. kunkeei MP2 genome contains several genes that encode for phage structural protein and replication components. Comparative analysis of MP2 with other Lactobacillus species, identified several unique genes of L. kunkeei MP2 related with metabolism, biofilm generation, survival under stress conditions, and mobile genetic elements (MGEs). Discussion. The presence of multiple mobile genetic elements, including phage sequences, suggest a high degree of genetic variability in L. kunkeei. Its versatility and ability to survive in different ecological niches (bee guts, flowers, fruits among others) could be given by its genetic capacity to change and adapt to different environments. L. kunkeei could be a new source of Lactobacillus with beneficial properties. Indeed, L. kunkeei MP2 could play an important role in honey bee nutrition through the synthesis of components as isoprenoids.
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Affiliation(s)
- Freddy Asenjo
- Centro de Genética y Genómica, Facultad de Medicina, Clinica Alemana Universidad del Desarrollo , Santiago , Chile
| | - Alejandro Olmos
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor , Santiago , Chile
| | | | - Victor Polanco
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago, Chile; Centro de Estudios Apícolas CEAPI Mayor, Facultad de Ciencias, Universidad Mayor, Santiago, Chile
| | - Patricia Aldea
- Centro de Estudios Apícolas CEAPI Mayor, Facultad de Ciencias, Universidad Mayor , Santiago , Chile
| | - Juan A Ugalde
- Centro de Genética y Genómica, Facultad de Medicina, Clinica Alemana Universidad del Desarrollo , Santiago , Chile
| | - Annette N Trombert
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor , Santiago , Chile
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