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Wijaya T, Kitao A. Energetic and Kinetic Origins of CALB Interfacial Activation Revealed by PaCS-MD/MSM. J Phys Chem B 2023; 127:7431-7441. [PMID: 37562019 PMCID: PMC10476181 DOI: 10.1021/acs.jpcb.3c02041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 07/21/2023] [Indexed: 08/12/2023]
Abstract
The conformational dynamics of Candida antarctica lipase B (CALB) was investigated by molecular dynamics (MD) simulation, parallel cascade selection MD (PaCS-MD), and the Markov state model (MSM) and mainly focused on the lid-opening motion closely related to substrate binding. All-atom MD simulation of CALB was conducted in water and on the interface of water and tricaprylin. CALB initially situated in water and separated by layers of water from the interface is spontaneously adsorbed onto the tricaprylin surface during MD simulation. The opening and closing motions of the lid are simulated by PaCS-MD, and subsequent MSM analysis provided the free-energy landscape and time scale of the conformational transitions among the closed, semiopen, and open states. The closed state is the most stable in the water system, but the stable conformation in the interface system shifts to the semiopen state. These effects could explain the energetics and kinetics origin of the previously reported interfacial activation of CALB. These findings could help expand the application of CALB toward a wide variety of substrates.
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Affiliation(s)
- Tegar
N. Wijaya
- School
of Life Science and Technology, Tokyo Institute
of Technology. 2-12-1
Ookayama, Meguro-ku, Tokyo 152-8550, Japan
- Department
of Chemistry, Universitas Pertamina, Jl. Teuku Nyak Arief, Simprug, Jakarta 12220, Indonesia
| | - Akio Kitao
- School
of Life Science and Technology, Tokyo Institute
of Technology. 2-12-1
Ookayama, Meguro-ku, Tokyo 152-8550, Japan
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2
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Islam H, Gufrana T, Khare S, Pandey A, Radha P. Chicken tallow, a low-cost feedstock for the two-step lipase-catalysed synthesis of biolubricant. BIOCATAL BIOTRANSFOR 2023. [DOI: 10.1080/10242422.2023.2176225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Affiliation(s)
- Hasibul Islam
- Bioprocess and Bioseparation Laboratory, Department of Biotechnology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - Tasneem Gufrana
- Bioprocess and Bioseparation Laboratory, Department of Biotechnology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - Shivani Khare
- Bioprocess and Bioseparation Laboratory, Department of Biotechnology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - Ankita Pandey
- Bioprocess and Bioseparation Laboratory, Department of Biotechnology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - P. Radha
- Bioprocess and Bioseparation Laboratory, Department of Biotechnology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
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3
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Efficacy of the Immobilized Kocuria flava Lipase on Fe3O4/Cellulose Nanocomposite for Biodiesel Production from Cooking Oil Wastes. Catalysts 2022. [DOI: 10.3390/catal12090977] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
The increasing global demand for petroleum oils has led to a significant increase in their cost and has led to the search for renewable alternative waste resources for biodiesel synthesis and production using novel environmentally sound and acceptable methods. In the current study, Kocuria flava lipase was immobilized on Fe3O4/cellulose nanocomposite; and used as a biocatalyst for the conversion of cooking oil wastes into biodiesel through the transesterification/esterification process. The characterization of Fe3O4/cellulose nanocomposite revealed several functional groups including carboxyl (C=O) and epoxy (C-O-C) groups that act as multipoint covalent binding sites between the lipase and the Fe3O4/cellulose nanocomposite and consequently increasing lipase immobility and stability. The immobilized lipase showed a high thermo-stability as it retained about 70% of its activity at 80 °C after 30 min. The kinetics of immobilized lipase revealed that the Km and Vmax values were 0.02 mM and 32.47 U/mg protein, respectively. Moreover, the immobilized lipase showed high stability and reusability for transesterification/esterification reactions for up to four cycles with a slight decline in the enzyme activity. Furthermore, the produced biodiesel characteristics were compatible with the standards, indicating that the biodiesel obtained is doable and may be utilized in our daily life as a diesel fuel.
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4
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Yadav AK, Kuila A, Garlapati VK. Biodiesel Production from Brassica juncea Using Oleaginous Yeast. Appl Biochem Biotechnol 2022; 194:4066-4080. [PMID: 35593952 DOI: 10.1007/s12010-022-03974-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Accepted: 05/10/2022] [Indexed: 11/02/2022]
Abstract
The present study explores the potential of Brassica juncea as a low-cost substrate for biodiesel production through the growth of oleaginous yeast. Firstly, the selected lignocellulosic biomass, i.e., Brassica juncea, was thermochemically pretreated using dilute sodium hydroxide. Optimization of thermochemical pretreatment resulted in significant removal of lignin and hemicellulose with 8.4% increase in cellulose content. Further, the sugar hydrolysate of pretreated biomass was used as a substrate for the growth of selected oleaginous yeast (Cryptococcus sp. MTCC 5455). Lipid and biomass production was optimized using central composite design (CCD) based on response surface methodology (RSM). Maximum biomass and lipid content of 32.50 g/L and 11.05 g/L, respectively, was obtained at 30 °C temperature, pH 6.0, and after 5 days of incubation. The oleaginous yeast lipid was further transesterified using immobilized lipase. The highest fatty acid methyl ester 15% FAME yield was obtained after 10 h of enzymatic reaction. Next, the results of specific gravity, viscosity, flash points, and cloud point of obtained biodiesels were conformed to the ASTM D975 standard. Overall, the present study put forth the cost-effective approach for lignocellulosic biomass-based oleaginous lipid production toward the green synthesis of biodiesel.
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Affiliation(s)
- Ashok Kumar Yadav
- Department of Chemical Engineering, Banasthali Vidyapith, Banasthali, Rajasthan, 304022, India
| | - Arindam Kuila
- Department of Bioscience and Biotechnology, Banasthali Vidyapith, Banasthali, Rajasthan, 304022, India.
| | - Vijay Kumar Garlapati
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Himachal Pradesh, India, 173234.
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Zulqarnain, Yusoff MHM, Ayoub M, Hamza Nazir M, Zahid I, Ameen M, Abbas W, Shoparwe NF, Abbas N. Comprehensive Review on Biodiesel Production from Palm Oil Mill Effluent. CHEMBIOENG REVIEWS 2021. [DOI: 10.1002/cben.202100007] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Zulqarnain
- Universiti Teknologi PETRONAS HICoE – Center for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering 32610 Seri Iskandar Perak Malaysia
| | - Mohd Hizami Mohd Yusoff
- Universiti Teknologi PETRONAS HICoE – Center for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering 32610 Seri Iskandar Perak Malaysia
| | - Muhammad Ayoub
- Universiti Teknologi PETRONAS HICoE – Center for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering 32610 Seri Iskandar Perak Malaysia
| | - Muhammad Hamza Nazir
- Universiti Teknologi PETRONAS HICoE – Center for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering 32610 Seri Iskandar Perak Malaysia
| | - Imtisal Zahid
- Universiti Teknologi PETRONAS HICoE – Center for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering 32610 Seri Iskandar Perak Malaysia
| | - Mariam Ameen
- Universiti Teknologi PETRONAS HICoE – Center for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering 32610 Seri Iskandar Perak Malaysia
| | - Wajahat Abbas
- University of Engineering and Technology Department of Environmental Engineering 47080 Taxila Pakistan
| | - Noor Fazliani Shoparwe
- Universiti Malaysia Kelantan Faculty of Bioengineering and Technology, Jeli Campus 17600 Jeli Kelantan Malaysia
| | - Nadir Abbas
- University of Ha'il Department of Chemical Engineering, College of Engineering 81441 Ha'il Saudia Arabia
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6
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Aydemir D, Gecili F, Özdemir N, Nuray Ulusu N. Synthesis and characterization of a triple enzyme-inorganic hybrid nanoflower (TrpE@ihNF) as a combination of three pancreatic digestive enzymes amylase, protease and lipase. J Biosci Bioeng 2020; 129:679-686. [DOI: 10.1016/j.jbiosc.2020.01.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Revised: 01/21/2020] [Accepted: 01/30/2020] [Indexed: 01/08/2023]
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7
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Afifah A, Syahrullail S, Wan Azlee NI, Che Sidik NA, Yahya W, Abd Rahim E. Biolubricant production from palm stearin through enzymatic transesterification method. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2019.05.009] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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8
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Banka S, Parikh SP. Nonedible oil biodiesels: The cutting‐edge future of renewable energy in India. ASIA-PAC J CHEM ENG 2019. [DOI: 10.1002/apj.2310] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Samidha Banka
- Chemical Engineering DepartmentGujarat Technological University Ahmedabad India
| | - Sachin P. Parikh
- Chemical Engineering DepartmentGujarat Technological University Ahmedabad India
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9
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Lajis AFB. Realm of Thermoalkaline Lipases in Bioprocess Commodities. J Lipids 2018; 2018:5659683. [PMID: 29666707 PMCID: PMC5832097 DOI: 10.1155/2018/5659683] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 01/16/2018] [Accepted: 01/18/2018] [Indexed: 11/28/2022] Open
Abstract
For decades, microbial lipases are notably used as biocatalysts and efficiently catalyze various processes in many important industries. Biocatalysts are less corrosive to industrial equipment and due to their substrate specificity and regioselectivity they produced less harmful waste which promotes environmental sustainability. At present, thermostable and alkaline tolerant lipases have gained enormous interest as biocatalyst due to their stability and robustness under high temperature and alkaline environment operation. Several characteristics of the thermostable and alkaline tolerant lipases are discussed. Their molecular weight and resistance towards a range of temperature, pH, metal, and surfactants are compared. Their industrial applications in biodiesel, biodetergents, biodegreasing, and other types of bioconversions are also described. This review also discusses the advance of fermentation process for thermostable and alkaline tolerant lipases production focusing on the process development in microorganism selection and strain improvement, culture medium optimization via several optimization techniques (i.e., one-factor-at-a-time, surface response methodology, and artificial neural network), and other fermentation parameters (i.e., inoculums size, temperature, pH, agitation rate, dissolved oxygen tension (DOT), and aeration rate). Two common fermentation techniques for thermostable and alkaline tolerant lipases production which are solid-state and submerged fermentation methods are compared and discussed. Recent optimization approaches using evolutionary algorithms (i.e., Genetic Algorithm, Differential Evolution, and Particle Swarm Optimization) are also highlighted in this article.
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Affiliation(s)
- Ahmad Firdaus B. Lajis
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Malaysia
- Bioprocessing and Biomanufacturing Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Malaysia
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10
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Sarmah N, Revathi D, Sheelu G, Yamuna Rani K, Sridhar S, Mehtab V, Sumana C. Recent advances on sources and industrial applications of lipases. Biotechnol Prog 2017; 34:5-28. [DOI: 10.1002/btpr.2581] [Citation(s) in RCA: 172] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 10/18/2017] [Indexed: 12/13/2022]
Affiliation(s)
- Nipon Sarmah
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Academy of Scientific and Innovative Research (AcSIR); Chennai 600 113 India
| | - D. Revathi
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - G. Sheelu
- Medicinal Chemistry and Pharmacology Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - K. Yamuna Rani
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - S. Sridhar
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - V. Mehtab
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - C. Sumana
- Chemical Engineering Div.; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Academy of Scientific and Innovative Research (AcSIR); Chennai 600 113 India
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Dash A, Banerjee R. Enhanced biodiesel production through phyco-myco co-cultivation of Chlorella minutissima and Aspergillus awamori: An integrated approach. BIORESOURCE TECHNOLOGY 2017; 238:502-509. [PMID: 28475992 DOI: 10.1016/j.biortech.2017.04.039] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 04/08/2017] [Accepted: 04/10/2017] [Indexed: 05/24/2023]
Abstract
Algae-fungus co-culture was investigated as an alternative biodiesel feedstock. An oleaginous filamentous fungus Aspergillus awamori was co-cultured with Chlorella minutissima MCC 27 and Chlorella minutissima UTEX 2219, respectively in N11 medium furnished with different carbon and nitrogen sources. The biomass and lipid production potential of the two C. minutissima-A. awamori co-cultures was compared against the monocultures. A substantial enhancement in biomass and lipid accumulation was observed in both the co-cultures. When supplemented with different carbon and nitrogen sources, glycerol and potassium nitrate were found to be the most effective. In the presence of glycerol, a 2.6-3.9-fold increase of biomass and 3.4-5.1-fold increase of total lipid yields were observed in the co-cultures as compared to the axenic monocultures. Furthermore, C16:0 (31.26-35.02%) and C18:1 (21.14-24.21%) fatty acids were the major composites of the co-culture oils, which suggest co-culture as a promising strategy for biodiesel production.
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Affiliation(s)
- Archana Dash
- Agricultural and Food Engineering Department, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Rintu Banerjee
- Agricultural and Food Engineering Department, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
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12
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Khaleghinejad SH, Motalleb G, Karkhane AA, Aminzadeh S, Yakhchali B. Study the effect of F17S mutation on the chimeric Bacillus thermocatenulatus lipase. J Genet Eng Biotechnol 2016; 14:83-89. [PMID: 30647601 PMCID: PMC6299889 DOI: 10.1016/j.jgeb.2016.08.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Accepted: 08/14/2016] [Indexed: 11/17/2022]
Abstract
Lipases (triacylglycerol acylhydrolase, EC 3.1.1.3) are one of the highest value commercial enzymes as they have potential applications in biotechnology for detergents, food, pharmaceuticals, leather, textiles, cosmetics, and paper industries; and are currently receiving considerable attention because of their potential applications in biotechnology. Bacillus thermocatenulatus Lipase 2 (BTL2) is one of the most important research targets, because of its potential industrial applications. In this study, the effect of substitution Phe17 with Ser in mutated BTL2 lipase, which conserved pentapeptide (112Ala-His-Ser-Gln-Gly116) was replaced with similar sequences (207Gly-Glu-Ser-Ala-Gly211) of Candida rugosa lipase (CLR) at the nucleophilic elbow region. Docking results confirmed the mutated lipase to be better than the chimeric lipase. So, cloning was conducted, and the mutated and chimeric btl2 genes were expressed in Escherichia coli, and then the enzymes were purified by anion exchange chromatography. The mutation increased lipase lipolytic activity against most of the applied substrates, with the exception of tributyrin when compared with chimeric lipase. Further, the mutated lipase exhibited higher activity than the chimeric lipase at all temperatures. Optimum pH of the mutated lipase was obtained at pH 9.5, which was more than the chimeric one. Enzyme activity of the mutated lipase in the presence of organic solvents, detergents, and metal ions was also improved than the chimeric lipase.
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Affiliation(s)
| | - Gholamreza Motalleb
- Department of Biology, Faculty of Sciences, University of Zabol, Zabol, Iran
| | - Ali Asghar Karkhane
- Department of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran
| | - Saeed Aminzadeh
- Department of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran
| | - Bagher Yakhchali
- Department of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran
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Dual bioimprinting of Thermomyces lanuginosus lipase for synthesis of biodiesel. ACTA ACUST UNITED AC 2016; 10:38-43. [PMID: 28352522 PMCID: PMC5040861 DOI: 10.1016/j.btre.2016.02.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Revised: 02/24/2016] [Accepted: 02/29/2016] [Indexed: 11/23/2022]
Abstract
High activity TLL is made by dually bioimprinting with substrate alcohol and a surfactant. TLL (28 U/g of oil) bioimprinted with only the surfactants could yield 99% biodiesel from soybean oil in about 4 h. Dually bioimprinted TLL (only 1.4 U/g of oil) was able to yield 99% biodiesel within 48 h
Use of biodiesel as an alternative to non-renewable sources of energy has become an attractive option in recent years. The enzymatic synthesis of biodiesel by transesterification of fats/oils with an alcohol is a much more sustainable route than the chemical method. However, cost effectiveness of the enzymatic route is a major barrier in its commercialization. In this work, a high activity biocatalyst design of Thermomyces lanuginosus lipase is made by dually bioimprinting it with substrate and a surfactant (which is believed to open up the lid covering the active site of the lipase) during precipitation of the lipase in organic solvent. When the lipase was bioimprinted with only the surfactants, 28 U of the enzyme/g of oil could yield 99% biodiesel from soybean oil in about 4 h. However, when dually bioimprinted even very low enzyme load 1.4 U/g of oil, yielded 99% biodiesel within 48 h.
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14
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Taher H, Al-Zuhair S, Al-Marzouqi AH, Haik Y, Farid M. Enzymatic biodiesel production of microalgae lipids under supercritical carbon dioxide: Process optimization and integration. Biochem Eng J 2014. [DOI: 10.1016/j.bej.2014.05.019] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Kannan K, Mukherjee J, Gupta MN. Immobilization of a Lipase on Mesocellular Foam of Silica for Biocatalysis in Low-water-containing Organic Solvents. CHEM LETT 2014. [DOI: 10.1246/cl.140228] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Kayambu Kannan
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi
| | | | - Munishwar N. Gupta
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi
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Elnashar MMM, Mostafa H, Morsy NA, Awad GEA. Biocatalysts: Isolation, Identification, and Immobilization of Thermally Stable Lipase onto Three Novel Biopolymeric Supports. Ind Eng Chem Res 2013. [DOI: 10.1021/ie402960d] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | - Nagy A. Morsy
- Faculty of Sciences & Arts, Chemistry Department, King Abdulaziz University, Khulais, KSA
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