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Abstract
Bursting is one of the fundamental rhythms that excitable cells can generate either in response to incoming stimuli or intrinsically. It has been a topic of intense research in computational biology for several decades. The classification of bursting oscillations in excitable systems has been the subject of active research since the early 1980s and is still ongoing. As a by-product, it establishes analytical and numerical foundations for studying complex temporal behaviors in multiple timescale models of cellular activity. In this review, we first present the seminal works of Rinzel and Izhikevich in classifying bursting patterns of excitable systems. We recall a complementary mathematical classification approach by Bertram and colleagues, and then by Golubitsky and colleagues, which, together with the Rinzel-Izhikevich proposals, provide the state-of-the-art foundations to these classifications. Beyond classical approaches, we review a recent bursting example that falls outside the previous classification systems. Generalizing this example leads us to propose an extended classification, which requires the analysis of both fast and slow subsystems of an underlying slow-fast model and allows the dissection of a larger class of bursters. Namely, we provide a general framework for bursting systems with both subthreshold and superthreshold oscillations. A new class of bursters with at least 2 slow variables is then added, which we denote folded-node bursters, to convey the idea that the bursts are initiated or annihilated via a folded-node singularity. Key to this mechanism are so-called canard or duck orbits, organizing the underpinning excitability structure. We describe the 2 main families of folded-node bursters, depending upon the phase (active/spiking or silent/nonspiking) of the bursting cycle during which folded-node dynamics occurs. We classify both families and give examples of minimal systems displaying these novel bursting patterns. Finally, we provide a biophysical example by reinterpreting a generic conductance-based episodic burster as a folded-node burster, showing that the associated framework can explain its subthreshold oscillations over a larger parameter region than the fast subsystem approach. Bursting is ubiquitous in cellular excitable rhythms and comes in a plethora of patterns, both experimentally recorded and reproduced through models. As these different patterns may reflect different coding or information properties, it is therefore crucial to develop modeling frameworks that can both capture them and understand their characteristics. In this review, we propose a comprehensive account of the main bursting classification systems that have been developed over the past 40 years, together with recent developments allowing us to extend these classifications. Based upon bifurcation theory and heavily reliant on timescale separation, these schemes take full advantage of the fast subsystem analysis, obtained when slow variables are frozen and considered as bifurcation parameters. We complement this classical view by showing that nontrivial slow subsystem may also encode key informations important to classify bursting rhythms, due to the presence of so-called folded-node singularities. We provide minimal idealized models as well as one generic conductance-based example displaying bursting oscillations that require our extended classification in order to be fully characterized. We also highlight examples of biological data that could be suitably revisited with the lenses of this extended classifications and could lead to new models of complex cellular activity.
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Affiliation(s)
- Mathieu Desroches
- MathNeuro Team, Inria Sophia Antipolis Méditerranée Research Centre, Sophia Antipolis, France
- MCEN Team, Basque Centre for Applied Mathematics (BCAM), Bilbao, Bizkaia, Spain
- * E-mail: (MD); (SR)
| | - John Rinzel
- Center for Neural Science, New York University, New York, New York, United States of America
- Courant Institute for Mathematical Sciences, New York University, New York, New York, United States of America
| | - Serafim Rodrigues
- MCEN Team, Basque Centre for Applied Mathematics (BCAM), Bilbao, Bizkaia, Spain
- Ikerbasque, The Basque Science Foundation, Bilbao, Bizkaia, Spain
- * E-mail: (MD); (SR)
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2
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Pedersen MG, Brøns M, Sørensen MP. Amplitude-modulated spiking as a novel route to bursting: Coupling-induced mixed-mode oscillations by symmetry breaking. CHAOS (WOODBURY, N.Y.) 2022; 32:013121. [PMID: 35105132 DOI: 10.1063/5.0072497] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
Mixed-mode oscillations consisting of alternating small- and large-amplitude oscillations are increasingly well understood and are often caused by folded singularities, canard orbits, or singular Hopf bifurcations. We show that coupling between identical nonlinear oscillators can cause mixed-mode oscillations because of symmetry breaking. This behavior is illustrated for diffusively coupled FitzHugh-Nagumo oscillators with negative coupling constant, and we show that it is caused by a singular Hopf bifurcation related to a folded saddle-node (FSN) singularity. Inspired by earlier work on models of pancreatic beta-cells [Sherman, Bull. Math. Biol. 56, 811 (1994)], we then identify a new type of bursting dynamics due to diffusive coupling of cells firing action potentials when isolated. In the presence of coupling, small-amplitude oscillations in the action potential height precede transitions to square-wave bursting. Confirming the hypothesis from the earlier work that this behavior is related to a pitchfork-of-limit-cycles bifurcation in the fast subsystem, we find that it is caused by symmetry breaking. Moreover, we show that it is organized by a FSN in the averaged system, which causes a singular Hopf bifurcation. Such behavior is related to the recently studied dynamics caused by the so-called torus canards.
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Affiliation(s)
- Morten Gram Pedersen
- Department of Information Engineering and Department of Mathematics "Tullio-Levi Civita," University of Padova, I-35131 Padova, Italy
| | - Morten Brøns
- Department of Applied Mathematics and Computer Science, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
| | - Mads Peter Sørensen
- Department of Applied Mathematics and Computer Science, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
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3
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Xiong X, Li Y, Zheng D. Dynamic mechanism of multiple bursting patterns in a whole-cell multiscale model with calcium oscillations. JOURNAL OF BIOLOGICAL DYNAMICS 2021; 15:308-326. [PMID: 34092205 DOI: 10.1080/17513758.2021.1925753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 04/22/2021] [Indexed: 06/12/2023]
Abstract
The dynamic mechanism of a whole-cell model containing electrical signalling and two-compartment Ca2+ signalling in gonadotrophs is investigated. The transition from spiking to bursting by Hopf bifurcation of the fast subsystem about the slow variable is detected via the suitable parameters. When the timescale of K+ gating variable is changed, the relaxation oscillation with locally small fluctuation, chaotic bursting and mixed-mode bursting (MMB) are revealed through chaos. In addition, the bifurcation of [Ca2+]i with regard to [IP3] is analysed, showing periodic solutions, torus, period doubling solutions and chaos. Finally, hyperpolarizations and torus canard-like behaviours of the full system under a set of specific parameters are elucidated.
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Affiliation(s)
- Xiaowen Xiong
- School of Physical and Mathematical Sciences, Nanjing Tech University, Nanjing, People's Republic of China
| | - Yanqiu Li
- School of Physical and Mathematical Sciences, Nanjing Tech University, Nanjing, People's Republic of China
| | - Dongmei Zheng
- School of Physical and Mathematical Sciences, Nanjing Tech University, Nanjing, People's Republic of China
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Köksal Ersöz E, Wendling F. Canard solutions in neural mass models: consequences on critical regimes. JOURNAL OF MATHEMATICAL NEUROSCIENCE 2021; 11:11. [PMID: 34529192 PMCID: PMC8446153 DOI: 10.1186/s13408-021-00109-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 08/17/2021] [Indexed: 05/06/2023]
Abstract
Mathematical models at multiple temporal and spatial scales can unveil the fundamental mechanisms of critical transitions in brain activities. Neural mass models (NMMs) consider the average temporal dynamics of interconnected neuronal subpopulations without explicitly representing the underlying cellular activity. The mesoscopic level offered by the neural mass formulation has been used to model electroencephalographic (EEG) recordings and to investigate various cerebral mechanisms, such as the generation of physiological and pathological brain activities. In this work, we consider a NMM widely accepted in the context of epilepsy, which includes four interacting neuronal subpopulations with different synaptic kinetics. Due to the resulting three-time-scale structure, the model yields complex oscillations of relaxation and bursting types. By applying the principles of geometric singular perturbation theory, we unveil the existence of the canard solutions and detail how they organize the complex oscillations and excitability properties of the model. In particular, we show that boundaries between pathological epileptic discharges and physiological background activity are determined by the canard solutions. Finally we report the existence of canard-mediated small-amplitude frequency-specific oscillations in simulated local field potentials for decreased inhibition conditions. Interestingly, such oscillations are actually observed in intracerebral EEG signals recorded in epileptic patients during pre-ictal periods, close to seizure onsets.
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Affiliation(s)
- Elif Köksal Ersöz
- Univ Rennes, INSERM, LTSI-U1099, Campus de Beaulieu, F - 35000, Rennes, France
| | - Fabrice Wendling
- Univ Rennes, INSERM, LTSI-U1099, Campus de Beaulieu, F - 35000, Rennes, France.
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Baspinar E, Avitabile D, Desroches M. Canonical models for torus canards in elliptic bursters. CHAOS (WOODBURY, N.Y.) 2021; 31:063129. [PMID: 34241290 DOI: 10.1063/5.0037204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 05/19/2021] [Indexed: 06/13/2023]
Abstract
We revisit elliptic bursting dynamics from the viewpoint of torus canard solutions. We show that at the transition to and from elliptic burstings, classical or mixed-type torus canards may appear, the difference between the two being the fast subsystem bifurcation that they approach: saddle-node of cycles for the former and subcritical Hopf for the latter. We first showcase such dynamics in a Wilson-Cowan-type elliptic bursting model, then we consider minimal models for elliptic bursters in view of finding transitions to and from bursting solutions via both kinds of torus canards. We first consider the canonical model proposed by Izhikevich [SIAM J. Appl. Math. 60, 503-535 (2000)] and adapted to elliptic bursting by Ju et al. [Chaos 28, 106317 (2018)] and we show that it does not produce mixed-type torus canards due to a nongeneric transition at one end of the bursting regime. We, therefore, introduce a perturbative term in the slow equation, which extends this canonical form to a new one that we call Leidenator and which supports the right transitions to and from elliptic bursting via classical and mixed-type torus canards, respectively. Throughout the study, we use singular flows ( ε=0) to predict the full system's dynamics ( ε>0 small enough). We consider three singular flows, slow, fast, and average slow, so as to appropriately construct singular orbits corresponding to all relevant dynamics pertaining to elliptic bursting and torus canards. Finally, we comment on possible links with mixed-type torus canards and folded-saddle-node singularities in non-canonical elliptic bursters that possess a natural three-timescale structure.
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Affiliation(s)
- E Baspinar
- MathNeuro Team, Inria Sophia Antipolis Méditerranée, 06902 Sophia Antipolis, France
| | - D Avitabile
- MathNeuro Team, Inria Sophia Antipolis Méditerranée, 06902 Sophia Antipolis, France
| | - M Desroches
- MathNeuro Team, Inria Sophia Antipolis Méditerranée, 06902 Sophia Antipolis, France
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6
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Köksal Ersöz E, Desroches M, Guillamon A, Rinzel J, Tabak J. Canard-induced complex oscillations in an excitatory network. J Math Biol 2020; 80:2075-2107. [PMID: 32266428 DOI: 10.1007/s00285-020-01490-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 03/25/2020] [Indexed: 10/24/2022]
Abstract
In Neuroscience, mathematical modelling involving multiple spatial and temporal scales can unveil complex oscillatory activity such as excitable responses to an input current, subthreshold oscillations, spiking or bursting. While the number of slow and fast variables and the geometry of the system determine the type of the complex oscillations, canard structures define boundaries between them. In this study, we use geometric singular perturbation theory to identify and characterise boundaries between different dynamical regimes in multiple-timescale firing rate models of the developing spinal cord. These rate models are either three or four dimensional with state variables chosen within an overall group of two slow and two fast variables. The fast subsystem corresponds to a recurrent excitatory network with fast activity-dependent synaptic depression, and the slow variables represent the cell firing threshold and slow activity-dependent synaptic depression, respectively. We start by demonstrating canard-induced bursting and mixed-mode oscillations in two different three-dimensional rate models. Then, in the full four-dimensional model we show that a canard-mediated slow passage creates dynamics that combine these complex oscillations and give rise to mixed-mode bursting oscillations (MMBOs). We unveil complicated isolas along which MMBOs exist in parameter space. The profile of solutions along each isola undergoes canard-mediated transitions between the sub-threshold regime and the bursting regime; these explosive transitions change the number of oscillations in each regime. Finally, we relate the MMBO dynamics to experimental recordings and discuss their effects on the silent phases of bursting patterns as well as their potential role in creating subthreshold fluctuations that are often interpreted as noise. The mathematical framework used in this paper is relevant for modelling multiple timescale dynamics in excitable systems.
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Affiliation(s)
- Elif Köksal Ersöz
- MathNeuro Team, Inria Sophia Antipolis Méditerranée, Valbonne, France. .,Université Côte d'Azur, Nice, France. .,LTSI-U1099, INSERM, 35000, Rennes, France.
| | - Mathieu Desroches
- MathNeuro Team, Inria Sophia Antipolis Méditerranée, Valbonne, France.,Université Côte d'Azur, Nice, France
| | - Antoni Guillamon
- Departament de Matemàtiques, Universitat Politècnica de Catalunya, Barcelona, Spain
| | - John Rinzel
- Center for Neural Science, New York University, New York, USA.,Courant Institute for Mathematical Sciences, New York University, New York, USA
| | - Joël Tabak
- University of Exeter Medical School, University of Exeter, Exeter, UK
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7
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Mechanisms of dynamical complexity changes in patterns of sensory neurons under antinociceptive effect emergence. Neurocomputing 2020. [DOI: 10.1016/j.neucom.2019.10.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Velarde OM, Urdapilleta E, Mato G, Dellavale D. Bifurcation structure determines different phase-amplitude coupling patterns in the activity of biologically plausible neural networks. Neuroimage 2019; 202:116031. [PMID: 31330244 DOI: 10.1016/j.neuroimage.2019.116031] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Revised: 07/10/2019] [Accepted: 07/16/2019] [Indexed: 12/15/2022] Open
Abstract
Phase-amplitude cross frequency coupling (PAC) is a rather ubiquitous phenomenon that has been observed in a variety of physical domains; however, the mechanisms underlying the emergence of PAC and its functional significance in the context of neural processes are open issues under debate. In this work we analytically demonstrate that PAC phenomenon naturally emerges in mean-field models of biologically plausible networks, as a signature of specific bifurcation structures. The proposed analysis, based on bifurcation theory, allows the identification of the mechanisms underlying oscillatory dynamics that are essentially different in the context of PAC. Specifically, we found that two PAC classes can coexist in the complex dynamics of the analyzed networks: 1) harmonic PAC which is an epiphenomenon of the nonsinusoidal waveform shape characterized by the linear superposition of harmonically related spectral components, and 2) nonharmonic PAC associated with "true" coupled oscillatory dynamics with independent frequencies elicited by a secondary Hopf bifurcation and mechanisms involving periodic excitation/inhibition (PEI) of a network population. Importantly, these two PAC types have been experimentally observed in a variety of neural architectures confounding traditional parametric and nonparametric PAC metrics, like those based on linear filtering or the waveform shape analysis, due to the fact that these methods operate on a single one-dimensional projection of an intrinsically multidimensional system dynamics. We exploit the proposed tools to study the functional significance of the PAC phenomenon in the context of Parkinson's disease (PD). Our results show that pathological slow oscillations (e.g. β band) and nonharmonic PAC patterns emerge from dissimilar underlying mechanisms (bifurcations) and are associated to the competition of different BG-thalamocortical loops. Thus, this study provides theoretical arguments that demonstrate that nonharmonic PAC is not an epiphenomenon related to the pathological β band oscillations, thus supporting the experimental evidence about the relevance of PAC as a potential biomarker of PD.
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Affiliation(s)
- Osvaldo Matías Velarde
- Centro Atómico Bariloche and Instituto Balseiro, Comisión Nacional de Energía Atómica (CNEA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Cuyo (UNCUYO), Av. E. Bustillo 9500, R8402AGP, San Carlos de Bariloche, Río Negro, Argentina
| | - Eugenio Urdapilleta
- Centro Atómico Bariloche and Instituto Balseiro, Comisión Nacional de Energía Atómica (CNEA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Cuyo (UNCUYO), Av. E. Bustillo 9500, R8402AGP, San Carlos de Bariloche, Río Negro, Argentina
| | - Germán Mato
- Centro Atómico Bariloche and Instituto Balseiro, Comisión Nacional de Energía Atómica (CNEA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Cuyo (UNCUYO), Av. E. Bustillo 9500, R8402AGP, San Carlos de Bariloche, Río Negro, Argentina.
| | - Damián Dellavale
- Centro Atómico Bariloche and Instituto Balseiro, Comisión Nacional de Energía Atómica (CNEA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de Cuyo (UNCUYO), Av. E. Bustillo 9500, R8402AGP, San Carlos de Bariloche, Río Negro, Argentina.
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9
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Bashkirtseva I, Ryashko L, Slepukhina E. Noise-induced spiking-bursting transition in the neuron model with the blue sky catastrophe. Phys Rev E 2019; 99:062408. [PMID: 31330693 DOI: 10.1103/physreve.99.062408] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Indexed: 05/26/2023]
Abstract
We study a special variant of the noise-induced transition between spiking and bursting regimes associated with the blue sky catastrophe bifurcation in the Hindmarsh-Rose neuron model. We show that in the parameter region close to the bifurcation value, where the only attractor of the system is the limit cycle of tonic spiking type, noise can transform the spiking oscillatory regime to the bursting one. This phenomenon is studied by means of power spectral density and interspike intervals statistics. We show that noise shifts the bifurcation value, so that bursting activity can be observed for a wider parameter range. Moreover, we reveal that the stochastic spiking-bursting transitions in this system are accompanied by the change in sign of the Lyapunov exponent. We perform a detailed quantitative analysis of these phenomena with an approach that uses a concept of the stochastic sensitivity function, the confidence domains method, and Mahalanobis metrics.
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Affiliation(s)
- Irina Bashkirtseva
- Institute of Natural Sciences and Mathematics, Ural Federal University, Lenina 51, Ekaterinburg, Russia
| | - Lev Ryashko
- Institute of Natural Sciences and Mathematics, Ural Federal University, Lenina 51, Ekaterinburg, Russia
| | - Evdokia Slepukhina
- Institute of Natural Sciences and Mathematics, Ural Federal University, Lenina 51, Ekaterinburg, Russia
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11
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Hasan CR, Krauskopf B, Osinga HM. Saddle Slow Manifolds and Canard Orbits in [Formula: see text] and Application to the Full Hodgkin-Huxley Model. JOURNAL OF MATHEMATICAL NEUROSCIENCE 2018; 8:5. [PMID: 29675585 PMCID: PMC5908812 DOI: 10.1186/s13408-018-0060-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2017] [Accepted: 04/05/2018] [Indexed: 05/22/2023]
Abstract
Many physiological phenomena have the property that some variables evolve much faster than others. For example, neuron models typically involve observable differences in time scales. The Hodgkin-Huxley model is well known for explaining the ionic mechanism that generates the action potential in the squid giant axon. Rubin and Wechselberger (Biol. Cybern. 97:5-32, 2007) nondimensionalized this model and obtained a singularly perturbed system with two fast, two slow variables, and an explicit time-scale ratio ε. The dynamics of this system are complex and feature periodic orbits with a series of action potentials separated by small-amplitude oscillations (SAOs); also referred to as mixed-mode oscillations (MMOs). The slow dynamics of this system are organized by two-dimensional locally invariant manifolds called slow manifolds which can be either attracting or of saddle type.In this paper, we introduce a general approach for computing two-dimensional saddle slow manifolds and their stable and unstable fast manifolds. We also develop a technique for detecting and continuing associated canard orbits, which arise from the interaction between attracting and saddle slow manifolds, and provide a mechanism for the organization of SAOs in [Formula: see text]. We first test our approach with an extended four-dimensional normal form of a folded node. Our results demonstrate that our computations give reliable approximations of slow manifolds and canard orbits of this model. Our computational approach is then utilized to investigate the role of saddle slow manifolds and associated canard orbits of the full Hodgkin-Huxley model in organizing MMOs and determining the firing rates of action potentials. For ε sufficiently large, canard orbits are arranged in pairs of twin canard orbits with the same number of SAOs. We illustrate how twin canard orbits partition the attracting slow manifold into a number of ribbons that play the role of sectors of rotations. The upshot is that we are able to unravel the geometry of slow manifolds and associated canard orbits without the need to reduce the model.
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Affiliation(s)
- Cris R. Hasan
- Department of Mathematics, The University of Auckland, Auckland, New Zealand
| | - Bernd Krauskopf
- Department of Mathematics, The University of Auckland, Auckland, New Zealand
| | - Hinke M. Osinga
- Department of Mathematics, The University of Auckland, Auckland, New Zealand
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Ryashko L, Slepukhina E. Noise-induced torus bursting in the stochastic Hindmarsh-Rose neuron model. Phys Rev E 2017; 96:032212. [PMID: 29346914 DOI: 10.1103/physreve.96.032212] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Indexed: 06/07/2023]
Abstract
We study the phenomenon of noise-induced torus bursting on the base of the three-dimensional Hindmarsh-Rose neuron model forced by additive noise. We show that in the parametric zone close to the Neimark-Sacker bifurcation, where the deterministic system exhibits rapid tonic spiking oscillations, random disturbances can turn tonic spiking into bursting, which is characterized by the formation of a peculiar dynamical structure resembling that of a torus. This phenomenon is confirmed by the changes in dispersion of random trajectories as well as the power spectral density and interspike intervals statistics. In particular, we show that as noise increases, the system undergoes P and D bifurcations, transitioning from order to chaos. We ultimately characterize the transition from stochastic (tonic) spiking to bursting by stochastic sensitivity functions.
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Affiliation(s)
- Lev Ryashko
- Institute of Natural Sciences and Mathematics, Ural Federal University, Lenina 51, Ekaterinburg, Russia
| | - Evdokia Slepukhina
- Institute of Natural Sciences and Mathematics, Ural Federal University, Lenina 51, Ekaterinburg, Russia
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13
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Diekman CO, Thomas PJ, Wilson CG. Eupnea, tachypnea, and autoresuscitation in a closed-loop respiratory control model. J Neurophysiol 2017; 118:2194-2215. [PMID: 28724778 DOI: 10.1152/jn.00170.2017] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 06/22/2017] [Accepted: 07/12/2017] [Indexed: 11/22/2022] Open
Abstract
How sensory information influences the dynamics of rhythm generation varies across systems, and general principles for understanding this aspect of motor control are lacking. Determining the origin of respiratory rhythm generation is challenging because the mechanisms in a central circuit considered in isolation may be different from those in the intact organism. We analyze a closed-loop respiratory control model incorporating a central pattern generator (CPG), the Butera-Rinzel-Smith (BRS) model, together with lung mechanics, oxygen handling, and chemosensory components. We show that 1) embedding the BRS model neuron in a control loop creates a bistable system; 2) although closed-loop and open-loop (isolated) CPG systems both support eupnea-like bursting activity, they do so via distinct mechanisms; 3) chemosensory feedback in the closed loop improves robustness to variable metabolic demand; 4) the BRS model conductances provide an autoresuscitation mechanism for recovery from transient interruption of chemosensory feedback; and 5) the in vitro brain stem CPG slice responds to hypoxia with transient bursting that is qualitatively similar to in silico autoresuscitation. Bistability of bursting and tonic spiking in the closed-loop system corresponds to coexistence of eupnea-like breathing, with normal minute ventilation and blood oxygen level and a tachypnea-like state, with pathologically reduced minute ventilation and critically low blood oxygen. Disruption of the normal breathing rhythm, through either imposition of hypoxia or interruption of chemosensory feedback, can push the system from the eupneic state into the tachypneic state. We use geometric singular perturbation theory to analyze the system dynamics at the boundary separating eupnea-like and tachypnea-like outcomes.NEW & NOTEWORTHY A common challenge facing rhythmic biological processes is the adaptive regulation of central pattern generator (CPG) activity in response to sensory feedback. We apply dynamical systems tools to understand several properties of a closed-loop respiratory control model, including the coexistence of normal and pathological breathing, robustness to changes in metabolic demand, spontaneous autoresuscitation in response to hypoxia, and the distinct mechanisms that underlie rhythmogenesis in the intact control circuit vs. the isolated, open-loop CPG.
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Affiliation(s)
- Casey O Diekman
- Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey; .,Institute for Brain and Neuroscience Research, New Jersey Institute of Technology, Newark, New Jersey
| | - Peter J Thomas
- Department of Mathematics, Applied Mathematics, and Statistics, Department of Biology, Department of Cognitive Science, and Department of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, Ohio
| | - Christopher G Wilson
- Lawrence D. Longo Center for Perinatal Biology, Division of Physiology, School of Medicine, Loma Linda University, Loma Linda, California; and
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Vo T, Kramer MA, Kaper TJ. Amplitude-Modulated Bursting: A Novel Class of Bursting Rhythms. PHYSICAL REVIEW LETTERS 2016; 117:268101. [PMID: 28059538 DOI: 10.1103/physrevlett.117.268101] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Indexed: 06/06/2023]
Abstract
We report on the discovery of a novel class of bursting rhythms, called amplitude-modulated bursting (AMB), in a model for intracellular calcium dynamics. We find that these rhythms are robust and exist on open parameter sets. We develop a new mathematical framework with broad applicability to detect, classify, and rigorously analyze AMB. Here we illustrate this framework in the context of AMB in a model of intracellular calcium dynamics. In the process, we discover a novel family of singularities, called toral folded singularities, which are the organizing centers for the amplitude modulation and exist generically in slow-fast systems with two or more slow variables.
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Affiliation(s)
- Theodore Vo
- Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02215, USA
| | - Mark A Kramer
- Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02215, USA
| | - Tasso J Kaper
- Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02215, USA
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15
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Bertram R, Rubin JE. Multi-timescale systems and fast-slow analysis. Math Biosci 2016; 287:105-121. [PMID: 27424950 DOI: 10.1016/j.mbs.2016.07.003] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Revised: 07/01/2016] [Accepted: 07/10/2016] [Indexed: 11/28/2022]
Abstract
Mathematical models of biological systems often have components that vary on different timescales. This multi-timescale character can lead to problems when doing computer simulations, which can require a great deal of computer time so that the components that change on the fastest time scale can be resolved. Mathematical analysis of these multi-timescale systems can be greatly simplified by partitioning them into subsystems that evolve on different time scales. The subsystems are then analyzed semi-independently, using a technique called fast-slow analysis. In this review we describe the fast-slow analysis technique and apply it to relaxation oscillations, neuronal bursting oscillations, canard oscillations, and mixed-mode oscillations. Although these examples all involve neural systems, the technique can and has been applied to other biological, chemical, and physical systems. It is a powerful analysis method that will become even more useful in the future as new experimental techniques push forward the complexity of biological models.
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Affiliation(s)
- Richard Bertram
- Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University, Florida State University, Tallahassee, FL, United States.
| | - Jonathan E Rubin
- Department of Mathematics, University of Pittsburgh, Pittsburgh, PA, United States
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Marin B, Pinto RD, Elson RC, Colli E. Noise, transient dynamics, and the generation of realistic interspike interval variation in square-wave burster neurons. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:042718. [PMID: 25375534 DOI: 10.1103/physreve.90.042718] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2014] [Indexed: 06/04/2023]
Abstract
First return maps of interspike intervals for biological neurons that generate repetitive bursts of impulses can display stereotyped structures (neuronal signatures). Such structures have been linked to the possibility of multicoding and multifunctionality in neural networks that produce and control rhythmical motor patterns. In some cases, isolating the neurons from their synaptic network reveals irregular, complex signatures that have been regarded as evidence of intrinsic, chaotic behavior. We show that incorporation of dynamical noise into minimal neuron models of square-wave bursting (either conductance-based or abstract) produces signatures akin to those observed in biological examples, without the need for fine tuning of parameters or ad hoc constructions for inducing chaotic activity. The form of the stochastic term is not strongly constrained and can approximate several possible sources of noise, e.g., random channel gating or synaptic bombardment. The cornerstone of this signature generation mechanism is the rich, transient, but deterministic dynamics inherent in the square-wave (saddle-node and homoclinic) mode of neuronal bursting. We show that noise causes the dynamics to populate a complex transient scaffolding or skeleton in state space, even for models that (without added noise) generate only periodic activity (whether in bursting or tonic spiking mode).
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Affiliation(s)
- Bóris Marin
- Instituto de Física, Universidade de São Paulo, Brazil
| | | | - Robert C Elson
- Institute for Nonlinear Science, University of California, San Diego, California 92093-0402, USA
| | - Eduardo Colli
- Instituto de Matemática e Estatística, Universidade de São Paulo, Brazil
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Grégoire-Lacoste F, Jacquemet V, Vinet A. Bifurcations, sustained oscillations and torus bursting involving ionic concentrations dynamics in a canine atrial cell model. Math Biosci 2014; 250:10-25. [PMID: 24530894 DOI: 10.1016/j.mbs.2014.01.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Revised: 01/28/2014] [Accepted: 01/31/2014] [Indexed: 11/28/2022]
Abstract
Atrial fibrillation is a disorganization of the electrical propagation in the atria often initiated by ectopic beats. This spontaneous activity might be associated with the appearance of sustained oscillations in some portion of the tissue. Adrenergic stress and specific gene polymorphisms known to promote atrial fibrillation are notably related to calcium and potassium channel conductances. We performed codimension-one and two bifurcation analysis along these conductances in an ionic canine atrial myocyte model. Two Hopf bifurcations were found, related to two distinct mechanisms: (1) a fast calcium gating-driven oscillator, and (2) a slow concentration-driven oscillator. These two mechanisms interact through a double Hopf bifurcation (HH) in a neighborhood of which a torus (Neimark-Sacker) bifurcation leads to bursting. A complex codimension-two theoretical scenario was identified around HH, through systematic comparison with the attractors found numerically. The concentration oscillator was further decomposed to reveal the minimal oscillating subnetwork, in which the Na(+)/Ca(2+) exchanger plays a prominent role.
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Affiliation(s)
- François Grégoire-Lacoste
- Institut de Génie Biomédical, Department of Physiology, Faculty of Medicine, Université de Montréal, CP 6128, Succ Centre-Ville, Montréal H3C 3J7, Canada
| | - Vincent Jacquemet
- Institut de Génie Biomédical, Department of Physiology, Faculty of Medicine, Université de Montréal, CP 6128, Succ Centre-Ville, Montréal H3C 3J7, Canada; Centre de Recherche, Hôpital du Sacré-Coeur de Montréal, Canada
| | - Alain Vinet
- Institut de Génie Biomédical, Department of Physiology, Faculty of Medicine, Université de Montréal, CP 6128, Succ Centre-Ville, Montréal H3C 3J7, Canada; Centre de Recherche, Hôpital du Sacré-Coeur de Montréal, Canada.
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