The Impact of Climate Change on the Resistance of Rice Near-Isogenic Lines with Resistance Genes Against Brown Planthopper

Origins of Susceptibility to Insect Herbivores in High-Yielding Hybrid and Inbred Rice Genotypes

Several studies have reported higher damage from insect herbivores to hybrid compared to inbred (pure line) rice. We used a collection of 20 hybrid and 12 inbred genotypes from diverse origins to test the hypotheses that hybrid rice susceptibility is due to (a) the hybrid plant type and/or (b) rice phylogeny. We challenged the genotypes with Nilaparvata lugans (BPH), Sogatella furcifera (WBPH) and Scirpophaga incertulas (YSB) in greenhouse and screenhouse bioassays and monitored herbivores in field plots. We used single nucleotide polymorphic (SNP) markers to assess genetic similarities between the genotypes and found that the hybrids and inbreds formed two distinct clusters regardless of origin. In the screenhouse, hybrids were more susceptible than inbreds to YSB; however, resistant hybrids and susceptible inbreds were also apparent from both the screenhouse and field plots. Plant biomass was the best predictor of susceptibility to YSB. Plant origin had a greater effect than plant type on susceptibility to BPH and WBPH. WBPH was the most abundant planthopper in the field plots where numbers were highly correlated with planthopper fitness in the greenhouse bioassays. Our results provide evidence that high-yielding hybrids that are relatively resistant to herbivores can be achieved through careful breeding. The avoidance of susceptible genotypes during breeding should remain a key element of integrated rice pest management.

Pyramiding BPH genes in rice maintains resistance against the brown planthopper under climate change

BACKGROUND

Nilaparvata lugens (brown planthopper; BPH) is a significant rice pest in Asia, causing substantial yield losses. Pyramiding BPH resistance genes with diverse resistance traits into rice cultivars is an effective strategy for pest management. However, the response of pyramiding combinations to environmental changes remains unclear. To address this knowledge gap, we investigated three pyramiding rice lines (BPH2 + 32, BPH9 + 32, and BPH18 + 32) in the context of varying climate change conditions, ensuring sufficient N. lugens-rice interactions. Thus, we set three environmental conditions [30/25 °C (day/night) with 500 ppm CO2 concentration, 32/27 °C (day/night) with 600 ppm CO2 concentration, and 35/30 °C (day/night) with 1000 ppm CO2 concentration].

RESULTS

All three pyramiding rice lines maintained the insect resistant ability under the three environmental settings. In particular, the BPH18 + 32 rice line exhibited stronger antibiotic and antixenosis effects against N. lugens. In addition, BPH18 + 32 rice line had better shoot resilience under N. lugens infestation, whereas the performance of the other two selected pyramiding rice lines varied. Thus, although BPH2, BPH9, and BPH18 represent three alleles at the same locus, their resistance levels against N. lugens may vary under distinct climate change scenarios, as evidenced by the performance of N. lugens on the three pyramiding rice lines.

CONCLUSION

Our findings indicate that all three tested pyramiding rice lines maintained their insect resistance in the face of diverse climate change scenarios. However, these lines exhibited varied repellent responses and resilience capacities in response to climate change. Thus, the combination of pyramiding genes needs to be considered for future breeding programs. © 2023 Society of Chemical Industry.

Available cloned genes and markers for genetic improvement of biotic stress resistance in rice

Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other methods such as chemical spraying. Fast deployment of the available and suitable genes/alleles in local elite varieties through marker-assisted selection (MAS) is crucial for stable high-yield rice production. In this review, we focused on consolidating all the available cloned genes/alleles conferring resistance against rice pathogens (virus, bacteria, and fungus) and insect pests, the corresponding donor materials, and the DNA markers linked to the identified genes. To date, 48 genes (independent loci) have been cloned for only major biotic stresses: seven genes for brown planthopper (BPH), 23 for blast, 13 for bacterial blight, and five for viruses. Physical locations of the 48 genes were graphically mapped on the 12 rice chromosomes so that breeders can easily find the locations of the target genes and distances among all the biotic stress resistance genes and any other target trait genes. For efficient use of the cloned genes, we collected all the publically available DNA markers (~500 markers) linked to the identified genes. In case of no available cloned genes yet for the other biotic stresses, we provided brief information such as donor germplasm, quantitative trait loci (QTLs), and the related papers. All the information described in this review can contribute to the fast genetic improvement of biotic stress resistance in rice for stable high-yield rice production.

Effect of nitrogen fertilizer on the resistance of rice near-isogenic lines with BPH resistance genes

BACKGROUND

Nitrogen is an essential macronutrient for plant growth and development. Crops with a high nitrogen input usually have high yields. However, outbreaks of brown planthoppers (Nilaparvata lugens; BPH) frequently occur on rice farms with excessive nitrogen inputs. Rice plants carrying BPH resistance genes are used for integrated pest management. Thus, the impact of nitrogen on the resistance of rice near-isogenic lines (NILs) with BPH resistance genes was investigated.

RESULTS

We tested these NILs using a standard seedbox screening test and a modified bulk seedling test under different nitrogen treatments. The amount of nitrogen applied had an impact on the resistance of some lines with BPH resistance genes. In addition, three NILs (NIL-BPH9, NIL-BPH17, and NIL-BPH32) were further examined for antibiosis and antixenosis under varying nitrogen regimes. The N. lugens nymph population growth rate, honeydew excretion, female fecundity, and nymph survival rate on the three NILs were not affected by different nitrogen treatments except the nymph survival rate on NIL-BPH9 and the nymph population growth rate on NIL-BPH17. Furthermore, in the settlement preference test, the preference of N. lugens nymphs for IR24 over NIL-BPH9 or NIL-BPH17 increased under the high-nitrogen regime, whereas the preference of N. lugens nymphs for IR24 over NIL-BPH32 was not affected by the nitrogen treatments.

CONCLUSIONS

Our results indicated that the resistance of three tested NILs did not respond to different nitrogen regimes and that NIL-BPH17 exerted the most substantial inhibitory effect on N. lugens growth and development.

Climate Variability Shifting Immigrated Rice Planthoppers in Taiwan

Rice planthoppers are common insect pests in Taiwan, and they have caused significant damage in the past. The majority of rice planthoppers have seen a drastic decline in their population since the mid-2000s, a trend that has anecdotally attributed to widespread and better pest control, as well as improved rice cultivation management. By analyzing 40 years of the airborne net trap data of rice planthoppers collected in Southwest Taiwan, it was found that the pests’ yearly population, computed with a logarithmic transformation, resembles a signature climate pattern in the global oceans with a robust multi-decadal variability. An ocean temperature-based index derived from the patterns of multi-decadal variability shows a marked resemblance with the population change of common rice planthoppers, with overlapping peaks during the 1990–2010 period. The climate dynamics associated with the regional weather pattern in the vicinity of Taiwan are discussed. Phase reversal of this multi-decadal climate variability in the future may produce favorable climatic conditions for the rice planthopper population to increase back to its historical levels.

Nitrogenous Fertilizer Reduces Resistance but Enhances Tolerance to the Brown Planthopper in Fast-Growing, Moderately Resistant Rice

The brown planthopper, Nilaparvata lugens (Stål), is a key challenge to rice production in Asia. Outbreaks of planthoppers are associated with excessive fertilizer applications; consequently, we examined planthopper interactions with susceptible, tolerant and resistant varieties of rice under varying levels of soil nitrogen in a greenhouse experiment. We compared planthopper fitness (survival × reproduction) and plant tolerance (functional plant loss index) for 16 varieties at 0, 80 and 150 Kg added nitrogen ha^-1. The planthoppers grew larger, developed more quickly and laid more eggs on susceptible varieties, compared with the resistant and tolerant varieties. Moreover, soil nitrogen generally increased planthopper fitness on resistant varieties, but relative resistance was maintained. Functional plant loss was highest among the susceptible varieties, but weight and growth rate reductions per mg of planthopper were often highest in the tolerant varieties. Tolerance was associated with large, fast-growing plants, with at least moderate resistance to the planthopper. Susceptibility was associated with a small size and/or an absence of resistance genes. Our results suggested that early-tillering rice plants can be both resistant and tolerant to the brown planthopper, but cannot be both susceptible and tolerant of planthoppers at high densities. This indicates that at least moderate resistance is required for tolerance against this herbivore. Furthermore, although dwarf varieties had a low tolerance of planthoppers, they could express resistance through functioning resistance genes.