Rice Defense Responses Orchestrated by Oral Bacteria of the Rice Striped Stem Borer, Chilo suppressalis

Rice responds to Spodoptera frugiperda infestation via epigenetic regulation of H3K9ac in the jasmonic acid signaling and phenylpropanoid biosynthesis pathways

KEY MESSAGE

This study provided important insights into the complex epigenetic regulatory of H3K9ac-modified genes involved in the jasmonic acid signaling and phenylpropanoid biosynthesis pathways of rice in response to Spodoptera frugiperda infestation. Physiological and molecular mechanisms underlying plant responses to insect herbivores have been well studied, while epigenetic modifications such as histone acetylation and their potential regulation at the genomic level of hidden genes remain largely unknown. Histone 3 lysine 9 acetylation (H3K9ac) is an epigenetic marker widely distributed in plants that can activate gene transcription. In this study, we provided the genome-wide profiles of H3K9ac in rice (Oryza sativa) infested by fall armyworm (Spodoptera frugiperda, FAW) using CUT&Tag-seq and RNA-seq. There were 3269 and 4609 up-regulated genes identified in plants infested by FAW larvae for 3 h and 12 h, respectively, which were mainly enriched in alpha-linolenic acid and phenylpropanoid pathways according to transcriptomic analysis. In addition, CUT&Tag-seq analysis revealed increased H3K9ac in FAW-infested plants, and there were 422 and 543 up-regulated genes enriched with H3K9ac observed at 3 h and 12 h after FAW feeding, respectively. Genes with increased H3K9ac were mainly enriched in the transcription start site (TSS), suggesting that H3K9ac is related to gene transcription. Integrative analysis of both RNA-seq and CUT&Tag-seq data showed that up-expressed genes with H3K9ac enrichment were mainly involved in the jasmonic acid (JA) and phenylpropanoid pathways. Particularly, two spermidine hydroxycinnamoyl transferase genes SHT1 and SHT2 involved in phenolamide biosynthesis were highly modified by H3K9ac in FAW-infested plants. Furthermore, the Ossht1 and Ossht2 transgenic lines exhibited decreased resistance against FAW larvae. Our findings suggest that rice responds to insect herbivory via H3K9ac epigenetic regulation in the JA signaling and phenolamide biosynthesis pathways.

Early transcriptomic responses of rice leaves to herbivory by Spodoptera frugiperda

During herbivory, chewing insects deposit complex oral secretions (OS) onto the plant wound. Understanding how plants respond to the different cues of herbivory remains an active area of research. In this study, we used an herbivory-mimick experiment to investigate the early transcriptional response of rice plants leaves to wounding, OS, and OS microbiota from Spodoptera frugiperda larvae. Wounding induced a massive early response associated to hormones such as jasmonates. This response switched drastically upon OS treatment indicating the activation of OS specific pathways. When comparing native and dysbiotic OS treatments, we observed few gene regulation. This suggests that in addition to wounding the early response in rice is mainly driven by the insect compounds of the OS rather than microbial. However, microbiota affected genes encoding key phytohormone synthesis enzymes, suggesting an additional modulation of plant response by OS microbiota.

Herbivory by Striped Stem Borer Triggers Polyamine Accumulation in Host Rice Plants to Promote Its Larval Growth

Polyamines (PAs) are ubiquitous low-molecular-weight aliphatic polycations in all living organisms, which are crucial for plant response to abiotic and biotic stresses. The role of PAs in plant disease resistance has been well documented. However, their involvement in plant-pest interactions remains unclear. Here, the role of PAs in rice against striped stem borer (SSB, Chilo suppressalis Walker), a destructive pest in rice production worldwide, was investigated. SSB larval infestation led to a substantial accumulation of free putrescine (Put) in rice seedlings, which was in parallel with an elevated expression of host PA biosynthesis genes Arginine Decarboxylase1 (ADC1) and ADC2. Moreover, SSB larval oral secretion application with wounding further raised the transcripts of ADC1 and ADC2 in rice compared with wounding treatment alone. The larval growth on both rice plants and artificial diet was promoted by the exogenous application of PA and inhibited by a PA biosynthesis inhibitor. On the other hand, the rice defense responses, including polyphenol oxidase (PPO) and peroxidase (POD) activities, as well as protease inhibitor level, were enhanced by a Put supplement and reduced by an ADC inhibitor. Our results indicate that SSB herbivory triggers polyamine accumulation in host rice plants, which is beneficial to SSB in rice-SSB interaction.