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For: Granados Mendoza C, Naumann J, Samain MS, Goetghebeur P, De Smet Y, Wanke S. A genome-scale mining strategy for recovering novel rapidly-evolving nuclear single-copy genes for addressing shallow-scale phylogenetics in Hydrangea. BMC Evol Biol 2015;15:132. [PMID: 26141718 PMCID: PMC4491267 DOI: 10.1186/s12862-015-0416-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Accepted: 06/09/2015] [Indexed: 12/21/2022]  Open
Number Cited by Other Article(s)
1
Dornburg A, Mallik R, Wang Z, Bernal MA, Thompson B, Bruford EA, Nebert DW, Vasiliou V, Yohe LR, Yoder JA, Townsend JP. Placing human gene families into their evolutionary context. Hum Genomics 2022;16:56. [PMID: 36369063 PMCID: PMC9652883 DOI: 10.1186/s40246-022-00429-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 10/12/2022] [Indexed: 11/13/2022]  Open
2
Granados Mendoza C, Martínez Salas EM, Goetghebeur P, Wanke S, Samain MS. Molecular Phylogeny, Character Evolution, and Biogeography of Hydrangea Section Cornidia, Hydrangeaceae. FRONTIERS IN PLANT SCIENCE 2021;12:661522. [PMID: 34267769 PMCID: PMC8276264 DOI: 10.3389/fpls.2021.661522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 05/11/2021] [Indexed: 06/13/2023]
3
Liu L, Tumi L, Suni ML, Arakaki M, Wang ZF, Ge XJ. Draft genome of Puya raimondii (Bromeliaceae), the Queen of the Andes. Genomics 2021;113:2537-2546. [PMID: 34089785 DOI: 10.1016/j.ygeno.2021.05.042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 05/16/2021] [Accepted: 05/31/2021] [Indexed: 01/20/2023]
4
Samain MS, Granados Mendoza C, Martínez Salas EM. On Hydrangea peruviana, an endangered species from Ecuador, and Hydrangea oerstedii, very common in Costa Rica and Panama, and seven threatened Central and South American Hydrangeas, which have been confounded with these. PHYTOKEYS 2021;171:91-153. [PMID: 33584112 PMCID: PMC7854559 DOI: 10.3897/phytokeys.171.56351] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 01/08/2021] [Indexed: 06/12/2023]
5
Tränkner C, Günther K, Sahr P, Engel F, Hohe A. Targeted generation of polyploids in Hydrangea macrophylla through cross-based breeding. BMC Genet 2020;21:147. [PMID: 33287693 PMCID: PMC7720383 DOI: 10.1186/s12863-020-00954-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 11/17/2020] [Indexed: 11/29/2022]  Open
6
Granados-Aguilar X, Granados Mendoza C, Cervantes CR, Montes JR, Arias S. Unraveling Reticulate Evolution in Opuntia (Cactaceae) From Southern Mexico. FRONTIERS IN PLANT SCIENCE 2020;11:606809. [PMID: 33519858 PMCID: PMC7838128 DOI: 10.3389/fpls.2020.606809] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 12/10/2020] [Indexed: 05/20/2023]
7
Debray K, Marie-Magdelaine J, Ruttink T, Clotault J, Foucher F, Malécot V. Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: a case study in the genus Rosa (Rosaceae). BMC Evol Biol 2019;19:152. [PMID: 31340752 PMCID: PMC6657147 DOI: 10.1186/s12862-019-1479-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 07/16/2019] [Indexed: 12/18/2022]  Open
8
Yu X, Yang D, Guo C, Gao L. Plant phylogenomics based on genome-partitioning strategies: Progress and prospects. PLANT DIVERSITY 2018;40:158-164. [PMID: 30740560 PMCID: PMC6137260 DOI: 10.1016/j.pld.2018.06.005] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 06/26/2018] [Accepted: 06/27/2018] [Indexed: 05/26/2023]
9
Evangelista D, Thouzé F, Kohli MK, Lopez P, Legendre F. Topological support and data quality can only be assessed through multiple tests in reviewing Blattodea phylogeny. Mol Phylogenet Evol 2018;128:112-122. [PMID: 29969656 DOI: 10.1016/j.ympev.2018.05.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 05/07/2018] [Accepted: 05/08/2018] [Indexed: 11/18/2022]
10
Liu SH, Edwards CE, Hoch PC, Raven PH, Barber JC. Genome skimming provides new insight into the relationships in Ludwigia section Macrocarpon, a polyploid complex. AMERICAN JOURNAL OF BOTANY 2018;105:875-887. [PMID: 29791715 DOI: 10.1002/ajb2.1086] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 02/14/2018] [Indexed: 05/24/2023]
11
Chau JH, Rahfeldt WA, Olmstead RG. Comparison of taxon-specific versus general locus sets for targeted sequence capture in plant phylogenomics. APPLICATIONS IN PLANT SCIENCES 2018;6:e1032. [PMID: 29732262 PMCID: PMC5895190 DOI: 10.1002/aps3.1032] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Accepted: 12/22/2017] [Indexed: 05/21/2023]
12
Klopfstein S, Massingham T, Goldman N. More on the Best Evolutionary Rate for Phylogenetic Analysis. Syst Biol 2018;66:769-785. [PMID: 28595363 PMCID: PMC5790136 DOI: 10.1093/sysbio/syx051] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Accepted: 05/24/2017] [Indexed: 11/13/2022]  Open
13
Wanke S, Granados Mendoza C, Müller S, Paizanni Guillén A, Neinhuis C, Lemmon AR, Lemmon EM, Samain MS. Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment. Mol Phylogenet Evol 2017;117:111-123. [DOI: 10.1016/j.ympev.2017.05.014] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Revised: 05/12/2017] [Accepted: 05/15/2017] [Indexed: 01/05/2023]
14
Chery JG, Sass C, Specht CD. Development of single-copy nuclear intron markers for species-level phylogenetics: Case study with Paullinieae (Sapindaceae). APPLICATIONS IN PLANT SCIENCES 2017;5:apps1700051. [PMID: 28989824 PMCID: PMC5628028 DOI: 10.3732/apps.1700051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2017] [Accepted: 08/07/2017] [Indexed: 06/07/2023]
15
De Smet Y, De Clerck O, Uemachi T, Granados Mendoza C, Wanke S, Goetghebeur P, Samain MS. Multilocus coalescent species delimitation to evaluate traditionally defined morphotypes in Hydrangea sect. Asperae (Hydrangeaceae). Mol Phylogenet Evol 2017;114:415-425. [PMID: 28606445 DOI: 10.1016/j.ympev.2017.05.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Revised: 05/23/2017] [Accepted: 05/23/2017] [Indexed: 11/29/2022]
16
Frenzke L, Goetghebeur P, Neinhuis C, Samain MS, Wanke S. Evolution of Epiphytism and Fruit Traits Act Unevenly on the Diversification of the Species-Rich Genus Peperomia (Piperaceae). FRONTIERS IN PLANT SCIENCE 2016;7:1145. [PMID: 27555851 PMCID: PMC4977276 DOI: 10.3389/fpls.2016.01145] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Accepted: 07/18/2016] [Indexed: 05/23/2023]
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