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Zhu Y, Deng T, Qiao M, Tang D, Huang X, Deng W, Liu H, Li R, Lan T. Comparison of genetic characteristics between captive and wild giant pandas based on 13 mitochondrial coding genes. Mol Biol Rep 2022; 49:4901-4908. [PMID: 35534585 DOI: 10.1007/s11033-022-07350-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 03/09/2022] [Indexed: 11/24/2022]
Abstract
BACKGROUND Research on genetic diversity based on mitochondrial DNA of giant pandas mainly focused on a single marker or a few genes. OBJECTIVE To provide a more comprehensive assessment of the genetic diversity on giant pandas based on 13 mitochondrial protein coding genes. METHODS We assembled 13 protein coding genes in the mitochondrial genome of the giant panda based on the whole genome sequencing data, including ND1, ND2, COX1, COX2, ATP8, ATP6, COX3, ND3, ND4L, ND4, ND5, ND6 and Cyt b. RESULTS We successfully obtained long sequence of 11,416 base pairs with all 13 genes for 110 giant panda individual, accounting for 67.93% in length of the mitochondrial reference genome. Haplotype diversity was 0.9518 ± 0.009 and nucleotide diversity (π) was 0.00157 ± 0.00014. We detected three new haplotypes, including GPC10 and GPC21 for the CR sequence and GPB12 for the Cyt b gene. CONCLUSION These multi-gene sequences provided more genetic variable information to compare captive and wild giant panda population.
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Affiliation(s)
- Yixin Zhu
- State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Tao Deng
- Key Laboratory of State Forestry and Grassland Administration (State Park Administration) on Conservation Biology of Rare Animals in the Giant Panda National Park, China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
- China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
| | - Maiju Qiao
- Key Laboratory of State Forestry and Grassland Administration (State Park Administration) on Conservation Biology of Rare Animals in the Giant Panda National Park, China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
- China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
| | - Dan Tang
- Key Laboratory of State Forestry and Grassland Administration (State Park Administration) on Conservation Biology of Rare Animals in the Giant Panda National Park, China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
- China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
| | - Xiaoyu Huang
- Key Laboratory of State Forestry and Grassland Administration (State Park Administration) on Conservation Biology of Rare Animals in the Giant Panda National Park, China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
- China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
| | - Wenwen Deng
- Key Laboratory of State Forestry and Grassland Administration (State Park Administration) on Conservation Biology of Rare Animals in the Giant Panda National Park, China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
- China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China
| | - Huan Liu
- State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China
- Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, China
| | - Rengui Li
- Key Laboratory of State Forestry and Grassland Administration (State Park Administration) on Conservation Biology of Rare Animals in the Giant Panda National Park, China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China.
- China Conservation and Research Center for the Giant Panda, Dujiangyan, 611830, China.
| | - Tianming Lan
- State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
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Liu Y, Li Y, Hou R, Cai Z, Wang D, Chen J, Li F, Chen Y, An J. Isolation, culture, and characterization of cells derived from giant panda (Ailuropoda melanoleuca) semen. In Vitro Cell Dev Biol Anim 2021; 57:381-385. [PMID: 33928488 DOI: 10.1007/s11626-021-00579-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 04/05/2021] [Indexed: 11/29/2022]
Affiliation(s)
- Yuliang Liu
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China.,Sichuan Academy of Giant Panda, Province, Chengdu, 610000, Sichuan, China
| | - Yuan Li
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China
| | - Rong Hou
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China.,Sichuan Academy of Giant Panda, Province, Chengdu, 610000, Sichuan, China
| | - Zhigang Cai
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China.,Sichuan Academy of Giant Panda, Province, Chengdu, 610000, Sichuan, China
| | - Donghui Wang
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China.,Sichuan Academy of Giant Panda, Province, Chengdu, 610000, Sichuan, China
| | - Jiasong Chen
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China
| | - Feiping Li
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China
| | - Yijiao Chen
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China.,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China
| | - Junhui An
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Province, Chengdu, 610081, Sichuan, China. .,Chengdu Research Base of Giant Panda Breeding, Province, Chengdu, 610081, Sichuan, China. .,Sichuan Academy of Giant Panda, Province, Chengdu, 610000, Sichuan, China.
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