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Slinning MS, Nthiga TM, Eichner C, Khadija S, Rome LH, Nilsen F, Dondrup M. Major vault protein is part of an extracellular cement material in the Atlantic salmon louse (Lepeophtheirus salmonis). Sci Rep 2024; 14:15240. [PMID: 38956386 PMCID: PMC11219742 DOI: 10.1038/s41598-024-65683-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 06/24/2024] [Indexed: 07/04/2024] Open
Abstract
Major vault protein (MVP) is the main component of the vault complex, which is a highly conserved ribonucleoprotein complex found in most eukaryotic organisms. MVP or vaults have previously been found to be overexpressed in multidrug-resistant cancer cells and implicated in various cellular processes such as cell signaling and innate immunity. The precise function of MVP is, however, poorly understood and its expression and probable function in lower eukaryotes are not well characterized. In this study, we report that the Atlantic salmon louse expresses three full-length MVP paralogues (LsMVP1-3). Furthermore, we extended our search and identified MVP orthologues in several other ecdysozoan species. LsMVPs were shown to be expressed in various tissues at both transcript and protein levels. In addition, evidence for LsMVP to assemble into vaults was demonstrated by performing differential centrifugation. LsMVP was found to be highly expressed in cement, an extracellular material produced by a pair of cement glands in the adult female salmon louse. Cement is important for the formation of egg strings that serve as protective coats for developing embryos. Our results imply a possible novel function of LsMVP as a secretory cement protein. LsMVP may play a role in structural or reproductive functions, although this has to be further investigated.
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Affiliation(s)
- Malene Skuseth Slinning
- Sea Lice Research Centre (SLRC), Department of Biological Sciences, University of Bergen, Pb. 7803, 5020, Bergen, Norway
| | - Thaddaeus Mutugi Nthiga
- Sea Lice Research Centre (SLRC), Department of Biological Sciences, University of Bergen, Pb. 7803, 5020, Bergen, Norway
| | - Christiane Eichner
- Sea Lice Research Centre (SLRC), Department of Biological Sciences, University of Bergen, Pb. 7803, 5020, Bergen, Norway
| | - Syeda Khadija
- Department of Biological Chemistry, David Geffen School of Medicine and the California NanoSystems Institute, University of California Los Angeles, Los Angeles, CA, 90095, USA
| | - Leonard H Rome
- Department of Biological Chemistry, David Geffen School of Medicine and the California NanoSystems Institute, University of California Los Angeles, Los Angeles, CA, 90095, USA
| | - Frank Nilsen
- Sea Lice Research Centre (SLRC), Department of Biological Sciences, University of Bergen, Pb. 7803, 5020, Bergen, Norway
| | - Michael Dondrup
- SLRC, Computational Biology Unit (CBU), Department of Informatics, University of Bergen, Pb. 7803, 5020, Bergen, Norway.
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2
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Schultzhaus J, Hervey J, Fears K, Spillmann C. Proteomic comparison of the organic matrices from parietal and base plates of the acorn barnacle Amphibalanus amphitrite. Open Biol 2024; 14:230246. [PMID: 38806147 PMCID: PMC11293433 DOI: 10.1098/rsob.230246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 12/13/2023] [Accepted: 02/29/2024] [Indexed: 05/30/2024] Open
Abstract
Acorn barnacles are efficient colonizers on a wide variety of marine surfaces. As they proliferate on critical infrastructure, their settlement and growth have deleterious effects on performance. To address acorn barnacle biofouling, research has focused on the settlement and adhesion processes with the goal of informing the development of novel coatings. This effort has resulted in the discovery and characterization of several proteins found at the adhesive substrate interface, i.e. cement proteins, and a deepened understanding of the function and composition of the biomaterials within this region. While the adhesive properties at the interface are affected by the interaction between the proteins, substrate and mechanics of the calcified base plate, little attention has been given to the interaction between the proteins and the cuticular material present at the substrate interface. Here, the proteome of the organic matrix isolated from the base plate of the acorn barnacle Amphibalanus amphitrite is compared with the chitinous and proteinaceous matrix embedded within A. amphitrite parietal plates. The objective was to gain an understanding of how the basal organic matrix may be specialized for adhesion via an in-depth comparative proteome analysis. In general, the majority of proteins identified in the parietal matrix were also found in the basal organic matrix, including nearly all those grouped in classes of cement proteins, enzymes and pheromones. However, the parietal organic matrix was enriched with cuticle-associated proteins, of which ca 30% of those identified were unique to the parietal region. In contrast, ca 30-40% of the protease inhibitors, enzymes and pheromones identified in the basal organic matrix were unique to this region. Not unexpectedly, nearly 50% of the cement proteins identified in the basal region were significantly distinct from those found in the parietal region. The wider variety of identified proteins in the basal organic matrix indicates a greater diversity of biological function in the vicinity of the substrate interface where several processes related to adhesion, cuticle formation and expansion of the base synchronize to play a key role in organism survival.
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Affiliation(s)
- Janna Schultzhaus
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, DC, USA
| | - Judson Hervey
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, DC, USA
| | - Kenan Fears
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, DC, USA
| | - Christopher Spillmann
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, DC, USA
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3
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Lee WK, Chan BKK, Kim JY, Ju SJ, Kim SJ. Comparative genomics reveals the dynamic evolutionary history of cement protein genes of barnacles from intertidal to deep-sea hydrothermal vents. Mol Ecol Resour 2024; 24:e13895. [PMID: 37955198 DOI: 10.1111/1755-0998.13895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Revised: 10/16/2023] [Accepted: 10/30/2023] [Indexed: 11/14/2023]
Abstract
Thoracican barnacles are a diverse group of marine organisms for which the availability of genome assemblies is currently limited. In this study, we sequenced the genomes of two neolepadoid species (Ashinkailepas kermadecensis, Imbricaverruca yamaguchii) from hydrothermal vents, in addition to two intertidal species. Genome sizes ranged from 481 to 1054 Mb, with repetitive sequence contents of 21.2% to 50.7%. Concordance rates of orthologs and heterozygosity rates were between 82.4% and 91.7% and between 1.0% and 2.1%, respectively, indicating high genetic diversity and heterozygosity. Based on phylogenomic analyses, we revised the nomenclature of cement genes encoding cement proteins that are not homologous to any known proteins. The major cement gene, CP100A, was found in all thoracican species, including vent-associated neolepadoids, and was hypothesised to be essential for thoracican settlement. Duplicated genes, CP100B and CP100C, were found only in balanids, suggesting potential functional redundancy or acquisition of new functions associated with the calcareous base. An ancestor of CP52 genes was duplicated dynamically among lepadids, pollicipedids with multiple copies on a single scaffold, and balanids with multiple sequential repeats of the conserved regions, but no CP52 genes were found in neolepadoids, providing insights into cement gene evolution among thoracican lineages. This study enhances our understanding of the adhesion mechanisms of thoracicans in underwater environments. The newly sequenced genomes provide opportunities for studying their evolution and ecology, shedding light on their adaptation to diverse marine environments, and contributing to our knowledge of barnacle biology with valuable genomic resources for further studies in this field.
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Affiliation(s)
- Won-Kyung Lee
- Division of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea
- Division of EcoScience, Ewha Womans University, Seoul, Korea
| | - Benny K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Jae-Yoon Kim
- Division of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea
| | - Se-Jong Ju
- Marine Resources & Environment Research Division, Korea Institute of Ocean Science and Technology, Busan, Korea
| | - Se-Joo Kim
- Division of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea
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4
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Wong YH, Dreyer N, Liu H, Lan Y, Chen JJ, Sun J, Zhang WP, Qian PY, Chan BKK. Gene co-option, duplication and divergence of cement proteins underpin the evolution of bioadhesives across barnacle life histories. Mol Ecol 2023; 32:5071-5088. [PMID: 37584177 DOI: 10.1111/mec.17084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/30/2023] [Accepted: 07/12/2023] [Indexed: 08/17/2023]
Abstract
Acquisition of new genes often results in the emergence of novel functions and is a key step in lineage-specific adaptation. As a group of sessile crustaceans, barnacles establish permanent attachment through initial cement secretion at the larval phase followed by continuous cement secretion in juveniles and adults. However, the origins and evolution of barnacle larval and adult cement proteins remain poorly understood. By performing microdissection of larval cement glands, transcriptome and shotgun proteomics and immunohistochemistry validation, we identified 30 larval and 27 adult cement proteins of the epibiotic turtle barnacle Chelonibia testudinaria, of which the majority are stage- and barnacle-specific. While only two proteins, SIPC and CP100K, were expressed in both larvae and adults, detection of protease inhibitors and the cross-linking enzyme lysyl oxidase paralogs in larvae and adult cement. Other barnacle-specific cement proteins such as CP100k and CP52k likely share a common origin dating back at least to the divergence of Rhizocephala and Thoracica. Different CP52k paralogues could be detected in larval and adult cement, suggesting stage-specific cement proteins may arise from duplication followed by changes in expression timing of the duplicates. Interestingly, the biochemical properties of larval- and adult-specific CP52k paralogues exhibited remarkable differences. We conclude that barnacle larval and adult cement systems evolved independently, and both emerged from co-option of existing genes and de novo formation, duplication and functional divergence of lineage-specific cement protein genes. Our findings provide important insights into the evolutionary mechanisms of bioadhesives in sessile marine invertebrates.
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Affiliation(s)
- Yue Him Wong
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Niklas Dreyer
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Taiwan International Graduate Program, TIGP, Biodiversity, Academia Sinica, Taipei, Taiwan
- Department of Life Sciences, National Taiwan Normal University, Taipei, Taiwan
- Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
| | - HaoCheng Liu
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Yi Lan
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China
| | - Jamie J Chen
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Jin Sun
- Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, China
| | - Wei-Peng Zhang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Pei-Yuan Qian
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China
| | - Benny K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
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5
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Liu X, Jin H, Xu G, Lai R, Wang A. Bioactive Peptides from Barnacles and Their Potential for Antifouling Development. Mar Drugs 2023; 21:480. [PMID: 37755093 PMCID: PMC10532818 DOI: 10.3390/md21090480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 08/26/2023] [Accepted: 08/29/2023] [Indexed: 09/28/2023] Open
Abstract
Barnacles, a prevalent fouler organism in intertidal zones, has long been a source of annoyance due to significant economic losses and ecological impacts. Numerous antifouling approaches have been explored, including extensive research on antifouling chemicals. However, the excessive utilization of small-molecule chemicals appears to give rise to novel environmental concerns. Therefore, it is imperative to develop new strategies. Barnacles exhibit appropriate responses to environmental challenges with complex physiological processes and unique sensory systems. Given the assumed crucial role of bioactive peptides, an increasing number of peptides with diverse activities are being discovered in barnacles. Fouling-related processes have been identified as potential targets for antifouling strategies. In this paper, we present a comprehensive review of peptides derived from barnacles, aiming to underscore their significant potential in the quest for innovative solutions in biofouling prevention and drug discovery.
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Affiliation(s)
- Xuan Liu
- Center for Evolution and Conservation Biology, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; (X.L.); (H.J.); (G.X.); (R.L.)
| | - Hui Jin
- Center for Evolution and Conservation Biology, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; (X.L.); (H.J.); (G.X.); (R.L.)
| | - Gaochi Xu
- Center for Evolution and Conservation Biology, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; (X.L.); (H.J.); (G.X.); (R.L.)
| | - Ren Lai
- Center for Evolution and Conservation Biology, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; (X.L.); (H.J.); (G.X.); (R.L.)
- Key Laboratory of Bioactive Peptides of Yunnan Province, KIZ-CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, National Resource Center for Non-Human Primates, Kunming Primate Research Center, National Research Facility for Phenotypic & Genetic Analysis of Model Animals (Primate Facility), Sino-African Joint Research Center and Engineering Laboratory of Peptides, Kunming Institute of Zoology, Kunming 650107, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Aili Wang
- Center for Evolution and Conservation Biology, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; (X.L.); (H.J.); (G.X.); (R.L.)
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6
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Xu Z, Liu Z, Zhang C, Xu D. Advance in barnacle cement with high underwater adhesion. J Appl Polym Sci 2022. [DOI: 10.1002/app.52894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Zhenzhen Xu
- Beijing Institute of Basic Medical Sciences Beijing China
- College of Pharmaceutical Sciences Hebei University Baoding China
| | - Zhongcheng Liu
- College of Pharmaceutical Sciences Hebei University Baoding China
| | - Chao Zhang
- Beijing Institute of Basic Medical Sciences Beijing China
| | - Donggang Xu
- Beijing Institute of Basic Medical Sciences Beijing China
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7
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Liang C, Bi X, Gan K, Wu J, He G, Xue B, Ye Z, Cao Y, Hu B. Short Peptides Derived from a Block Copolymer-like Barnacle Cement Protein Self-Assembled into Diverse Supramolecular Structures. Biomacromolecules 2022; 23:2019-2030. [PMID: 35482604 DOI: 10.1021/acs.biomac.2c00031] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Peptides capable of self-assembling into different supramolecular structures have potential applications in a variety of areas. The biomimetic molecular design offers an important avenue to discover novel self-assembling peptides. Despite this, a lot of biomimetic self-assembling peptides have been reported so far; to continually expand the scope of peptide self-assembly, it is necessary to find out more novel self-assembling peptides. Barnacle cp19k, a key underwater adhesive protein, shows special block copolymer-like characteristics and diversified self-assembly properties, providing an ideal template for biomimetic peptide design. In this study, inspired by Balanus albicostatus cp19k (Balcp19k), we rationally designed nine biomimetic peptides (P1-P9) and systematically studied their self-assembly behaviors for the first time. Combining microscale morphology observations and secondary structure analyses, we found that multiple biomimetic peptides derived from the central region and the C-terminus of Balcp19k form distinct supramolecular structures via different self-assembly mechanisms under acidic conditions. Specifically, P9 self-assembles into typical amyloid fibers. P7, which resembles ionic self-complementary peptides by containing nonstrictly alternating hydrophobic and charged amino acids, self-assembles into uniform, discrete nanofibers. P6 with amphipathic features forms twisted nanoribbons. Most interestingly, P4 self-assembles to form helical nanofibers and novel ring-shaped microstructures, showing unique self-assembly behaviors. Apart from their self-assembly properties, these peptides showed good cytocompatibility and demonstrated promising applications in biomedical areas. Our results expanded the repertoire of self-assembling peptides and provided new insights into the structure-function relationship of barnacle cp19k.
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Affiliation(s)
- Chao Liang
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha 410073, China
| | - Xiangyun Bi
- Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China
| | - Kesheng Gan
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha 410073, China
| | - Jizhe Wu
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha 410073, China
| | - Guangxiao He
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China
| | - Bin Xue
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China
| | - Zonghuang Ye
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha 410073, China
| | - Yi Cao
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics, Nanjing University, Nanjing 210093, China.,Institute for Brain Sciences, Nanjing University, Nanjing 210093, China.,Chemistry and Biomedicine Innovation Center, Nanjing University, Nanjing 210093, China.,Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China
| | - Biru Hu
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha 410073, China
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8
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Gan K, Liang C, Bi X, Wu J, Ye Z, Wu W, Hu B. Adhesive Materials Inspired by Barnacle Underwater Adhesion: Biological Principles and Biomimetic Designs. Front Bioeng Biotechnol 2022; 10:870445. [PMID: 35573228 PMCID: PMC9097139 DOI: 10.3389/fbioe.2022.870445] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Accepted: 03/22/2022] [Indexed: 01/19/2023] Open
Abstract
Wet adhesion technology has potential applications in various fields, especially in the biomedical field, yet it has not been completely mastered by humans. Many aquatic organisms (e.g., mussels, sandcastle worms, and barnacles) have evolved into wet adhesion specialists with excellent underwater adhesion abilities, and mimicking their adhesion principles to engineer artificial adhesive materials offers an important avenue to address the wet adhesion issue. The crustacean barnacle secretes a proteinaceous adhesive called barnacle cement, with which they firmly attach their bodies to almost any substrate underwater. Owing to the unique chemical composition, structural property, and adhesion mechanism, barnacle cement has attracted widespread research interest as a novel model for designing biomimetic adhesive materials, with significant progress being made. To further boost the development of barnacle cement–inspired adhesive materials (BCIAMs), it is necessary to systematically summarize their design strategies and research advances. However, no relevant reviews have been published yet. In this context, we presented a systematic review for the first time. First, we introduced the underwater adhesion principles of natural barnacle cement, which lay the basis for the design of BCIAMs. Subsequently, we classified the BCIAMs into three major categories according to the different design strategies and summarized their research advances in great detail. Finally, we discussed the research challenge and future trends of this field. We believe that this review can not only improve our understanding of the molecular mechanism of barnacle underwater adhesion but also accelerate the development of barnacle-inspired wet adhesion technology.
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Affiliation(s)
- Kesheng Gan
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China
| | - Chao Liang
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China
- *Correspondence: Chao Liang, ; Biru Hu,
| | - Xiangyun Bi
- Department of Neurology, Xiangya Hospital, Central South University, Changsha, China
| | - Jizhe Wu
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China
| | - Zonghuang Ye
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China
| | - Wenjian Wu
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China
| | - Biru Hu
- College of Liberal Arts and Sciences, National University of Defense Technology, Changsha, China
- *Correspondence: Chao Liang, ; Biru Hu,
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9
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Lin HC, Wong YH, Sung CH, Chan BKK. Histology and transcriptomic analyses of barnacles with different base materials and habitats shed lights on the duplication and chemical diversification of barnacle cement proteins. BMC Genomics 2021; 22:783. [PMID: 34724896 PMCID: PMC8561864 DOI: 10.1186/s12864-021-08049-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Accepted: 09/14/2021] [Indexed: 11/26/2022] Open
Abstract
Background Barnacles are sessile crustaceans that attach to underwater surfaces using barnacle cement proteins. Barnacles have a calcareous or chitinous membranous base, and their substratum varies from biotic (e.g. corals/sponges) to abiotic surfaces. In this study, we tested the hypothesis that the cement protein (CP) composition and chemical properties of different species vary according to the attachment substrate and/or the basal structure. We examined the histological structure of cement glands and explored the variations in cement protein homologs of 12 barnacle species with different attachment habitats and base materials. Results Cement gland cells in the rocky shore barnacles Tetraclita japonica formosana and Amphibalanus amphitrite are eosinophilic, while others are basophilic. Transcriptome analyses recovered CP homologs from all species except the scleractinian coral barnacle Galkinia sp. A phylogenomic analysis based on sequences of CP homologs did not reflect a clear phylogenetic pattern in attachment substrates. In some species, certain CPs have a remarkable number of paralogous sequences, suggesting that major duplication events occurred in CP genes. The examined CPs across taxa show consistent bias toward particular sets of amino acid. However, the predicted isoelectric point (pI) and hydropathy are highly divergent. In some species, conserved regions are highly repetitive. Conclusions Instead of developing specific cement proteins for different attachment substrata, barnacles attached to different substrata rely on a highly duplicated cementation genetic toolkit to generate paralogous CP sequences with diverse chemical and biochemical properties. This general CP cocktail might be the key genetic feature enabling barnacles to adapt to a wide variety of substrata. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-08049-4.
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Affiliation(s)
- Hsiu-Chin Lin
- Department of Marine Biotechnology and Resources, National Sun Yat-sen University, 80424, Kaohsiung, Taiwan
| | - Yue Him Wong
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Chia-Hsuan Sung
- Planning and Information Division, Fisheries Research Institute, Keelung, Taiwan
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10
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Schultzhaus JN, Hervey WJ, Taitt CR, So CR, Leary DH, Wahl KJ, Spillmann CM. Comparative analysis of stalked and acorn barnacle adhesive proteomes. Open Biol 2021; 11:210142. [PMID: 34404232 PMCID: PMC8371367 DOI: 10.1098/rsob.210142] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Barnacles interest the scientific community for multiple reasons: their unique evolutionary trajectory, vast diversity and economic impact—as a harvested food source and also as one of the most prolific macroscopic hard biofouling organisms. A common, yet novel, trait among barnacles is adhesion, which has enabled a sessile adult existence and global colonization of the oceans. Barnacle adhesive is primarily composed of proteins, but knowledge of how the adhesive proteome varies across the tree of life is unknown due to a lack of genomic information. Here, we supplement previous mass spectrometry analyses of barnacle adhesive with recently sequenced genomes to compare the adhesive proteomes of Pollicipes pollicipes (Pedunculata) and Amphibalanus amphitrite (Sessilia). Although both species contain the same broad protein categories, we detail differences that exist between these species. The barnacle-unique cement proteins show the greatest difference between species, although these differences are diminished when amino acid composition and glycosylation potential are considered. By performing an in-depth comparison of the adhesive proteomes of these distantly related barnacle species, we show their similarities and provide a roadmap for future studies examining sequence-specific differences to identify the proteins responsible for functional differences across the barnacle tree of life.
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Affiliation(s)
- Janna N Schultzhaus
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
| | - William Judson Hervey
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
| | - Chris R Taitt
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
| | - Chris R So
- Chemistry Division, Naval Research Laboratory, Washington, DC, USA
| | - Dagmar H Leary
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
| | - Kathryn J Wahl
- Chemistry Division, Naval Research Laboratory, Washington, DC, USA
| | - Christopher M Spillmann
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
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11
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Li X, Li S, Huang X, Chen Y, Cheng J, Zhan A. Protein-mediated bioadhesion in marine organisms: A review. MARINE ENVIRONMENTAL RESEARCH 2021; 170:105409. [PMID: 34271483 DOI: 10.1016/j.marenvres.2021.105409] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 07/01/2021] [Accepted: 07/03/2021] [Indexed: 06/13/2023]
Abstract
Protein-mediated bioadhesion is one of the crucial physiological processes in marine organisms, by which they can firmly adhere to underwater substrates. Most marine adhesive organisms are biofoulers, causing negative effects on marine ecosystems and huge economic losses to aquaculture and maritime industries. Furthermore, adhesive proteins in these organisms are promising bionic candidates for high-performance artificial materials with great application value. In-depth understanding of the bioadhesion in marine ecosystems is of dual significance for resolving biofouling issue and developing marine bionic products. Here, we review the research progress of protein-mediated bioadhesion in marine organisms. The adhesion processes such as protein biosynthesis and secretion are similar among organisms, but the detailed features such as compositions, structures, and molecular functions of adhesive proteins are distinct. Hydroxylation, glycosylation, and phosphorylation are important post-translational modifications during the processes of adhesion. The contents of some amino acids such as glycine, tyrosine and cysteine involved in underwater adhesion are significantly higher, which is a sequence feature of barnacle cement and mussel foot proteins. The amyloid structures and conserved domains/motifs such as EGF and vWFA distributed in adhesive proteins are involved in the underwater adhesion. In addition, the oxidative cross-linking also plays an important role in marine bioadhesion. Overall, the unique and common features identified for the protein-mediated bioadhesion in diverse marine organisms here provide background information and essential reference for characterizing marine adhesive proteins and associated functional domains, formulating antifouling strategies, and developing novel biomimetic adhesives.
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Affiliation(s)
- Xi Li
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing, 100049, China
| | - Shiguo Li
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing, 100049, China.
| | - Xuena Huang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China
| | - Yiyong Chen
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China
| | - Jiawei Cheng
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing, 100049, China
| | - Aibin Zhan
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing, 100049, China.
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12
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Yan G, Sun J, Wang Z, Qian PY, He L. Insights into the Synthesis, Secretion and Curing of Barnacle Cyprid Adhesive via Transcriptomic and Proteomic Analyses of the Cement Gland. Mar Drugs 2020; 18:E186. [PMID: 32244485 PMCID: PMC7230167 DOI: 10.3390/md18040186] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 03/27/2020] [Accepted: 03/29/2020] [Indexed: 02/06/2023] Open
Abstract
Barnacles represent one of the model organisms used for antifouling research, however, knowledge regarding the molecular mechanisms underlying barnacle cyprid cementation is relatively scarce. Here, RNA-seq was used to obtain the transcriptomes of the cement glands where adhesive is generated and the remaining carcasses of Megabalanus volcano cyprids. Comparative transcriptomic analysis identified 9060 differentially expressed genes, with 4383 upregulated in the cement glands. Four cement proteins, named Mvcp113k, Mvcp130k, Mvcp52k and Mvlcp1-122k, were detected in the cement glands. The salivary secretion pathway was significantly enriched in the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of the differentially expressed genes, implying that the secretion of cyprid adhesive might be analogous to that of saliva. Lysyl oxidase had a higher expression level in the cement glands and was speculated to function in the curing of cyprid adhesive. Furthermore, the KEGG enrichment analysis of the 352 proteins identified in the cement gland proteome partially confirmed the comparative transcriptomic results. These results present insights into the molecular mechanisms underlying the synthesis, secretion and curing of barnacle cyprid adhesive and provide potential molecular targets for the development of environmentally friendly antifouling compounds.
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Affiliation(s)
- Guoyong Yan
- Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China;
- Center for Human Tissues and Organs Degeneration, Institute of Biomedicine and Biotechnology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Jin Sun
- Department of Ocean Science, Division of Life Science and Hong Kong Branch of The Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), The Hong Kong University of Science and Technology, Hong Kong 999077, China; (J.S.); (P.-Y.Q.)
| | - Zishuai Wang
- Department of Computer Science, City University of Hong Kong, Hong Kong 999077, China;
| | - Pei-Yuan Qian
- Department of Ocean Science, Division of Life Science and Hong Kong Branch of The Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), The Hong Kong University of Science and Technology, Hong Kong 999077, China; (J.S.); (P.-Y.Q.)
| | - Lisheng He
- Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya 572000, China;
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13
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Transcriptome analyses suggest a molecular mechanism for the SIPC response of Amphibalanus amphitrite. Biochem Biophys Res Commun 2020; 525:823-829. [PMID: 32164940 DOI: 10.1016/j.bbrc.2020.02.095] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 02/12/2020] [Indexed: 12/18/2022]
Abstract
Barnacles are notorious marine fouling organisms. Their successful attachment to a substrate requires that they search for an appropriate habitat during their cyprid stage. A chemical cue called SIPC (Settlement-Inducing Protein Complex) has been shown to play a key role in the induction of cyprid gregarious settlement; however, the underlying biochemical mechanism remains unclear. Here, RNA-seq was used to examine the gene expression profiles of Amphibalanus amphitrite cyprids in response to SIPC and to identify SIPC-activated intracellular signaling pathways. A total of 389 unigenes were differentially expressed in response to SIPC, and cement protein genes were not among them. KEGG enrichment analysis suggested that SNARE interactions in the vesicular transport pathway were significantly influenced by SIPC treatment, indicating a possible role for SIPC in triggering protein transportation and secretion. Several genes with specific functions in metamorphosis were found among the differentially expressed genes (DEGs). GO (Gene Ontology) enrichment analysis revealed that the DEGs were significantly enriched in enamel mineralization pathways, suggesting that SIPC may also be involved in the activation of mineralization.
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14
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Pjeta R, Lindner H, Kremser L, Salvenmoser W, Sobral D, Ladurner P, Santos R. Integrative Transcriptome and Proteome Analysis of the Tube Foot and Adhesive Secretions of the Sea Urchin Paracentrotus lividus. Int J Mol Sci 2020; 21:ijms21030946. [PMID: 32023883 PMCID: PMC7037938 DOI: 10.3390/ijms21030946] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 01/26/2020] [Accepted: 01/28/2020] [Indexed: 12/25/2022] Open
Abstract
Echinoderms, such as the rock-boring sea urchin Paracentrotus lividus, attach temporarily to surfaces during locomotion using their tube feet. They can attach firmly to any substrate and release from it within seconds through the secretion of unknown molecules. The composition of the adhesive, as well as the releasing secretion, remains largely unknown. This study re-analyzed a differential proteome dataset from Lebesgue et al. by mapping mass spectrometry-derived peptides to a P. lividusde novo transcriptome generated in this study. This resulted in a drastic increase in mapped proteins in comparison to the previous publication. The data were subsequently combined with a differential RNAseq approach to identify potential adhesion candidate genes. A gene expression analysis of 59 transcripts using whole mount in situ hybridization led to the identification of 16 transcripts potentially involved in bioadhesion. In the future these data could be useful for the production of synthetic reversible adhesives for industrial and medical purposes.
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Affiliation(s)
- Robert Pjeta
- Institute of Zoology and Center of Molecular Biosciences Innsbruck, University of Innsbruck, 6020 Innsbruck, Austria; (R.P.); (W.S.)
| | - Herbert Lindner
- Division of Clinical Biochemistry, Biocenter, Innsbruck Medical University, 6020 Innsbruck, Austria; (H.L.); (L.K.)
| | - Leopold Kremser
- Division of Clinical Biochemistry, Biocenter, Innsbruck Medical University, 6020 Innsbruck, Austria; (H.L.); (L.K.)
| | - Willi Salvenmoser
- Institute of Zoology and Center of Molecular Biosciences Innsbruck, University of Innsbruck, 6020 Innsbruck, Austria; (R.P.); (W.S.)
| | - Daniel Sobral
- Departamento Ciências da Vida, Faculdade de Ciências e Tecnologia–Universidade Nova de Lisboa, Campus de Caparica, 2829-516 Caparica, Portugal;
| | - Peter Ladurner
- Institute of Zoology and Center of Molecular Biosciences Innsbruck, University of Innsbruck, 6020 Innsbruck, Austria; (R.P.); (W.S.)
- Correspondence: (P.L.); (R.S.)
| | - Romana Santos
- Centro de Ciências do Mar e do Ambiente, Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
- Correspondence: (P.L.); (R.S.)
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15
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Das S, Patel B. Marine resources and animals in modern biotechnology. Anim Biotechnol 2020. [DOI: 10.1016/b978-0-12-811710-1.00027-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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16
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Fears KP, Barnikel A, Wassick A, Ryou H, Schultzhaus JN, Orihuela B, Scancella JM, So CR, Hunsucker KZ, Leary DH, Swain G, Rittschof D, Spillmann CM, Wahl KJ. Adhesion of acorn barnacles on surface-active borate glasses. Philos Trans R Soc Lond B Biol Sci 2019; 374:20190203. [PMID: 31495306 PMCID: PMC6745471 DOI: 10.1098/rstb.2019.0203] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/06/2019] [Indexed: 12/16/2022] Open
Abstract
Concerns about the bioaccumulation of toxic antifouling compounds have necessitated the search for alternative strategies to combat marine biofouling. Because many biologically essential minerals have deleterious effects on organisms at high concentration, one approach to preventing the settlement of marine foulers is increasing the local concentration of ions that are naturally present in seawater. Here, we used surface-active borate glasses as a platform to directly deliver ions (Na+, Mg2+ and BO43-) to the adhesive interface under acorn barnacles (Amphibalanus (=Balanus) amphitrite). Additionally, surface-active glasses formed reaction layers at the glass-water interface, presenting another challenge to fouling organisms. Proteomics analysis showed that cement deposited on the gelatinous reaction layers is more soluble than cement deposited on insoluble glasses, indicating the reaction layer and/or released ions disrupted adhesion processes. Laboratory experiments showed that the majority (greater than 79%) of adult barnacles re-attached to silica-free borate glasses for 14 days could be released and, more importantly, barnacle larvae did not settle on the glasses. The formation of microbial biofilms in field tests diminished the performance of the materials. While periodic water jetting (120 psi) did not prevent the formation of biofilms, weekly cleaning did dramatically reduce macrofouling on magnesium aluminoborate glass to levels below a commercial foul-release coating. This article is part of the theme issue 'Transdisciplinary approaches to the study of adhesion and adhesives in biological systems'.
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Affiliation(s)
- Kenan P. Fears
- Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Andrew Barnikel
- Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Ann Wassick
- Center for Corrosion and Biofouling Control, Florida Institute of Technology, 150 West University Boulevard, Melbourne, FL 32901, USA
| | - Heonjune Ryou
- Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Janna N. Schultzhaus
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Beatriz Orihuela
- Duke University Marine Laboratory, 135 Duke Marine Laboratory Road, Beaufort, NC 28516, USA
| | - Jenifer M. Scancella
- Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Christopher R. So
- Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Kelli Z. Hunsucker
- Center for Corrosion and Biofouling Control, Florida Institute of Technology, 150 West University Boulevard, Melbourne, FL 32901, USA
| | - Dagmar H. Leary
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Geoffrey Swain
- Center for Corrosion and Biofouling Control, Florida Institute of Technology, 150 West University Boulevard, Melbourne, FL 32901, USA
| | - Daniel Rittschof
- Duke University Marine Laboratory, 135 Duke Marine Laboratory Road, Beaufort, NC 28516, USA
| | - Christopher M. Spillmann
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
| | - Kathryn J. Wahl
- Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, USA
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17
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Schultzhaus JN, Taitt CR, Orihuela B, Smerchansky M, Schultzhaus ZS, Rittschof D, Wahl KJ, Spillmann CM. Comparison of seven methods for DNA extraction from prosomata of the acorn barnacle, Amphibalanus amphitrite. Anal Biochem 2019; 586:113441. [PMID: 31539523 DOI: 10.1016/j.ab.2019.113441] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 09/10/2019] [Accepted: 09/15/2019] [Indexed: 01/06/2023]
Abstract
Next generation sequencing (NGS) technologies can provide an understanding of the molecular processes involved in marine fouling by Amphibalanus spp. barnacles. Here, seven methods for extracting DNA from A. amphitrite prosomata were assessed with respect to recovery, purity and size distribution. Methods incorporating organic extractions generally resulted in low recovery of fragmented DNA. The most promising method was the commercial E.Z.N.A. Blood DNA Mini kit, which provided tens of micrograms of DNA of sufficient molecular weight for use in long-read NGS library preparation. Other kits resulted in DNA preps suitable for short read length NGS platforms.
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Affiliation(s)
- Janna N Schultzhaus
- National Research Council Research Associateship Program, Washington, DC, 20001, USA
| | - Chris R Taitt
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA
| | | | - Madeline Smerchansky
- Naval Research Enterprise Internship Program, American Society for Engineering Education, 1818 N St. NW, Washington, DC, 20036, USA
| | - Zachary S Schultzhaus
- National Research Council Research Associateship Program, Washington, DC, 20001, USA
| | | | - Kathryn J Wahl
- Chemistry Division, Naval Research Laboratory, Washington, DC, 20375, USA
| | - Christopher M Spillmann
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA.
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18
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Schultzhaus JN, Dean SN, Leary DH, Hervey WJ, Fears KP, Wahl KJ, Spillmann CM. Pressure cycling technology for challenging proteomic sample processing: application to barnacle adhesive. Integr Biol (Camb) 2019; 11:235-247. [DOI: 10.1093/intbio/zyz020] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Revised: 05/08/2019] [Accepted: 05/29/2019] [Indexed: 12/23/2022]
Abstract
AbstractSuccessful proteomic characterization of biological material depends on the development of robust sample processing methods. The acorn barnacle Amphibalanus amphitrite is a biofouling model for adhesive processes, but the identification of causative proteins involved has been hindered by their insoluble nature. Although effective, existing sample processing methods are labor and time intensive, slowing progress in this field. Here, a more efficient sample processing method is described which exploits pressure cycling technology (PCT) in combination with protein solvents. PCT aids in protein extraction and digestion for proteomics analysis. Barnacle adhesive proteins can be extracted and digested in the same tube using PCT, minimizing sample loss, increasing throughput to 16 concurrently processed samples, and decreasing sample processing time to under 8 hours. PCT methods produced similar proteomes in comparison to previous methods. Two solvents which were ineffective at extracting proteins from the adhesive at ambient pressure (urea and methanol) produced more protein identifications under pressure than highly polar hexafluoroisopropanol, leading to the identification and description of >40 novel proteins at the interface. Some of these have homology to proteins with elastomeric properties or domains involved with protein-protein interactions, while many have no sequence similarity to proteins in publicly available databases, highlighting the unique adherent processes evolved by barnacles. The methods described here can not only be used to further characterize barnacle adhesive to combat fouling, but may also be applied to other recalcitrant biological samples, including aggregative or fibrillar protein matrices produced during disease, where a lack of efficient sample processing methods has impeded advancement. Data are available via ProteomeXchange with identifier PXD012730.
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Affiliation(s)
- Janna N Schultzhaus
- National Research Council Research Associateship Programs Fellow, Washington, D.C., USA
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, D.C., USA
| | - Scott N Dean
- National Research Council Research Associateship Programs Fellow, Washington, D.C., USA
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, D.C., USA
| | - Dagmar H Leary
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, D.C., USA
| | - W Judson Hervey
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, D.C., USA
| | - Kenan P Fears
- Chemistry Division, Naval Research Laboratory, Washington, D.C., USA
| | - Kathryn J Wahl
- Chemistry Division, Naval Research Laboratory, Washington, D.C., USA
| | - Christopher M Spillmann
- Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, D.C., USA
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19
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Wang C, Schultzhaus JN, Taitt CR, Leary DH, Shriver-Lake LC, Snellings D, Sturiale S, North SH, Orihuela B, Rittschof D, Wahl KJ, Spillmann CM. Characterization of longitudinal canal tissue in the acorn barnacle Amphibalanus amphitrite. PLoS One 2018; 13:e0208352. [PMID: 30532169 PMCID: PMC6287898 DOI: 10.1371/journal.pone.0208352] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Accepted: 11/15/2018] [Indexed: 01/21/2023] Open
Abstract
The morphology and composition of tissue located within parietal shell canals of the barnacle Amphibalanus amphitrite are described. Longitudinal canal tissue nearly spans the length of side shell plates, terminating near the leading edge of the specimen basis in proximity to female reproductive tissue located throughout the peripheral sub-mantle region, i.e. mantle parenchyma. Microscopic examination of stained longitudinal canal sections reveal the presence of cell nuclei as well as an abundance of micron-sized spheroids staining positive for basic residues and lipids. Spheroids with the same staining profile are present extensively in ovarioles, particularly within oocytes which are readily identifiable at various developmental stages. Mass spectrometry analysis of longitudinal canal tissue compared to tissue collected from the mantle parenchyma reveals a nearly 50% overlap of the protein profile with the greatest number of sequence matches to vitellogenin, a glycolipoprotein playing a key role in vitellogenesis–yolk formation in developing oocytes. The morphological similarity and proximity to female reproductive tissue, combined with mass spectrometry of the two tissues, provides compelling evidence that one of several possible functions of longitudinal canal tissue is supporting the female reproductive system of A. amphitrite, thus expanding the understanding of the growth and development of this sessile marine organism.
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Affiliation(s)
- Chenyue Wang
- National Research Council Research Associateship Program, Washington, D.C., United States of America
| | - Janna N. Schultzhaus
- National Research Council Research Associateship Program, Washington, D.C., United States of America
| | - Chris R. Taitt
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America
| | - Dagmar H. Leary
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America
| | - Lisa C. Shriver-Lake
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America
| | - Daniel Snellings
- Naval Research Enterprise Internship Program, Washington, D.C., United States of America
| | - Samantha Sturiale
- Naval Research Enterprise Internship Program, Washington, D.C., United States of America
| | - Stella H. North
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America
| | - Beatriz Orihuela
- Duke University Marine Laboratory, Beaufort, N.C., United States of America
| | - Daniel Rittschof
- Duke University Marine Laboratory, Beaufort, N.C., United States of America
| | - Kathryn J. Wahl
- Chemistry Division, Naval Research Laboratory, Washington, D.C., United States of America
| | - Christopher M. Spillmann
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America
- * E-mail:
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20
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Liang C, Ye Z, Xue B, Zeng L, Wu W, Zhong C, Cao Y, Hu B, Messersmith PB. Self-Assembled Nanofibers for Strong Underwater Adhesion: The Trick of Barnacles. ACS APPLIED MATERIALS & INTERFACES 2018; 10:25017-25025. [PMID: 29990429 DOI: 10.1021/acsami.8b04752] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Developing adhesives that can function underwater remains a major challenge for bioengineering, yet many marine creatures, exemplified as mussels and barnacles, have evolved their unique proteinaceous adhesives for strong wet adhesion. The mechanisms underlying the strong adhesion of these natural adhesive proteins provide rich information for biomimetic efforts. Here, combining atomic force microscopy (AFM) imaging and force spectroscopy, we examine the effects of pH on the self-assembly and adhesive properties of cp19k, a key barnacle underwater adhesive protein. For the first time, we confirm that the bacterial recombinant Balanus albicostatus cp19k (rBalcp19k), which contains no 3,4-dihydroxyphenylalanine (DOPA) or any other amino acids with post-translational modifications, can self-assemble into aggregated nanofibers at acidic pHs. Under moderately acidic conditions, the adhesion strength of unassembled monomeric rBalcp19k on mica is only slightly lower than that of a commercially available mussel adhesive protein mixture, yet the adhesion ability of rBalcp19k monomers decreases significantly at increased pH. In contrast, upon preassembly at acidic and low-salinity conditions, rBalcp19k nanofibers keep stable in basic and high-salinity seawater and display much stronger adhesion and thus show resistance to its adverse impacts. Besides, we find that the adhesion ability of Balcp19k is not impaired when it is combined with an N-terminal Thioredoxin (Trx) tag, yet whether the self-assembly property will be disrupted is not determined. Collectively, the self-assembly-enhanced adhesion presents a previously unexplored mechanism for the strong wet adhesion of barnacle cement proteins and may lead to the design of barnacle-inspired adhesive materials.
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Affiliation(s)
- Chao Liang
- Department of Chemistry and Biology, College of Science , National University of Defense Technology , Changsha 410073 , P. R. China
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructures, Department of Physics , Nanjing University , Nanjing 210093 , P. R. China
| | - Zonghuang Ye
- Department of Chemistry and Biology, College of Science , National University of Defense Technology , Changsha 410073 , P. R. China
| | - Bin Xue
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructures, Department of Physics , Nanjing University , Nanjing 210093 , P. R. China
| | - Ling Zeng
- Department of Chemistry and Biology, College of Science , National University of Defense Technology , Changsha 410073 , P. R. China
| | - Wenjian Wu
- Department of Chemistry and Biology, College of Science , National University of Defense Technology , Changsha 410073 , P. R. China
| | - Chao Zhong
- School of Physical Science and Technology , ShanghaiTech University , Shanghai 201210 , P. R. China
| | - Yi Cao
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructures, Department of Physics , Nanjing University , Nanjing 210093 , P. R. China
| | - Biru Hu
- Department of Chemistry and Biology, College of Science , National University of Defense Technology , Changsha 410073 , P. R. China
| | - Phillip B Messersmith
- Departments of Materials Science and Engineering and Bioengineering , University of California , Berkeley , California 94720 , United States
- Materials Science Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
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21
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Buffet JP, Corre E, Duvernois-Berthet E, Fournier J, Lopez PJ. Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes. Acta Biomater 2018; 72:316-328. [PMID: 29597026 DOI: 10.1016/j.actbio.2018.03.037] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2017] [Revised: 03/16/2018] [Accepted: 03/20/2018] [Indexed: 11/30/2022]
Abstract
Tube-building sabellariid polychaetes are hermatypic organisms capable of forming vast reefs in highly turbulent marine habitats. Sabellariid worms assemble their tube by gluing together siliceous and calcareous clastic particles using a polyelectrolytic biocement. Here, we performed transcriptomic analyses to investigate the genes that are differentially expressed in the parathorax region, which contains the adhesive gland and tissues, from the rest of the body. We found a large number of candidate genes to be involved in the composition and formation of biocement in two species: Sabellaria alveolata and Phragmatopoma caudata. Our results indicate that the glue is likely to be composed by a large diversity of cement-related proteins, including Poly(S), GY-rich, H-repeat and miscellaneous categories. However, sequences divergence and differences in expression profiles between S. alveolata and P. caudata of cement-related proteins may reflect adaptation to the type of substratum used to build their tube, and/or to their habitat (temperate vs tropical, amplitude of pH, salinity …). Related to the L-DOPA metabolic pathways and linked with the genes that were differentially expressed in the parathorax region, we found that tyrosinase and peroxidase gene families may have undergone independent expansion in the two Sabellariidae species investigated. Our data also reinforce the importance of protein modifications in cement formation. Altogether these new genomic resources help to identify novel transcripts encoding for cement-related proteins, but also important enzymes putatively involved in the chemistry of the adhesion process, such as kinases, and may correspond to new targets to develop biomimetic approaches. STATEMENTS OF SIGNIFICANCE The diversity of bioadhesives elaborated by marine invertebrates is a tremendous source of inspiration to develop biomimetic approaches for biomedical and technical applications. Recent studies on the adhesion system of mussel, barnacle and sea star had highlighted the usefulness of high-throughput RNA sequencing in accelerating the development of biomimetic adhesives. Adhesion in sandcastle worms, which involves catechol and phosphate chemistries, polyelectrolyte complexes, supramolecular architectures, and a coacervation process, is a useful model to develop multipurpose wet adhesives. Using transcriptomic tools, we have explored the diversity of genes encoding for structural and catalytic proteins involved in cement formation of two sandcastle worm species, Sabellaria alveolata and Phragmatopoma caudata. The important genomic resource generated should help to design novel "blue" adhesives.
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Affiliation(s)
- Jean-Philippe Buffet
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, MNHN/CNRS-7208 Sorbonne Université/IRD-207/UCN /UA, 43 rue Cuvier, Paris 75005, France
| | - Erwan Corre
- Station Biologique - FR 2424, CNRS/Sorbonne Université, ABiMS, Roscoff 29680, France
| | | | - Jérôme Fournier
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, MNHN/CNRS-7208 Sorbonne Université/IRD-207/UCN /UA, 43 rue Cuvier, Paris 75005, France
| | - Pascal Jean Lopez
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, MNHN/CNRS-7208 Sorbonne Université/IRD-207/UCN /UA, 43 rue Cuvier, Paris 75005, France.
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22
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So CR, Scancella JM, Fears KP, Essock-Burns T, Haynes SE, Leary DH, Diana Z, Wang C, North S, Oh CS, Wang Z, Orihuela B, Rittschof D, Spillmann CM, Wahl KJ. Oxidase Activity of the Barnacle Adhesive Interface Involves Peroxide-Dependent Catechol Oxidase and Lysyl Oxidase Enzymes. ACS APPLIED MATERIALS & INTERFACES 2017; 9:11493-11505. [PMID: 28273414 DOI: 10.1021/acsami.7b01185] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Oxidases are found to play a growing role in providing functional chemistry to marine adhesives for the permanent attachment of macrofouling organisms. Here, we demonstrate active peroxidase and lysyl oxidase enzymes in the adhesive layer of adult Amphibalanus amphitrite barnacles through live staining, proteomic analysis, and competitive enzyme assays on isolated cement. A novel full-length peroxinectin (AaPxt-1) secreted by barnacles is largely responsible for oxidizing phenolic chemistries; AaPxt-1 is driven by native hydrogen peroxide in the adhesive and oxidizes phenolic substrates typically preferred by phenoloxidases (POX) such as laccase and tyrosinase. A major cement protein component AaCP43 is found to contain ketone/aldehyde modifications via 2,4-dinitrophenylhydrazine (DNPH) derivatization, also called Brady's reagent, of cement proteins and immunoblotting with an anti-DNPH antibody. Our work outlines the landscape of molt-related oxidative pathways exposed to barnacle cement proteins, where ketone- and aldehyde-forming oxidases use peroxide intermediates to modify major cement components such as AaCP43.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | - Beatriz Orihuela
- Nicholas School of the Environment and Earth Sciences, Duke University Marine Laboratory , Beaufort, North Carolina 28516, United States
| | - Dan Rittschof
- Nicholas School of the Environment and Earth Sciences, Duke University Marine Laboratory , Beaufort, North Carolina 28516, United States
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23
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So CR, Fears KP, Leary DH, Scancella JM, Wang Z, Liu JL, Orihuela B, Rittschof D, Spillmann CM, Wahl KJ. Sequence basis of Barnacle Cement Nanostructure is Defined by Proteins with Silk Homology. Sci Rep 2016; 6:36219. [PMID: 27824121 PMCID: PMC5099703 DOI: 10.1038/srep36219] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Accepted: 10/12/2016] [Indexed: 01/22/2023] Open
Abstract
Barnacles adhere by producing a mixture of cement proteins (CPs) that organize into a permanently bonded layer displayed as nanoscale fibers. These cement proteins share no homology with any other marine adhesives, and a common sequence-basis that defines how nanostructures function as adhesives remains undiscovered. Here we demonstrate that a significant unidentified portion of acorn barnacle cement is comprised of low complexity proteins; they are organized into repetitive sequence blocks and found to maintain homology to silk motifs. Proteomic analysis of aggregate bands from PAGE gels reveal an abundance of Gly/Ala/Ser/Thr repeats exemplified by a prominent, previously unidentified, 43 kDa protein in the solubilized adhesive. Low complexity regions found throughout the cement proteome, as well as multiple lysyl oxidases and peroxidases, establish homology with silk-associated materials such as fibroin, silk gum sericin, and pyriform spidroins from spider silk. Distinct primary structures defined by homologous domains shed light on how barnacles use low complexity in nanofibers to enable adhesion, and serves as a starting point for unraveling the molecular architecture of a robust and unique class of adhesive nanostructures.
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Affiliation(s)
- Christopher R So
- Chemistry Division, Code 6176, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Kenan P Fears
- Chemistry Division, Code 6176, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Dagmar H Leary
- Center for Biomolecular Science and Engineering, Code 6900, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Jenifer M Scancella
- Chemistry Division, Code 6176, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Zheng Wang
- Center for Biomolecular Science and Engineering, Code 6900, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Jinny L Liu
- Center for Biomolecular Science and Engineering, Code 6900, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Beatriz Orihuela
- Nicholas School of the Environment and Earth Sciences, Duke University Marine Laboratory, 135 Duke Marine Lab Rd, Beaufort, NC, USA
| | - Dan Rittschof
- Nicholas School of the Environment and Earth Sciences, Duke University Marine Laboratory, 135 Duke Marine Lab Rd, Beaufort, NC, USA
| | - Christopher M Spillmann
- Center for Biomolecular Science and Engineering, Code 6900, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
| | - Kathryn J Wahl
- Chemistry Division, Code 6176, US Naval Research Laboratory, 4555 Overlook Ave, SW, Washington, DC, USA
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24
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Rodrigues M, Ostermann T, Kremeser L, Lindner H, Beisel C, Berezikov E, Hobmayer B, Ladurner P. Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics. BIOFOULING 2016; 32:1115-1129. [PMID: 27661452 PMCID: PMC5080974 DOI: 10.1080/08927014.2016.1233325] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Accepted: 09/01/2016] [Indexed: 06/06/2023]
Abstract
The differentiated ectodermal basal disc cells of the freshwater cnidarian Hydra secrete proteinaceous glue to temporarily attach themselves to underwater surfaces. Using transcriptome sequencing and a basal disc-specific RNA-seq combined with in situ hybridisation a highly specific set of candidate adhesive genes was identified. A de novo transcriptome assembly of 55,849 transcripts (>200 bp) was generated using paired-end and single reads from Illumina libraries constructed from different polyp conditions. Differential transcriptomics and spatial gene expression analysis by in situ hybridisation allowed the identification of 40 transcripts exclusively expressed in the ectodermal basal disc cells. Comparisons after mass spectrometry analysis of the adhesive secretion showed a total of 21 transcripts to be basal disc specific and eventually secreted through basal disc cells. This is the first study to survey adhesion-related genes in Hydra. The candidate list presented in this study provides a platform for unravelling the molecular mechanism of underwater adhesion of Hydra.
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Affiliation(s)
- Marcelo Rodrigues
- Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innsbruck, Austria
| | - Thomas Ostermann
- Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innsbruck, Austria
| | - Leopold Kremeser
- Division of Clinical Biochemistry, Biocenter, Innsbruck Medical University, Innsbruck, Austria
| | - Herbert Lindner
- Division of Clinical Biochemistry, Biocenter, Innsbruck Medical University, Innsbruck, Austria
| | | | - Eugene Berezikov
- ERIBA, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands
| | - Bert Hobmayer
- Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innsbruck, Austria
| | - Peter Ladurner
- Institute of Zoology and Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innsbruck, Austria
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