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Tiong IKR, Lau CC, Sorgeloos P, Mat Taib MI, Muhammad TST, Danish-Daniel M, Tan MP, Sui L, Wang M, Sung YY. Hsp70 Knockdown in the Brine Shrimp Artemia franciscana: Implication on Reproduction, Immune Response and Embryonic Cuticular Structure. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2024; 26:562-574. [PMID: 38683457 DOI: 10.1007/s10126-024-10318-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 04/15/2024] [Indexed: 05/01/2024]
Abstract
The potential functional role(s) of heat shock protein 70 (Hsp70) in the brine shrimp, Artemia franciscana, a crucial crustacean species for aquaculture and stress response studies, was investigated in this study. Though we have previously reported that Hsp70 knockdown may have little or no impact on Artemia development, the gestational survival and number of offspring released by adult females were impaired by obscuring Hsp70 synthesis. Transcriptomic analysis revealed that several cuticle and chitin synthetic genes were downregulated, and carbohydrate metabolic genes were differentially expressed in Hsp70-knockdown individuals. A more comprehensive microscopic examination performed in this study revealed exoskeleton structural destruction and abnormal eye lenses featured in Hsp70-deficient adult females 48 h after Hsp70 dsRNA injection. Cysts produced by these Hsp70-deficient broods, instead, had a defective shell and were smaller in size, whereas nauplii had shorter first antennae and a rougher body epicuticle surface. Changes in carbohydrate metabolism caused by Hsp70 knockdown affected glycogen levels in adult Artemia females, as well as trehalose in cysts released from these broods, indicating that Hsp70 may play a role in energy storage preservation. Outcomes from this work provided novel insights into the roles of Hsp70 in Artemia reproduction performance, cyst formation, and exoskeleton structure preservation. The findings also support our previous observation that Hsp70 knockdown reduced Artemia nauplius tolerance to bacterial pathogens, which could be explained by the fact that loss of Hsp70 downregulated several Toll receptor genes (NT1 and Spaetzle) and reduced the integrity of the exoskeleton, allowing pathogens to enter and cause infection, ultimately resulting in mortality.
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Affiliation(s)
- Irene K R Tiong
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Cher Chien Lau
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Patrick Sorgeloos
- Laboratory of Aquaculture & Artemia Reference Center, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
- International Artemia Aquaculture Consortium (IAAC), Network of Aquaculture Centres in Asia-Pacific, Bangkok, 10900, Thailand
| | - Mimi Iryani Mat Taib
- Faculty of Fisheries and Food Sciences, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Tengku Sifzizul Tengku Muhammad
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Muhd Danish-Daniel
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Min Pau Tan
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Liying Sui
- College of Marine and Environmental Sciences, Tianjin University of Science and Technology, Tianjin, China
- International Artemia Aquaculture Consortium (IAAC), Network of Aquaculture Centres in Asia-Pacific, Bangkok, 10900, Thailand
| | - Min Wang
- UMT-OUC Joint Academic Centre for Marine Studies, 21030, Kuala Nerus, Terengganu, Malaysia
- College of Marine Life Sciences, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, China
| | - Yeong Yik Sung
- Institute of Climate Adaptation and Marine Biotechnology (ICAMB), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
- Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
- International Artemia Aquaculture Consortium (IAAC), Network of Aquaculture Centres in Asia-Pacific, Bangkok, 10900, Thailand.
- UMT-OUC Joint Academic Centre for Marine Studies, 21030, Kuala Nerus, Terengganu, Malaysia.
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2
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Coussement L, Van Criekinge W, De Meyer T. Quantitative transcriptomic and epigenomic data analysis: a primer. BIOINFORMATICS ADVANCES 2024; 4:vbae019. [PMID: 38586118 PMCID: PMC10997052 DOI: 10.1093/bioadv/vbae019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 02/01/2024] [Accepted: 02/09/2024] [Indexed: 04/09/2024]
Abstract
The advent of microarray and second generation sequencing technology has revolutionized the field of molecular biology, allowing researchers to quantitatively assess transcriptomic and epigenomic features in a comprehensive and cost-efficient manner. Moreover, technical advancements have pushed the resolution of these sequencing techniques to the single cell level. As a result, the bottleneck of molecular biology research has shifted from the bench to the subsequent omics data analysis. Even though most methodologies share the same general strategy, state-of-the-art literature typically focuses on data type specific approaches and already assumes expert knowledge. Here, however, we aim at providing conceptual insight in the principles of genome-wide quantitative transcriptomic and epigenomic (including open chromatin assay) data analysis by describing a generic workflow. By starting from a general framework and its assumptions, the need for alternative or additional data-analytical solutions when working with specific data types becomes clear, and are hence introduced. Thus, we aim to enable readers with basic omics expertise to deepen their conceptual and statistical understanding of general strategies and pitfalls in omics data analysis and to facilitate subsequent progression to more specialized literature.
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Affiliation(s)
- Louis Coussement
- Department of Data Analysis and Mathematical Modelling, Ghent University, Ghent, 9000, Belgium
| | - Wim Van Criekinge
- Department of Data Analysis and Mathematical Modelling, Ghent University, Ghent, 9000, Belgium
| | - Tim De Meyer
- Department of Data Analysis and Mathematical Modelling, Ghent University, Ghent, 9000, Belgium
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3
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Bett VK, Macon A, Vicoso B, Elkrewi M. Chromosome-Level Assembly of Artemia franciscana Sheds Light on Sex Chromosome Differentiation. Genome Biol Evol 2024; 16:evae006. [PMID: 38245839 PMCID: PMC10827361 DOI: 10.1093/gbe/evae006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 11/27/2023] [Accepted: 12/21/2023] [Indexed: 01/22/2024] Open
Abstract
Since the commercialization of brine shrimp (genus Artemia) in the 1950s, this lineage, and in particular the model species Artemia franciscana, has been the subject of extensive research. However, our understanding of the genetic mechanisms underlying various aspects of their reproductive biology, including sex determination, is still lacking. This is partly due to the scarcity of genomic resources for Artemia species and crustaceans in general. Here, we present a chromosome-level genome assembly of A. franciscana (Kellogg 1906), from the Great Salt Lake, United States. The genome is 1 GB, and the majority of the genome (81%) is scaffolded into 21 linkage groups using a previously published high-density linkage map. We performed coverage and FST analyses using male and female genomic and transcriptomic reads to quantify the extent of differentiation between the Z and W chromosomes. Additionally, we quantified the expression levels in male and female heads and gonads and found further evidence for dosage compensation in this species.
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Affiliation(s)
| | - Ariana Macon
- Institute of Science and Technology Austria (ISTA), Klosterneuburg 3400, Austria
| | - Beatriz Vicoso
- Institute of Science and Technology Austria (ISTA), Klosterneuburg 3400, Austria
| | - Marwan Elkrewi
- Institute of Science and Technology Austria (ISTA), Klosterneuburg 3400, Austria
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Artigas P, Meyer DJ, Young VC, Spontarelli K, Eastman J, Strandquist E, Rui H, Roux B, Birk MA, Nakanishi H, Abe K, Gatto C. A Na pump with reduced stoichiometry is up-regulated by brine shrimp in extreme salinities. Proc Natl Acad Sci U S A 2023; 120:e2313999120. [PMID: 38079564 PMCID: PMC10756188 DOI: 10.1073/pnas.2313999120] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 10/27/2023] [Indexed: 12/18/2023] Open
Abstract
Brine shrimp (Artemia) are the only animals to thrive at sodium concentrations above 4 M. Salt excretion is powered by the Na+,K+-ATPase (NKA), a heterodimeric (αβ) pump that usually exports 3Na+ in exchange for 2 K+ per hydrolyzed ATP. Artemia express several NKA catalytic α-subunit subtypes. High-salinity adaptation increases abundance of α2KK, an isoform that contains two lysines (Lys308 and Lys758 in transmembrane segments TM4 and TM5, respectively) at positions where canonical NKAs have asparagines (Xenopus α1's Asn333 and Asn785). Using de novo transcriptome assembly and qPCR, we found that Artemia express two salinity-independent canonical α subunits (α1NN and α3NN), as well as two β variants, in addition to the salinity-controlled α2KK. These β subunits permitted heterologous expression of the α2KK pump and determination of its CryoEM structure in a closed, ion-free conformation, showing Lys758 residing within the ion-binding cavity. We used electrophysiology to characterize the function of α2KK pumps and compared it to that of Xenopus α1 (and its α2KK-mimicking single- and double-lysine substitutions). The double substitution N333K/N785K confers α2KK-like characteristics to Xenopus α1, and mutant cycle analysis reveals energetic coupling between these two residues, illustrating how α2KK's Lys308 helps to maintain high affinity for external K+ when Lys758 occupies an ion-binding site. By measuring uptake under voltage clamp of the K+-congener 86Rb+, we prove that double-lysine-substituted pumps transport 2Na+ and 1 K+ per catalytic cycle. Our results show how the two lysines contribute to generate a pump with reduced stoichiometry allowing Artemia to maintain steeper Na+ gradients in hypersaline environments.
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Affiliation(s)
- Pablo Artigas
- Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX79430
| | - Dylan J. Meyer
- Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX79430
| | - Victoria C. Young
- Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX79430
| | - Kerri Spontarelli
- Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX79430
| | - Jessica Eastman
- Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX79430
| | - Evan Strandquist
- School of Biological Sciences, Illinois State University, Normal, IL61790
| | - Huan Rui
- Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL60637
| | - Benoît Roux
- Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL60637
| | - Matthew A. Birk
- Department of Biology, Saint Francis University, Loretto, PA15940
| | - Hanayo Nakanishi
- Department of Basic Medical Sciences, Cellular and Structural Physiology Institute, Graduate School of Pharmaceutical Sciences, Nagoya University, Nagoya464-8601, Japan
| | - Kazuhiro Abe
- Department of Basic Medical Sciences, Cellular and Structural Physiology Institute, Graduate School of Pharmaceutical Sciences, Nagoya University, Nagoya464-8601, Japan
| | - Craig Gatto
- School of Biological Sciences, Illinois State University, Normal, IL61790
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Thirunavukkarasu S, Shadrin N, Munuswamy N. The pre- and postembryonic development of Artemia franciscana (Anostraca: Artemiidae). JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2023; 339:1003-1016. [PMID: 37635634 DOI: 10.1002/jez.2749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 06/20/2023] [Accepted: 08/09/2023] [Indexed: 08/29/2023]
Abstract
Artemia franciscana is a universal live feed in aquaculture, and it has been reported as an invasive species in many Asian hypersaline ecosystems. The present observations illustrated the pre- and postembryonic development stages of the A. franciscana population confined to the Indian saltern of Kelambakkam. We observed their growth patterns during various hydration periods with specific time intervals. Results showed differences in the development stages with respect to unique identity. Interestingly, a period of hydration showed notable cellular movement toward clockwise positions in the hydrating cysts. After 10 h of hydration, blastocoel appeared, accelerating the dynamic route of nuclei movement. At the end of the invagination, the embryo burst out of the cyst, and a sequence of emerging stages was noted. With reference to light microscopic observations, a series of developmental stages were observed, and each instar was documented by developing limb buds of nauplii. Excitingly, the 10th and 11th instar stages reveal sexual differentiation between male and female individuals. Thus, the laboratory culture study clearly documented the different developmental stages with their specific characteristic features. However, further molecular study would provide a cellular basis for understanding the early development of A. franciscana.
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Affiliation(s)
| | - Nickolai Shadrin
- Laboratory of Extreme Ecosystems, A. O. Kovalevsky Institute of Biology of Southern Seas, Russian Academy of Sciences (RAS), Sevastopol, Russia
| | - Natesan Munuswamy
- Department of Zoology, Unit of Aquaculture and Cryobiology, University of Madras, Chennai, India
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Duan H, Shao X, Liu W, Xiang J, Pan N, Wang X, Du G, Li Y, Zhou J, Sui L. Spatio-temporal patterns of ovarian development and VgR gene silencing reduced fecundity in parthenogenetic Artemia. Open Biol 2023; 13:230172. [PMID: 37963545 PMCID: PMC10645507 DOI: 10.1098/rsob.230172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Accepted: 10/03/2023] [Indexed: 11/16/2023] Open
Abstract
The halophilic zooplankton brine shrimp Artemia has been used as an experimental animal in multidisciplinary studies. However, the reproductive patterns and its regulatory mechanisms in Artemia remain unclear. In this study, the ovarian development process of parthenogenetic Artemia (A. parthenogenetica) was divided into five stages, and oogenesis or egg formation was identified in six phases. The oogenesis mode was assumed to be polytrophic. We also traced the dynamic translocation of candidate germline stem cells (cGSCs) using EdU labelling and elucidated several key cytological events in oogenesis through haematoxylin and eosin staining and fluorescence imaging. Distinguished from the ovary structure of insects and crustaceans, Artemia germarium originated from ovariole buds and are located at the base of the ovarioles. RNA-seq based on five stages of ovarian development identified 2657 upregulated genes related to reproduction by pair-to-pair comparison. Gbb, Dpp, piwi, vasa, nanos, VgA and VgR genes associated with cGSCs recognition and reproductive development were screened and verified using qPCR. Silencing of the VgR gene in A. parthenogenetica (Ap-VgR) at ovarian development Stage II led to a low level of gene expression (less than 10%) within 5 days, which resulted in variations in oogenesis-related gene expression and significantly inhibited vitellogenesis, impeded oocyte maturation, and eventually decreased the number of offspring. In conclusion, we have illustrated the patterns of ovarian development, outlined the key spatio-temporal features of oogenesis and identified the negative impacts of VgR gene knockdown on oogenesis using A. parthenogenetica as an experimental animal. The findings of this study also lay a foundation for the further study of reproductive biology of invertebrates.
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Affiliation(s)
- Hu Duan
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
- Key Laboratory of Marine Resource Chemistry and Food Technology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Xuanxuan Shao
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Wei Liu
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Jianhai Xiang
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, People's Republic of China
| | - Namin Pan
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Xuehui Wang
- Tianjin Fisheries Research Institute, Tianjin 300221, People's Republic of China
| | - Guoru Du
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Ying Li
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Jiaping Zhou
- Research Center of Modern Analytical Technology, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
| | - Liying Sui
- Asian Regional Artemia Reference Center, College of Marine and Environmental Sciences, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
- Key Laboratory of Marine Resource Chemistry and Food Technology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin 300457, People's Republic of China
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7
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Wu WT, Xu LY, Yan ZJ, Bi N, Cheng CY, Yang F, Yang WJ, Yang JS. Identification and characterization of the Doublesex gene and its mRNA isoforms in the brine shrimp Artemia franciscana. Biochem J 2023; 480:385-401. [PMID: 36852878 DOI: 10.1042/bcj20220495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 02/24/2023] [Accepted: 02/28/2023] [Indexed: 03/01/2023]
Abstract
Doublesex (DSX) proteins are members of the Doublesex/mab-3-related (DMRT) protein family and play crucial roles in sex determination and differentiation among the animal kingdom. In the present study, we identified two Doublesex (Dsx)-like mRNA isoforms in the brine shrimp Artemia franciscana (Kellogg 1906), which are generated by the combination of alternative promoters, alternative splicing and alternative polyadenylation. The two transcripts exhibited sex-biased enrichment, which we termed AfrDsxM and AfrDsxF. They share a common region which encodes an identical N-terminal DNA-binding (DM) domain. RT-qPCR analyses showed that AfrDsxM is dominantly expressed in male Artemia while AfrDsxF is specifically expressed in females. Expression levels of both isoforms increased along with the developmental stages of their respective sexes. RNA interference with dsRNA showed that the knockdown of AfrDsxM in male larvae led to the appearance of female traits including an ovary-like structure in the original male reproductive system and an elevated expression of vitellogenin. However, silencing of AfrDsxF induced no clear phenotypic change in female Artemia. These results indicated that the male AfrDSXM may act as inhibiting regulator upon the default female developmental mode in Artemia. Furthermore, electrophoretic mobility shift assay analyses revealed that the unique DM domain of AfrDSXs can specifically bind to promoter segments of potential downstream target genes like AfrVtg. These data show that AfrDSXs play crucial roles in regulating sexual development in Artemia, and further provide insight into the evolution of sex determination/differentiation in sexual organisms.
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Affiliation(s)
- Wen-Tao Wu
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Lian-Ying Xu
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Zhi-Jun Yan
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Ning Bi
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Cai-Yuan Cheng
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Fan Yang
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Wei-Jun Yang
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Jin-Shu Yang
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China
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8
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Yan ZJ, Wu WT, Xu LY, Bi N, Yang F, Yang WJ, Yang JS. Downregulation of a CT10 regulator of kinase (Crk) promotes the formation of diapause embryos in the brine shrimp Artemia. Gene 2023; 866:147349. [PMID: 36893874 DOI: 10.1016/j.gene.2023.147349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/12/2023] [Accepted: 03/03/2023] [Indexed: 03/09/2023]
Abstract
To survive under harsh environments, embryonic development of Artemia was arrested at the gastrula stage and released as the diapause embryo. Cell cycle and metabolism were highly suppressed in this state of quiescence. However, cellular mechanisms underlying diapause remain largely unclear. In this study, we found that the expression level of a CT10 regulator of kinase-encoding gene (Ar-Crk) in diapause embryos was significantly lower than non-diapause embryos at the early embryogenetic stage of Artemia. Knockdown of Ar-Crk by RNA interference induced formation of diapause embryos, while the control group produced nauplii. Western blot analysis and metabolic assays revealed that the diapause embryos produced by Ar-Crk-knocked-down Artemia had similar characteristics of diapause markers, arrested cell cycle, and suppressed metabolism with those diapause embryos produced by natural oviparous Artemia. Transcriptomic analysis of Artemia embryos revealed knockdown of Ar-Crk induced downregulation of the aurora kinase A (AURKA) signaling pathway, as well as energetic and biomolecular metabolisms. Taken together, we proposed that Ar-Crk is a crucial factor in determining the process of diapause in Artemia. Our results provide insight into the functions of Crk in fundamental regulations such as cellular quiescence.
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Affiliation(s)
- Zhi-Jun Yan
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China
| | - Wen-Tao Wu
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China
| | - Lian-Ying Xu
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China
| | - Ning Bi
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China
| | - Fan Yang
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China
| | - Wei-Jun Yang
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China
| | - Jin-Shu Yang
- College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 3100058, China.
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9
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Clemen-Pascual LM, Macahig RAS, Rojas NRL. Comparative toxicity, phytochemistry, and use of 53 Philippine medicinal plants. Toxicol Rep 2022; 9:22-35. [PMID: 34976744 PMCID: PMC8685920 DOI: 10.1016/j.toxrep.2021.12.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 11/30/2021] [Accepted: 12/04/2021] [Indexed: 02/06/2023] Open
Abstract
The study compares the toxicity of 53 selected medicinal plants commonly used in the Philippines to treat various diseases. It uses as a benchmark Vitex negundo L., which was approved by the Philippine Food and Drug Administration as an herbal drug for cough and asthma after passing clinical trials for safety and efficacy. The methods were chosen for their simplicity and accessibility even for resource-limited laboratories. Extracts (95 % ethanol) of the medicinal parts of the plants were (1) chemically profiled using qualitative phytochemical tests that detect the presence of key classes of bioactive compounds; and (2) evaluated for toxicity using the brine shrimp (Artemia sp.) lethality assay (BSLA). General phytochemical screening revealed the presence of tannins in 50 plant extracts, alkaloids in 43, glycosides in 33, flavonoids in 31, steroids in 21, triterpenoids in 20, anthraquinones in 10, and saponins in 8. Extracts from eight plants had LC50 values lower than the potassium dichromate control (approximately 12 μg/mL) and were considered highly toxic; extracts from 21 plants had LC50 values between 12 μg/mL and 100 μg/mL and were considered moderately toxic; extracts from 19 plant extracts, including Vitex negundo and some common vegetables, had LC50 values between 100 μg/mL and 500 μg/mL, and were considered mildly toxic and likely to have reasonable safety margins; five plant extracts, including common vegetables, had LC50 values above 500 μg/mL and were considered essentially nontoxic. No apparent correlation could be found between toxicity and chemical diversity or a specific class of phytochemicals present. Our findings may serve as a guide for herbal drug and nutraceutical development, especially in prioritizing plants for more detailed safety studies.
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Affiliation(s)
- Lydia M Clemen-Pascual
- Department of Chemistry, School of Science and Engineering, Ateneo de Manila University, Loyola Heights, Quezon City, 1108, Philippines.,Department of Chemistry, College of Arts and Sciences, University of Southern Mindanao, North Cotabato, 9407, Philippines
| | - Rene Angelo S Macahig
- Department of Chemistry, School of Science and Engineering, Ateneo de Manila University, Loyola Heights, Quezon City, 1108, Philippines
| | - Nina Rosario L Rojas
- Department of Chemistry, School of Science and Engineering, Ateneo de Manila University, Loyola Heights, Quezon City, 1108, Philippines
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10
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Lee J, Cho BC, Park JS. Transcriptomic analysis of brine shrimp Artemia franciscana across a wide range of salinities. Mar Genomics 2021; 61:100919. [PMID: 34965493 DOI: 10.1016/j.margen.2021.100919] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 11/08/2021] [Accepted: 12/14/2021] [Indexed: 12/29/2022]
Abstract
Brine shrimp Artemia franciscana, a commercially important species, can thrive in a wide range of salinities and is commonly found in hypersaline lakes and solar salterns. Transcriptome analysis can enhance the understanding of the adaptative mechanisms of brine shrimp in aquaculture. RNA sequencing (RNAseq) data was generated from A. franciscana adults that were salt-adapted for 2-4 weeks at five salinities: 35, 50, 100, 150, and 230 psu. Long-read isoform sequencing (IsoSeq) data was used to construct a high-quality transcriptome assembly. Also, the gene expression patterns in A. franciscana adults were examined. Notably, the transcriptional response of A. franciscana's acclimation to intermediate salinities (50-150 psu) displayed frequently and differentially U-shaped or inverted U-shaped expression patterns. In addition, the types of genes showing two nonmonotonic expression patterns were distinct from each other. The coordinated shifts in gene expression suggest different homeostatic strategies of A. franciscana at specific salinities; such strategies may enhance population fitness at extreme salinities. Our study should promote a scientific concept for the gene expression patterns of A. franciscana along a broad salinity gradient, and a variety of salinity and prey should be monitored for testing the gene expression pattern of this important aquaculture species.
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Affiliation(s)
- JunMo Lee
- Department of Oceanography, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Byung Cheol Cho
- School of Earth and Environmental Sciences, Seoul National University, Seoul 08826, Republic of Korea; Saemangeum Environmental Research Center, Kunsan National University, Kunsan 54150, Republic of Korea
| | - Jong Soo Park
- Department of Oceanography, Kyungpook National University, Daegu 41566, Republic of Korea.
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