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Ravan A, Procopio S, Chemla YR, Gruebele M. Temperature-jump microscopy and interaction of Hsp70 heat shock protein with a client protein in vivo. Methods 2024; 231:154-164. [PMID: 39362572 DOI: 10.1016/j.ymeth.2024.09.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Revised: 09/28/2024] [Accepted: 09/30/2024] [Indexed: 10/05/2024] Open
Abstract
Biomolecular processes such as protein-protein interactions can depend strongly on cell type and even vary within a single cell type. Here we develop a microscope with a Peltier-controlled temperature stage, a laser temperature jump to induce heat stress, and an autofocusing feature to mitigate temperature drift during experiments, to study a protein-protein interaction in a selected cell type within a live organism, the zebrafish larva. As an application of the instrument, we show that there is considerable cell-to-cell variation of the heat shock protein Hsp70 binding to one of its clients, phosphoglycerate kinase in vivo. We adapt a key feature from our previous folding study, rare transformation of cells within the larva, so that individual cells can be imaged and differentiated for cell-to-cell response. Our approach can be extended to other organisms and cell types than the ones demonstrated in this work.
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Affiliation(s)
- Aniket Ravan
- Center for Biophysics and Quantitative Biology, University of Illinois Urbana Champaign, Urbana 61801, USA
| | - Samuel Procopio
- Department of Physics, University of Illinois Urbana Champaign, Urbana 61801, USA
| | - Yann R Chemla
- Center for Biophysics and Quantitative Biology, University of Illinois Urbana Champaign, Urbana 61801, USA; Department of Physics, University of Illinois Urbana Champaign, Urbana 61801, USA
| | - Martin Gruebele
- Center for Biophysics and Quantitative Biology, University of Illinois Urbana Champaign, Urbana 61801, USA; Department of Physics, University of Illinois Urbana Champaign, Urbana 61801, USA; Department of Chemistry and Carle-Illinois College of Medicine, University of Illinois Urbana Champaign, Urbana 61801, USA.
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2
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Sridhar G, Vergassola M, Marques JC, Orger MB, Costa AC, Wyart C. Uncovering multiscale structure in the variability of larval zebrafish navigation. ARXIV 2024:arXiv:2405.17143v1. [PMID: 38855549 PMCID: PMC11160889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Animals chain movements into long-lived motor strategies, exhibiting variability across scales that reflects the interplay between internal states and environmental cues. To reveal structure in such variability, we build Markov models of movement sequences that bridges across time scales and enables a quantitative comparison of behavioral phenotypes among individuals. Applied to larval zebrafish responding to diverse sensory cues, we uncover a hierarchy of long-lived motor strategies, dominated by changes in orientation distinguishing cruising versus wandering strategies. Environmental cues induce preferences along these modes at the population level: while fish cruise in the light, they wander in response to aversive stimuli, or in search for appetitive prey. As our method encodes the behavioral dynamics of each individual fish in the transitions among coarse-grained motor strategies, we use it to uncover a hierarchical structure in the phenotypic variability that reflects exploration-exploitation trade-offs. Across a wide range of sensory cues, a major source of variation among fish is driven by prior and/or immediate exposure to prey that induces exploitation phenotypes. A large degree of variability that is not explained by environmental cues unravels motivational states that override the sensory context to induce contrasting exploration-exploitation phenotypes. Altogether, by extracting the timescales of motor strategies deployed during navigation, our approach exposes structure among individuals and reveals internal states tuned by prior experience.
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Affiliation(s)
- Gautam Sridhar
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
| | - Massimo Vergassola
- Laboratoire de Physique de l’Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - João C. Marques
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa 1400-038, Portugal
| | - Michael B. Orger
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa 1400-038, Portugal
| | - Antonio Carlos Costa
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
- Laboratoire de Physique de l’Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Claire Wyart
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
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Palieri V, Paoli E, Wu YK, Haesemeyer M, Grunwald Kadow IC, Portugues R. The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish. Curr Biol 2024; 34:489-504.e7. [PMID: 38211586 PMCID: PMC10849091 DOI: 10.1016/j.cub.2023.12.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 11/22/2023] [Accepted: 12/11/2023] [Indexed: 01/13/2024]
Abstract
Animals must maintain physiological processes within an optimal temperature range despite changes in their environment. Through behavioral assays, whole-brain functional imaging, and neural ablations, we show that larval zebrafish, an ectothermic vertebrate, achieves thermoregulation through homeostatic navigation-non-directional and directional movements toward the temperature closest to its physiological setpoint. A brain-wide circuit encompassing several brain regions enables this behavior. We identified the preoptic area of the hypothalamus (PoA) as a key brain structure in triggering non-directional reorientation when thermal conditions are worsening. This result shows an evolutionary conserved role of the PoA as principal thermoregulator of the brain also in ectotherms. We further show that the habenula (Hb)-interpeduncular nucleus (IPN) circuit retains a short-term memory of the sensory history to support the generation of coherent directed movements even in the absence of continuous sensory cues. We finally provide evidence that this circuit may not be exclusive for temperature but may convey a more abstract representation of relative valence of physiologically meaningful stimuli regardless of their specific identity to enable homeostatic navigation.
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Affiliation(s)
- Virginia Palieri
- Institute of Neuroscience, Technical University of Munich, Biedersteiner Strasse 29, 80802 Munich, Germany; School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Emanuele Paoli
- Institute of Neuroscience, Technical University of Munich, Biedersteiner Strasse 29, 80802 Munich, Germany
| | - You Kure Wu
- Institute of Neuroscience, Technical University of Munich, Biedersteiner Strasse 29, 80802 Munich, Germany
| | - Martin Haesemeyer
- Department of Neuroscience, The Ohio State University College of Medicine, Columbus, OH 43210, USA
| | - Ilona C Grunwald Kadow
- School of Life Sciences, Technical University of Munich, Freising, Germany; Institute of Physiology II, University of Bonn, Medical Faculty (UKB), Nussallee 11, 53115 Bonn, Germany.
| | - Ruben Portugues
- Institute of Neuroscience, Technical University of Munich, Biedersteiner Strasse 29, 80802 Munich, Germany; Munich Cluster of Systems Neurology (SyNergy), Feodor-Lynen-Str. 17, 81377 Munich, Germany.
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Jameson C, Boulton KA, Silove N, Nanan R, Guastella AJ. Ectodermal origins of the skin-brain axis: a novel model for the developing brain, inflammation, and neurodevelopmental conditions. Mol Psychiatry 2023; 28:108-117. [PMID: 36284159 PMCID: PMC9812765 DOI: 10.1038/s41380-022-01829-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 09/16/2022] [Accepted: 10/03/2022] [Indexed: 01/09/2023]
Abstract
Early life development and its divergence is influenced by multiple genetic, neurological, and environmental factors. Atypical neurodevelopment, such as that observed in autism spectrum disorder, likely begins in early gestation during a period of entwined growth between the brain and epithelial barriers of the skin, gastrointestinal tract, and airway. This review coalesces epidemiological and neuroinflammatory evidence linking cutaneous atopic disease with both reduced skin barrier integrity and determinants of neurodivergence. We consider the shared developmental origin of epidermal and neural tissue with related genetic and environmental risk factors to evaluate potential pre- and postnatal modifiers of the skin-brain connection. Initial postnatal skin barrier integrity may provide a useful marker for both cortical integrity and meaningful subgroups of children showing early neurodevelopmental delays. It may also modify known risk factors to neurodevelopment, such as pathogen caused immune system activation. These novel insights of a skin-brain-neurodevelopment connection may advance detection and intervention opportunities.
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Affiliation(s)
- C. Jameson
- grid.1013.30000 0004 1936 834XClinic for Autism and Neurodevelopmental Research, Brain and Mind Centre, Children’s Hospital Westmead Clinical School, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW Australia ,grid.1013.30000 0004 1936 834XChild Neurodevelopment and Mental Health Team, Brain and Mind Centre, University of Sydney, Camperdown, NSW Australia
| | - K. A. Boulton
- grid.1013.30000 0004 1936 834XClinic for Autism and Neurodevelopmental Research, Brain and Mind Centre, Children’s Hospital Westmead Clinical School, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW Australia ,grid.1013.30000 0004 1936 834XChild Neurodevelopment and Mental Health Team, Brain and Mind Centre, University of Sydney, Camperdown, NSW Australia
| | - N. Silove
- grid.1013.30000 0004 1936 834XChild Neurodevelopment and Mental Health Team, Brain and Mind Centre, University of Sydney, Camperdown, NSW Australia ,grid.413973.b0000 0000 9690 854XChild Development Unit, The Children’s Hospital at Westmead, Westmead, NSW Australia
| | - R. Nanan
- grid.1013.30000 0004 1936 834XChild Neurodevelopment and Mental Health Team, Brain and Mind Centre, University of Sydney, Camperdown, NSW Australia ,grid.1013.30000 0004 1936 834XCharles Perkins Centre Nepean’s and Sydney Medical School Nepean, The University of Sydney, Nepean, Discipline of Paediatrics, University of Sydney, Camperdown, NSW Australia
| | - A. J. Guastella
- grid.1013.30000 0004 1936 834XClinic for Autism and Neurodevelopmental Research, Brain and Mind Centre, Children’s Hospital Westmead Clinical School, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW Australia ,grid.1013.30000 0004 1936 834XChild Neurodevelopment and Mental Health Team, Brain and Mind Centre, University of Sydney, Camperdown, NSW Australia
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Lin TF, Mohammadi M, Cullen KE, Chacron MJ, Huang MYY. Optokinetic set-point adaptation functions as an internal dynamic calibration mechanism for oculomotor disequilibrium. iScience 2022; 25:105335. [PMID: 36325052 PMCID: PMC9619307 DOI: 10.1016/j.isci.2022.105335] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 09/06/2022] [Accepted: 10/10/2022] [Indexed: 11/30/2022] Open
Abstract
Experience-dependent brain circuit plasticity underlies various sensorimotor learning and memory processes. Recently, a novel set-point adaptation mechanism was identified that accounts for the pronounced negative optokinetic afternystagmus (OKAN) following a sustained period of unidirectional optokinetic nystagmus (OKN) in larval zebrafish. To investigate the physiological significance of optokinetic set-point adaptation, animals in the current study were exposed to a direction-alternating optokinetic stimulation paradigm that better resembles their visual experience in nature. Our results reveal that not only was asymmetric alternating stimulation sufficient to induce the set-point adaptation and the resulting negative OKAN, but most strikingly, under symmetric alternating stimulation some animals displayed an inherent bias of the OKN gain in one direction, and that was compensated by the similar set-point adaptation. This finding, supported by mathematical modeling, suggests that set-point adaptation allows animals to cope with asymmetric optokinetic behaviors evoked by either external stimuli or innate oculomotor biases. Optokinetic set-point adaptation reflects the temporal integration of visual input Wild-type zebrafish larvae may display innate optokinetic left-right asymmetries The degree of the optokinetic asymmetry among larvae is normally distributed The innate optokinetic asymmetry can be compensated by the set-point adaptation
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Affiliation(s)
- Ting-Feng Lin
- Department of Neurology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
- Neuroscience Center Zurich (ZNZ), University of Zurich and ETH Zurich, Zurich, Switzerland
- Corresponding author
| | - Mohammad Mohammadi
- Department of Biomedical Engineering, McGill University, Montreal, QC, Canada
| | - Kathleen E. Cullen
- Department of Biomedical Engineering, The Johns Hopkins University, Baltimore, MD, USA
- Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA
- Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD, USA
- Kavli Neuroscience Discovery Institute, The Johns Hopkins University, Baltimore, MD, USA
| | | | - Melody Ying-Yu Huang
- Department of Neurology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
- Neuroscience Center Zurich (ZNZ), University of Zurich and ETH Zurich, Zurich, Switzerland
- Corresponding author
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