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Liu H, Peng W, Mao K, Yang Y, Wu Q, Wang K, Zeng M, Han X, Han J, Zhou H. The Changes in Fecal Bacterial Communities in Goats Offered Rumen-Protected Fat. Microorganisms 2024; 12:822. [PMID: 38674767 PMCID: PMC11052158 DOI: 10.3390/microorganisms12040822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/12/2024] [Accepted: 04/15/2024] [Indexed: 04/28/2024] Open
Abstract
Leizhou goats are famous for their delicious meat but have inferior growth performance. There is little information on rumen-protected fat (RPF) from the Leizhou goat. Hence, we observed the effects of RPF on growth, fecal short-chain fatty acids, and bacteria community with respect to Leizhou goats. Twelve goats (13.34 ± 0.024 kg) were selected and assigned randomly to one of two treatments: (1) a control diet (CON) and (2) 2.4% RPF with a control diet (RPF). The final body weight and average daily gain (ADG) were greater (p < 0.05), and the dry matter intake (DMI): ADG was lower (p < 0.05) in the RPF group than in the CON group. There were no differences in DMI between the CON and RPF groups. The concentrations of total short-chain fatty acids, acetate, propionate, and butyrate were lower (p < 0.05) in the RPF group than in the CON group. The relative abundances of Ruminococcus, Rikenellaceae_RC9_gut_group, Treponema, norank_f__norank_o__RF39, Eubacterium_siraeum_group, and Ruminococcus_torques_group were lower (p < 0.05) in the RPF group than in the CON group. The relative abundances of Bacteroides, norank_f__norank_o__Clostridia_UCG-014, norank_f__Eubacterium_coprostanoligenes_group, Eubacterium_ruminantium_group, norank_f__Oscillospirale-UCG-010, Oscillospiraceae_UCG-002, and Family_XIII_AD3011_group were greater (p < 0.05) in the RPF group than in the CON group. It was concluded that RPF could improve the goats' growth performance by regulating their fecal bacteria communities.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Jiancheng Han
- Zhanjiang Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524000, China; (H.L.); (W.P.); (K.M.); (Y.Y.); (Q.W.); (M.Z.)
| | - Hanlin Zhou
- Zhanjiang Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524000, China; (H.L.); (W.P.); (K.M.); (Y.Y.); (Q.W.); (M.Z.)
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Bakr MH, Abd Elazeim MG, Abd El Gawad AERM, Olafadehan OA, Kholif AE. Partial replacement of corn with chocolate byproducts or protected fat in diets of early lactating Holstein cows: feed utilization and lactational performance. Anim Biotechnol 2023; 34:3718-3728. [PMID: 37165476 DOI: 10.1080/10495398.2023.2209604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
This study determined the effects of the partial replacement of corn with chocolate byproducts or protected fat on the performance of cows. Forty multiparous Holstein cows were assigned to four treatments in a completely randomized design for 90 d. The control diet was a complete diet containing 41.2% concentrate feed mixture, 41.2% corn silage, and 17.6% berseem hay. In the other experimental diets, each kg of crushed corn grain in the control diet (DM basis) was replaced with 600 g chocolate byproducts (CH), 400 g protected fat (PF), or 500 g of a mixture of chocolate byproducts and protected fat (1:1 DM basis) (CHPF). Both amounts of PF and CH had the same energy concentration as 1 kg of corn. The experimental treatments did not affect total intake; however, they increased (p < 0.001) daily production of milk, milk fat content, and feed efficiency. Moreover, treatments increased (p < 0.05) blood total protein, albumin, glucose, cholesterol, and triglyceride. The CH, PF, and CHPF treatments increased (p < 0.01) nutrient digestibility. It is concluded that replacing 1 kg of corn in the diet of lactating Holstein cows with PF at 400 g, followed by CHPF at 500 g, and CH at 600 g enhanced milk production and feed efficiency.
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Affiliation(s)
- Mohammed H Bakr
- Animal Production Department, Faculty of Agriculture, Cairo University, Giza, Egypt
| | - Moemen G Abd Elazeim
- Animal Production Department, Faculty of Agriculture, Cairo University, Giza, Egypt
| | | | | | - Ahmed E Kholif
- Dairy Science Department, National Research Centre, Giza, Egypt
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McVey C, Hsieh F, Manriquez D, Pinedo P, Horback K. Invited Review: Applications of unsupervised machine learning in livestock behavior: Case studies in recovering unanticipated behavioral patterns from precision livestock farming data streams. APPLIED ANIMAL SCIENCE 2023. [DOI: 10.15232/aas.2022-02335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
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Chocolate byproducts and protected fats enriched with chromium to replace corn in diets of early lactation Holstein cows: feed utilization, blood profile, and lactational performance. ANNALS OF ANIMAL SCIENCE 2023. [DOI: 10.2478/aoas-2023-0025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Abstract
Abstract
The present experiment aimed to evaluate the partial replacement of corn with chocolate byproducts or protected fats in the diet of lactating cows on feed utilization, blood profile and lactation performance. Fifty multiparous Holstein cows (560±22 kg BW, 3±1 parity, 7±1 days in milk, and previous milk production of 34±3 kg/d), were randomly assigned to 5 treatments in a completely randomized design for 90 days. The control diet contained a concentrate feed mixture containing (per kg DM 412 g concentrate feed mixture, 412 g corn silage, and 176 g berseem hay). The control diet contained 17.6% crushed corn (DM basis). In another treatment, the control diet was supplemented with 1 g chromium daily (Chromium diet). In the other diets, each kg of crushed corn grain was replaced with 600 g chocolate byproducts (CH diet), 400 g protected fats (PF diet), or 500 g of chocolate byproducts and protected fats mixture (1:1 DM basis) (CHPF diet), DM basis, and each of the diets was also supplemented with 1 g chromium daily. Both amounts of protected fats and chocolate byproducts had the same energy concentration as 1 kg of corn. Without affecting feed intake, the replacement increased (P<0.01) milk production, milk fat concentration, and feed efficiency. The replacement (P<0.05) increased the concentrations of serum total proteins, albumin, glucose, cholesterol, triglyceride, and chromium in comparison with the control diet. Higher (P<0.001) nutrient digestibility was observed with CH, PF, and CHPF treatments. It is concluded that chromium supplementation did not affect feed utilization or cows performance; however, partial replacement of corn with chromium supplemented protected fat, chocolate byproducts or their mixture improved milk production and feed efficiency.
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The enrichment of chocolate byproducts and protected fats with zinc to partially replace corn in diets of early lactation Holstein cows. ANNALS OF ANIMAL SCIENCE 2023. [DOI: 10.2478/aoas-2023-0012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]
Abstract
Abstract
The present experiment aimed to evaluate the effect of partial replacement of corn with chocolate byproducts, protected fats, or their mixture supplemented with zinc in the diet of lactating cows on feed utilization and lactation performance for 90 days. Fifty multiparous Holstein cows (565±25 kg BW, 3±1 parity, 7±1 days in milk, a previous milk production of 35±2.9 kg/d), were randomly assigned to 5 treatments in a completely randomized design. The control diet contained (per kg DM): 412 g concentrate feed mixture, 412 g corn silage, and 176 g berseem hay. The control diet was supplemented with 1 g of zinc daily (Zinc diet). In the other diets, each kg of crushed corn grain was replaced with (DM basis) 600 g chocolate byproducts (CH diet), 400 g protected fats (PF diet), or 500 g of chocolate byproducts and protected fats mixture (1:1 DM basis) (CHPF diet). Both amounts of protected fats and chocolate byproducts had the same energy concentration as 1 kg of corn. The total mixed ration was prepared and distributed using a horizontal mixer system after mixing for 20 min. Chemical analysis showed that the replacement minimally affected the composition of the total mixed rations. Additionally, treatments did not affect feed intake. Compared to the control treatment, the zinc treatment did not affect milk production, milk composition, or feed efficiency. Increased (P<0.05) daily production of milk and component yields, and feed efficiency as well as fat concentration were observed by the CH, PF and CHPF treatments. Without affecting other measured blood parameters or hematocrit, treatments increased (P<0.05) the concentrations of total proteins, albumin, glucose, cholesterol, triglyceride, and zinc in the blood of cows. Additionally, the CH, PF and CHPF treatments increased (P<0.01) the digestibility of nutrients compared to the control treatment. It is concluded that the addition of zinc to the control did not affect cow performance; however, its addition to chocolate byproducts, protected fats, or their mixture to partially replace corn improved the performance of cows.
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McVey C, Hsieh F, Manriquez D, Pinedo P, Horback K. Livestock Informatics Toolkit: A Case Study in Visually Characterizing Complex Behavioral Patterns across Multiple Sensor Platforms, Using Novel Unsupervised Machine Learning and Information Theoretic Approaches. SENSORS (BASEL, SWITZERLAND) 2021; 22:1. [PMID: 35009546 PMCID: PMC8747447 DOI: 10.3390/s22010001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 12/11/2021] [Accepted: 12/17/2021] [Indexed: 06/14/2023]
Abstract
Large and densely sampled sensor datasets can contain a range of complex stochastic structures that are difficult to accommodate in conventional linear models. This can confound attempts to build a more complete picture of an animal's behavior by aggregating information across multiple asynchronous sensor platforms. The Livestock Informatics Toolkit (LIT) has been developed in R to better facilitate knowledge discovery of complex behavioral patterns across Precision Livestock Farming (PLF) data streams using novel unsupervised machine learning and information theoretic approaches. The utility of this analytical pipeline is demonstrated using data from a 6-month feed trial conducted on a closed herd of 185 mix-parity organic dairy cows. Insights into the tradeoffs between behaviors in time budgets acquired from ear tag accelerometer records were improved by augmenting conventional hierarchical clustering techniques with a novel simulation-based approach designed to mimic the complex error structures of sensor data. These simulations were then repurposed to compress the information in this data stream into robust empirically-determined encodings using a novel pruning algorithm. Nonparametric and semiparametric tests using mutual and pointwise information subsequently revealed complex nonlinear associations between encodings of overall time budgets and the order that cows entered the parlor to be milked.
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Affiliation(s)
- Catherine McVey
- Department of Animal Science, University of California Davis, Davis, CA 95616, USA;
| | - Fushing Hsieh
- Department of Statistics, University of California Davis, Davis, CA 95616, USA;
| | - Diego Manriquez
- Department of Animal Science, Colorado State University, Fort Collins, CO 80523, USA; (D.M.); (P.P.)
| | - Pablo Pinedo
- Department of Animal Science, Colorado State University, Fort Collins, CO 80523, USA; (D.M.); (P.P.)
| | - Kristina Horback
- Department of Animal Science, University of California Davis, Davis, CA 95616, USA;
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Pereira G, Simões P, Bexiga R, Silva E, Mateus L, Fernandes T, Alves SP, Bessa RJB, Lopes-da-Costa L. Effects of feeding rumen-protected linseed fat to postpartum dairy cows on plasma n-3 polyunsaturated fatty acid concentrations and metabolic and reproductive parameters. J Dairy Sci 2021; 105:361-374. [PMID: 34635360 DOI: 10.3168/jds.2021-20674] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 08/28/2021] [Indexed: 12/30/2022]
Abstract
High-yielding dairy cows experience a negative energy balance and inflammatory status during the transition period. Fat supplementation increases diet energy density, and plasma n-3 polyunsaturated fatty acids (PUFA) have been proposed to improve immune function. This study tested the hypothesis that dietary supplementation with a rumen-protected and n-3 PUFA-enriched fat could ameliorate both the energetic deficit and immune status of postpartum high-yielding dairy cows, improving overall health and reproductive efficiency. At 11 d in milk (DIM), cows were randomly allocated to groups (1) n-3 PUFA (n = 29), supplemented with encapsulated linseed oil supplying additional up to 64 g/d (mean 25 ± 4 g/d) of α-linolenic acid (ALA), or (2) control (n = 31), supplemented with hydrogenated palm oil without ALA content. Fat supplements of the n-3 PUFA and control groups were available through an automated, off-parlor feeding system, and intake depended on the cow's feeding behavior. Plasma ALA concentrations were higher in n-3 PUFA than control cows, following a linear relation with supplement ingestion, resulting in a lower n-6/n-3 ratio in plasma. Metabolic parameters (body condition score and glucose and β-hydroxybutyric acid blood concentrations) were unaffected, but milk yield improved with increased intake of fat supplements. Plasma total adiponectin concentrations were negatively correlated with ingestion of n-3 PUFA-enriched fat supplement, following a linear relation with intake. Conception rate to first AI increased with higher intake of both fats, but a decrease of calving-to-conception interval occurred only in n-3 PUFA cows. Postpartum ovarian activity and endometrial inflammatory status at 45 DIM were unaffected. In conclusion, this study evinced a positive linear relation between rumen-protected linseed fat intake and plasma n-3 PUFA concentrations, which modulated adiponectin expression and improved reproductive parameters.
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Affiliation(s)
- Gonçalo Pereira
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Patrícia Simões
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Ricardo Bexiga
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Elisabete Silva
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Luisa Mateus
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Tatiane Fernandes
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Susana P Alves
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Rui J B Bessa
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - Luis Lopes-da-Costa
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal.
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McVey C, Hsieh F, Manriquez D, Pinedo P, Horback K. Mind the Queue: A Case Study in Visualizing Heterogeneous Behavioral Patterns in Livestock Sensor Data Using Unsupervised Machine Learning Techniques. Front Vet Sci 2020; 7:523. [PMID: 33134329 PMCID: PMC7518149 DOI: 10.3389/fvets.2020.00523] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 07/07/2020] [Indexed: 12/28/2022] Open
Abstract
Sensor technologies allow ethologists to continuously monitor the behaviors of large numbers of animals over extended periods of time. This creates new opportunities to study livestock behavior in commercial settings, but also new methodological challenges. Densely sampled behavioral data from large heterogeneous groups can contain a range of complex patterns and stochastic structures that may be difficult to visualize using conventional exploratory data analysis techniques. The goal of this research was to assess the efficacy of unsupervised machine learning tools in recovering complex behavioral patterns from such datasets to better inform subsequent statistical modeling. This methodological case study was carried out using records on milking order, or the sequence in which cows arrange themselves as they enter the milking parlor. Data was collected over a 6-month period from a closed group of 200 mixed-parity Holstein cattle on an organic dairy. Cows at the front and rear of the queue proved more consistent in their entry position than animals at the center of the queue, a systematic pattern of heterogeneity more clearly visualized using entropy estimates, a scale and distribution-free alternative to variance robust to outliers. Dimension reduction techniques were then used to visualize relationships between cows. No evidence of social cohesion was recovered, but Diffusion Map embeddings proved more adept than PCA at revealing the underlying linear geometry of this data. Median parlor entry positions from the pre- and post-pasture subperiods were highly correlated (R = 0.91), suggesting a surprising degree of temporal stationarity. Data Mechanics visualizations, however, revealed heterogeneous non-stationary among subgroups of animals in the center of the group and herd-level temporal outliers. A repeated measures model recovered inconsistent evidence of a relationships between entry position and cow attributes. Mutual conditional entropy tests, a permutation-based approach to assessing bivariate correlations robust to non-independence, confirmed a significant but non-linear association with peak milk yield, but revealed the age effect to be potentially confounded by health status. Finally, queueing records were related back to behaviors recorded via ear tag accelerometers using linear models and mutual conditional entropy tests. Both approaches recovered consistent evidence of differences in home pen behaviors across subsections of the queue.
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Affiliation(s)
- Catherine McVey
- Department of Animal Science, University of California, Davis, Davis, CA, United States
| | - Fushing Hsieh
- Department of Statistics, University of California, Davis, Davis, CA, United States
| | - Diego Manriquez
- Department of Animal Science, Colorado State University, Fort Collins, CO, United States
| | - Pablo Pinedo
- Department of Animal Science, Colorado State University, Fort Collins, CO, United States
| | - Kristina Horback
- Department of Animal Science, University of California, Davis, Davis, CA, United States
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