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Düz E, İlgün A, Bozkurt FB, Çakır T. Integration of genomic and transcriptomic layers in RNA-Seq data leads to protein interaction modules with improved Alzheimer's disease associations. Eur J Neurosci 2024. [PMID: 39532700 DOI: 10.1111/ejn.16600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 09/19/2024] [Accepted: 10/31/2024] [Indexed: 11/16/2024]
Abstract
Alzheimer's disease (AD) is the most common neurodegenerative disease, and it is currently untreatable. RNA sequencing (RNA-Seq) is commonly used in the literature to identify AD-associated molecular mechanisms by analysing changes in gene expression. RNA-Seq data can also be used to detect genomic variants, enabling the identification of the genes with a higher load of deleterious variants in patients compared with controls. Here, we analysed AD RNA-Seq datasets to obtain differentially expressed genes and genes with a higher load of pathogenic variants in AD, and we combined them in a single list. We mapped these genes on a human protein-protein interaction network to discover subnetworks perturbed by AD. Our results show that utilizing gene pathogenicity information from RNA-Seq data positively contributes to the disclosure of AD-related mechanisms. Moreover, dividing the discovered subnetworks into highly connected modules reveals a clearer picture of altered molecular pathways that, otherwise, would not be captured. Repeating the whole pipeline with human metabolic network genes led to results confirming the positive contribution of gene pathogenicity information and enabled a more detailed identification of altered metabolic pathways in AD.
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Affiliation(s)
- Elif Düz
- Department of Bioengineering, Gebze Technical University, Gebze, Kocaeli, Turkey
| | - Atılay İlgün
- Department of Bioengineering, Gebze Technical University, Gebze, Kocaeli, Turkey
| | - Fatma Betül Bozkurt
- Department of Bioengineering, Gebze Technical University, Gebze, Kocaeli, Turkey
| | - Tunahan Çakır
- Department of Bioengineering, Gebze Technical University, Gebze, Kocaeli, Turkey
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Li SJ, Ma HM, Wang AQ, Pei R, Tang XY, Liu GN, Zhou Y, Piao MH. Association of cognitive performance with overall, dosage, intensity, and domain physical activity in aging: NHANES 2011-2014. BMC Geriatr 2024; 24:910. [PMID: 39501194 PMCID: PMC11536546 DOI: 10.1186/s12877-024-05503-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 10/22/2024] [Indexed: 11/09/2024] Open
Abstract
BACKGROUND The specific relationship between PA in detailed types and cognition is still unclear due to limited evidence. Our study aimed to investigate the relationship between cognitive performance and various aspects of physical activity, including overall activity, dosage, intensity levels [moderate physical activity (MPA), vigorous PA], and different domains of activity [occupational PA (OPA), transportation PA (TPA), and leisure-time PA (LTPA)] in older adults using data from the NHANES database. METHODS This cross-sectional analysis used data from 2 cycles of NHANES (2011-2014). PA was determined through participants' self-reports using the Global Physical Activity Questionnaire (GPAQ). Cognitive performance was evaluated by the presence of psychometric mild cognitive impairment (p-MCI), identified based on a composite measure derived from three cognitive tests including the Consortium to Establish a Registry for Alzheimer's Disease (CERAD), the Animal Fluency test, and the Digit Symbol Substitution test (DSST). Logistic regression models were used to evaluate the association. RESULTS A total of 2588 participants aged 60 years or older were included, with an average age of 69.4 years and 48% being male. In the fully adjusted model, compared to no PA, performing 300 min of PA, and MPA were associated with 44%, and 33% reductions in the prevalence of p-MCI, respectively. Additionally, engaging in 1-149 min/week [OR 0.56, 95% CI (0.33-0.92)] and ≥ 300 min/week [OR 0.66, 95% CI (0.44-0.96)] of OPA, as well as ≥ 300 min/week [OR 0.56, 95% CI (0.36-0.86)] of LTPA, were also associated with a lower prevalence of p-MCI. Additionally, engaging in a diverse range of PA had better outcomes. CONCLUSIONS Our results suggested a positive association between higher levels of PA and enhanced cognitive performance. Different intensities and domains of PA have varying impacts on cognition. Future exploration, such as objectively measured PA and longitudinal studies were needed to validate our conclusion.
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Affiliation(s)
- Si-Jia Li
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China
| | - Hao-Ming Ma
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China
| | - Ao-Qi Wang
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China
| | - Runyuan Pei
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China
| | - Xing-Yi Tang
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China
| | - Guang-Nan Liu
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China
| | - You Zhou
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China.
- Department of Nursing, The First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Chinese Medicine), No. 9 9th Street, Qiantang District, Hangzhou, Zhejiang, China.
| | - Mei-Hua Piao
- Chinese Academy of Medical Sciences, Peking Union Medical College School of Nursing, Beijing, China.
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Zhu J, Xu P, Yan W, Hu Y, Guo H, Chen F, Bigambo FM, Wang X. The influence of multivitamins on neurological and growth disorders: a cross-sectional study. Front Nutr 2024; 11:1465875. [PMID: 39385784 PMCID: PMC11463060 DOI: 10.3389/fnut.2024.1465875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 09/11/2024] [Indexed: 10/12/2024] Open
Abstract
Background While vitamin deficiencies can pose serious health consequences for the body, excessive intake of vitamins can also lead to health risks. However, there is limited data about the impact of multivitamins on neurological and growth disorders. This study aimed to investigate the relationship between multivitamins and neurological and growth disorders. Methods A cross-sectional study was conducted with 16,921 subjects who visited the Children's Hospital of Nanjing Medical University from 2019 to 2021. The subjects were categorized into two groups based on their health status including 9,368 cases (4,484 with neurological disorders and 4,884 with growth disorders) and 7,553 healthy controls. Statistical tests including the T-test, Wilcoxon Rank Sum test, and Chi-Square test were employed to compare the groups, and logistic regression and Weighted Quantile Sum (WQS) regression were used to identify associations. Results In the adjusted logistic regression, serum 25 hydroxyvitamin D [25(OH)D], vitamin B2, and vitamin B9 were associated with decreasing risks of neurological disorders, whereas vitamin A, vitamin B1, and vitamin B12 were associated with increasing risks of neurological disorders. Nevertheless, vitamin A and vitamin B2 were associated with increasing risks of growth disorders. In the WQS model, nine multivitamins were positively associated with risks of neurological disorders, and Vitamins D and C were weighted the most. In addition, the inverse association but not statistically significant was observed between multivitamins and growth disorders, particularly growth retardation revealed a negative association, and some individual growth disorders revealed positive associations including obesity and malnutrition. Conclusion In general, the study observed that multivitamins may be associated with neurological and growth disorders either positive or negative depending on the type of disorder.
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Affiliation(s)
- Jiaxiao Zhu
- Department of Pediatrics, Nanjing Medical University, Nanjing, China
| | - Penghong Xu
- Department of Emergency, Pediatric Intensive Care Unit, Children’s Hospital of Nanjing Medical University, Nanjing, China
| | - Wu Yan
- Clinical Research Center, Children's Hospital of Nanjing Medical University, Nanjing, China
| | - Yahui Hu
- Pharmaceutical Sciences Research Center, Department of Pharmacy, Children's Hospital of Nanjing Medical University, Nanjing, China
| | - Hongli Guo
- Pharmaceutical Sciences Research Center, Department of Pharmacy, Children's Hospital of Nanjing Medical University, Nanjing, China
| | - Feng Chen
- Pharmaceutical Sciences Research Center, Department of Pharmacy, Children's Hospital of Nanjing Medical University, Nanjing, China
| | | | - Xu Wang
- Clinical Research Center, Children's Hospital of Nanjing Medical University, Nanjing, China
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Ji K, Sun M, Li L, Hong Y, Yang S, Wu Y. Association between vitamin B2 intake and cognitive performance among older adults: a cross-sectional study from NHANES. Sci Rep 2024; 14:21930. [PMID: 39304710 DOI: 10.1038/s41598-024-72949-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 09/12/2024] [Indexed: 09/22/2024] Open
Abstract
The impact of vitamin B2 (riboflavin) intake on cognitive performance among older adults in the United States (US) remains inadequately understood. This study aimed to explore the association between vitamin B2 intake and cognitive performance among non-institutionalized elderly people in the US. Weighted logistic regression was used to evaluate the association between vitamin B2 intake and cognitive performance. Vitamin B2 intake was determined from the mean of two 24-hour dietary recall interviews. Three cognitive ability assessment tests, namely the Immediate Recall Test (IRT), Animal Fluency Test (AFT), and Digit Symbol Substitution Test (DSST), were performed. Participants included all older adults over 60 who underwent cognitive scoring, with cut-offs defined based on the lowest quartile (25th percentile) for each test (the cut-offs for the three scores were 15.625, 12, and 33, respectively). Sensitivity analysis, including dose-response curves, subgroup analyses, interaction effects, per 1 standard deviation (SD), recommended dietary allowance (RDA), and residual energy model analysis, were performed to solidify the solid association between vitamin B2 and cognitive performance. A total of 2893 individuals aged over 60 were included, with a mean age of 69 (7) years, and 46% were men. There was a significant association between vitamin B2 intake and all three cognitive scores (IRT, Odds Ratio = 0.77, 95% confidence interval: [0.65,0.92]; AFT, 0.75, [0.64,0.88]; DSST, 0.72, [0.59,0.88]). Moreover, vitamin B2 intake above the RDA reduced the risk of low cognitive performance (IRT, 0.66, [0.46,0.93]; AFT, 0.83, [0.62,1.11]; DSST, 0.65, [0.45,0.92]) compared to intake below the RDA. Dose-response curves indicated that higher vitamin B2 intake was negatively associated with the risk of low cognitive performance. Physical activity may modify the association between vitamin B2 and cognitive performance. Vitamin B2 intake was positively associated with cognitive performance among older adults. Adequate vitamin B2 intake could help protect cognitive function.
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Affiliation(s)
- Kangkang Ji
- Department of Clinical Medicine Research Centre, Binhai County People's Hospital, Yancheng, 224000, China
| | - Minli Sun
- Department of Geriatrics, Binhai County People's Hospital, Yancheng, 224000, China
| | - Li Li
- Department of Clinical Medicine Research Centre, Binhai County People's Hospital, Yancheng, 224000, China
| | - Ye Hong
- Department of Clinical Nutrition, Binhai County People's Hospital, Yancheng, 224000, China
| | - Shengkai Yang
- Department of Clinical Medicine Research Centre, Binhai County People's Hospital, Yancheng, 224000, China
| | - Yueju Wu
- Department of Clinical Medicine Research Centre, Binhai County People's Hospital, Yancheng, 224000, China.
- Department of Neurology, Binhai County People's Hospital, Yancheng, 224000, China.
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Zhou X, Azimi M, Handin N, Riselli A, Vora B, Chun E, Yee SW, Artursson P, Giacomini KM. Proteomic Profiling Reveals Age-Related Changes in Transporter Proteins in the Human Blood-Brain Barrier. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.26.604313. [PMID: 39091855 PMCID: PMC11291171 DOI: 10.1101/2024.07.26.604313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
The Blood-Brain Barrier (BBB) is a crucial, selective barrier that regulates the entry of molecules including nutrients, environmental toxins, and therapeutic medications into the brain. This function relies heavily on brain endothelial cell proteins, particularly transporters and tight junction proteins. The BBB continues to develop postnatally, adapting its selective barrier function across different developmental phases, and alters with aging and disease. Here we present a global proteomics analysis focused on the ontogeny and aging of proteins in human brain microvessels (BMVs), predominantly composed of brain endothelial cells. Our proteomic profiling quantified 6,223 proteins and revealed possible age-related alteration in BBB permeability due to basement membrane component changes through the early developmental stage and age-dependent changes in transporter expression. Notable changes in expression levels were observed with development and age in nutrient transporters and transporters that play critical roles in drug disposition. This research 1) provides important information on the mechanisms that drive changes in the metabolic content of the brain with age and 2) enables the creation of physiologically based pharmacokinetic models for CNS drug distribution across different life stages.
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Affiliation(s)
- Xujia Zhou
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
| | - Mina Azimi
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
| | - Niklas Handin
- Department of Pharmacy, Uppsala University, Uppsala, Sweden
| | - Andrew Riselli
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
| | - Bianca Vora
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
| | - Eden Chun
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
| | - Sook Wah Yee
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
| | - Per Artursson
- Department of Pharmacy, Uppsala University, Uppsala, Sweden
| | - Kathleen M Giacomini
- Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, United States
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Zhang K, Cai T, Han Y, Gu Z, Hu R, Hou Z, Yu X, Gao Y, Gao M, Liu T, Zhang Y. Association between dietary riboflavin intake and cognitive decline in older adults: a cross-sectional analysis. Nutr Neurosci 2024:1-10. [PMID: 39012764 DOI: 10.1080/1028415x.2024.2375171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2024]
Abstract
BACKGROUND Research exploring the link between dietary riboflavin intake and cognitive decline in this demographic is limited. Our aim was to examine the association between riboflavin intake levels and cognitive decline. METHODS The National Health and Nutrition Examination Survey (NHANES) data from 2011 to 2014 were utilized in this cross-sectional analysis. The Consortium to Establish a Registry for Alzheimer's Disease test Word Learning delayed recall trial (DR), Digit Symbol Substitution Test (DSST), Animal Fluency Test(AFT) and Z test were used to evaluate cognitive performance. Multivariate logistic regression, restricted cubic spline and subgroup analysis were performed to evaluate the associations between riboflavin intake and cognitive decline. RESULTS The study included a total of 2255 patients, with 47.9% being male. The incidence of cognitive decline was 23.8%. After adjusting for all selected covariates, we found that high riboflavin intake was associated with a lower risk of cognitive impairment in adults in the United States. When riboflavin intake was used as a Categorical variable, compared to those with the lowest intake, the odds ratio (OR) of individuals with the highest riboflavin intake for DR test, AFT test, DSST test and Z test were 0.73 (95% CI: 0.53~1), 0.68(95% CI: 0.49-0.96),0.53(95% CI: 0.37-0.77) and 0.56(95% CI: 0.39-0.8). The study also found an L-shaped association between riboflavin intake and cognitive decline, with an inflection point at approximately 2.984 mg/d. CONCLUSIONS Our cross-sectional study in a nationwide sample of American old adults suggests that dietary riboflavin intake was negative associated with cognitive decline.
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Affiliation(s)
- Kai Zhang
- Cardiovascular Surgery Department of Jilin University Second Hospital, Changchun, People's Republic of China
| | - Tianyi Cai
- Cardiovascular Surgery Department of Jilin University Second Hospital, Changchun, People's Republic of China
| | - Yu Han
- Department of Ophthalmology, First Hospital of Jilin University, Changchun, People's Republic of China
| | - Zhaoxuan Gu
- Bethune Second School of Clinical Medicine, Jilin University, Changchun, People's Republic of China
| | - Rui Hu
- Bethune Second School of Clinical Medicine, Jilin University, Changchun, People's Republic of China
| | - Zhengyan Hou
- Bethune Second School of Clinical Medicine, Jilin University, Changchun, People's Republic of China
| | - Xiaoqi Yu
- Bethune Second School of Clinical Medicine, Jilin University, Changchun, People's Republic of China
| | - Yafang Gao
- Bethune Second School of Clinical Medicine, Jilin University, Changchun, People's Republic of China
| | - Min Gao
- Department of Cancer Center, The First Hospital of Jilin University, Changchun, People's Republic of China
| | - Tianzhou Liu
- Department of Gastrointestinal Surgery, The Second Hospital of Jilin University, Changchun, People's Republic of China
| | - Yixin Zhang
- Department of Gastrointestinal Surgery, The Second Hospital of Jilin University, Changchun, People's Republic of China
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Jia W, Wang H, Li C, Shi J, Yong F, Jia H. Association between dietary vitamin B1 intake and cognitive function among older adults: a cross-sectional study. J Transl Med 2024; 22:165. [PMID: 38365743 PMCID: PMC10870482 DOI: 10.1186/s12967-024-04969-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 02/08/2024] [Indexed: 02/18/2024] Open
Abstract
BACKGROUND This study aims to investigate the relationship between vitamin B1 intake and cognitive function in older adults. METHODS This cross-sectional observational study utilized data from the National Health and Nutrition Examination Survey (NHANES) 2011-2014. A total of 2422 participants were included in the analysis, with dietary vitamin B1 intake being determined by averaging two 24-h dietary recalls. Cognitive function was assessed using three cognitive function tests: the Digit Symbol Substitution Test (DSST) for processing speed, the Animal Fluency Test (AFT) for executive function, a Consortium to Establish a Registry for Alzheimer's disease (CERAD) subtest for memory. Test-specific and global cognition z score was created. Multivariate linear regression models were used to explore the association between vitamin B1 and cognitive function. RESULTS 2422 participants, aged 60 years and older, were included from NHANES across two survey cycles (2011-2014). Higher vitamin B1 intake was associated with higher DSST, AFT scores (P < 0.001) as well as the global cognition z score (P = 0.008). In the fully adjusted model, as compared to the lowest quartile (Q1), the highest quartile (Q4) of vitamin B1 intake was related to higher DSST score (β = 2.23, 95% CI 0.79 ~ 3.67) and global cognition z sore (β = 0.09, 95% CI 0.02 ~ 0.16). The association between dietary vitamin B1 intake and cognitive function scores in US adults is linear. There was no detected significant statistical interaction between these variables. CONCLUSIONS Increased dietary intake of vitamin B1 was associated with better cognitive function in individuals aged over 60.
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Affiliation(s)
- Weiai Jia
- Department of Anesthesiology, The Fourth Hospital of Hebei Medical University, NO.12, JianKang Road, Shijiazhuang, 050011, Hebei, People's Republic of China
| | - Hemei Wang
- Department of Anesthesiology, The Fourth Hospital of Hebei Medical University, NO.12, JianKang Road, Shijiazhuang, 050011, Hebei, People's Republic of China
| | - Chao Li
- Department of Anesthesiology, The Fourth Hospital of Hebei Medical University, NO.12, JianKang Road, Shijiazhuang, 050011, Hebei, People's Republic of China
| | - Jingpu Shi
- Department of Anesthesiology, The Fourth Hospital of Hebei Medical University, NO.12, JianKang Road, Shijiazhuang, 050011, Hebei, People's Republic of China
| | - Fangfang Yong
- Department of Anesthesiology, The Fourth Hospital of Hebei Medical University, NO.12, JianKang Road, Shijiazhuang, 050011, Hebei, People's Republic of China
| | - Huiqun Jia
- Department of Anesthesiology, The Fourth Hospital of Hebei Medical University, NO.12, JianKang Road, Shijiazhuang, 050011, Hebei, People's Republic of China.
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