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For: Liu Z, Lin S, Piantadosi S. Network construction and structure detection with metagenomic count data. BioData Min 2015;8:40. [PMID: 26692900 PMCID: PMC4676895 DOI: 10.1186/s13040-015-0072-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Accepted: 11/18/2015] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
Tian J, Zhao B, Wang J, Du W, Ma W, Xia B, Xu H, Chen T, He X, Qin M. The short-term impact of comprehensive caries treatment on the supragingival microbiome of severe early childhood caries. Int J Paediatr Dent 2024;34:505-515. [PMID: 38173170 DOI: 10.1111/ipd.13151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 11/28/2023] [Accepted: 12/05/2023] [Indexed: 01/05/2024]
2
Veloso S, Amouroux D, Lanceleur L, Cagnon C, Monperrus M, Deborde J, Laureau CC, Duran R. Keystone microbial taxa organize micropollutant-related modules shaping the microbial community structure in estuarine sediments. JOURNAL OF HAZARDOUS MATERIALS 2023;448:130858. [PMID: 36706488 DOI: 10.1016/j.jhazmat.2023.130858] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 01/10/2023] [Accepted: 01/22/2023] [Indexed: 06/18/2023]
3
Liu Z. Clustering Single-Cell RNA-Seq Data with Regularized Gaussian Graphical Model. Genes (Basel) 2021;12:311. [PMID: 33671799 PMCID: PMC7927011 DOI: 10.3390/genes12020311] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Revised: 02/07/2021] [Accepted: 02/15/2021] [Indexed: 11/20/2022]  Open
4
Slizovskiy IB, Mukherjee K, Dean CJ, Boucher C, Noyes NR. Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful? Front Microbiol 2020;11:1376. [PMID: 32695079 PMCID: PMC7338343 DOI: 10.3389/fmicb.2020.01376] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 05/28/2020] [Indexed: 11/16/2022]  Open
5
Gysi DM, Nowick K. Construction, comparison and evolution of networks in life sciences and other disciplines. J R Soc Interface 2020;17:20190610. [PMID: 32370689 PMCID: PMC7276545 DOI: 10.1098/rsif.2019.0610] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 04/09/2020] [Indexed: 12/12/2022]  Open
6
Efficient Regularized Regression with L0 Penalty for Variable Selection and Network Construction. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2016;2016:3456153. [PMID: 27843486 PMCID: PMC5098106 DOI: 10.1155/2016/3456153] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Revised: 08/29/2016] [Accepted: 09/20/2016] [Indexed: 12/22/2022]
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