A video based feedback system for control of an active commutator during behavioral physiology

Computer vision-guided open-source active commutator for neural imaging in freely behaving animals

Significance

Recently developed miniaturized neural recording devices that can monitor and perturb neural activity in freely behaving animals have significantly expanded our knowledge of neural underpinning of complex behaviors. Most miniaturized neural interfaces require a wired connection for external power and data acquisition systems. The wires are required to be commutated through a slip ring to accommodate for twisting of the wire or tether and alleviate torsional stresses. The increased trend toward long-term continuous neural recordings has spurred efforts to realize active commutators that can sense the torsional stress and actively rotate the slip ring to alleviate torsional stresses. Current solutions however require the addition of sensing modules.

Aim

Here, we report on an active translating commutator that uses computer vision (CV) algorithms on behavioral imaging videos captured during the experiment to track the animal's position and heading direction in real time and uses this information to control the translation and rotation of a slip ring commutator to accommodate for accumulated mouse heading orientation changes and position.

Approach

The CV-guided active commutator has been extensively tested in three separate behavioral contexts.

Results

We show reliable cortex-wide imaging in a mouse in an open field with a miniaturized wide-field cortical imaging device. Active commutation resulted in no changes to measured neurophysiological signals.

Conclusion

The active commutator is fully open source, can be assembled using readily available off-the-shelf components, and is compatible with a wide variety of miniaturized neurophotonic and neurophysiology devices.

Customizable, wireless and implantable neural probe design and fabrication via 3D printing

This Protocol Extension describes the low-cost production of rapidly customizable optical neural probes for in vivo optogenetics. We detail the use of a 3D printer to fabricate minimally invasive microscale inorganic light-emitting-diode-based neural probes that can control neural circuit activity in freely behaving animals, thus extending the scope of two previously published protocols describing the fabrication and implementation of optoelectronic devices for studying intact neural systems. The 3D-printing fabrication process does not require extensive training and eliminates the need for expensive materials, specialized cleanroom facilities and time-consuming microfabrication techniques typical of conventional manufacturing processes. As a result, the design of the probes can be quickly optimized, on the basis of experimental need, reducing the cost and turnaround for customization. For example, 3D-printed probes can be customized to target multiple brain regions or scaled up for use in large animal models. This protocol comprises three procedures: (1) probe fabrication, (2) wireless module preparation and (3) implantation for in vivo assays. For experienced researchers, neural probe and wireless module fabrication requires ~2 d, while implantation should take 30-60 min per animal. Time required for behavioral assays will vary depending on the experimental design and should include at least 5 d of animal handling before implantation of the probe, to familiarize each animal to their handler, thus reducing handling stress that may influence the result of the behavioral assays. The implementation of customized probes improves the flexibility in optogenetic experimental design and increases access to wireless probes for in vivo optogenetic research.