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Jose J, Varughese JK, Parvez MK, Mathew TV. Probing the inhibition of MAO-B by chalcones: an integrated approach combining molecular docking, ADME analysis, MD simulation, and MM-PBSA calculations. J Mol Model 2024; 30:103. [PMID: 38478122 DOI: 10.1007/s00894-024-05889-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 02/26/2024] [Indexed: 04/06/2024]
Abstract
CONTEXT Monoamine oxidase B (MAO-B), an enzyme of significant relevance in the realm of neurodegenerative disorders, has garnered considerable attention as a potential target for therapeutic intervention. Natural compounds known as chalcones have shown potential as MAO-B inhibitors. In this particular study, we employed a multimodal computational method to evaluate the inhibitory effects of chalcones on MAO-B. METHODS Molecular docking methods were used to study and assess the complicated binding interactions that occur between chalcones and MAO-B. This extensive analysis provided a valuable and deep understanding of possible binding methods as well as the key residues implicated in the inhibition process. Furthermore, the ADME investigation gave valuable insights into the pharmacokinetic properties of chalcones. This allowed them to be assessed in terms of drug-like attributes. The use of MD simulations has benefited in the research of ligand-protein interactions' dynamic behaviour and temporal stability. MM-PBSA calculations were also done to estimate the binding free energies and acquire a better knowledge and understanding of the binding affinity between chalcones and MAO-B. Our thorough method gives a thorough knowledge of chalcones' potential as MAO-B inhibitors, which will be useful for future experimental validation and drug development efforts in the context of neurodegenerative illnesses.
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Affiliation(s)
- Jisna Jose
- Department of Chemistry, St. Thomas College, Palai, Arunapuram P.O., Kottayam, Kerala, 686574, India
| | - Jibin K Varughese
- Department of Chemistry, St. Thomas College, Palai, Arunapuram P.O., Kottayam, Kerala, 686574, India
| | - Mohammad Khalid Parvez
- Department of Pharmacognosy, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Thomas V Mathew
- Department of Chemistry, St. Thomas College, Palai, Arunapuram P.O., Kottayam, Kerala, 686574, India.
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2
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Baghirov MB, Muradov M, Eyvazova G, Azizian-Kalandaragh Y, Mammadyarova S, Kim J, Gasımov E, Rzayev F. Effect of sulphidation process on the structure, morphology and optical properties of GO/AgNWs composites. RSC Adv 2024; 14:2320-2326. [PMID: 38213967 PMCID: PMC10782283 DOI: 10.1039/d3ra08044g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 01/04/2024] [Indexed: 01/13/2024] Open
Abstract
In this study, composite materials composed of graphene oxide (GO) synthesized by a modified Hummers' method and silver nanowires (AgNWs) synthesized by a modified polyol method were prepared. The prepared composites were subjected to sulfidation under the influence of H2S gas. Structural changes in the samples were evaluated using X-ray diffraction (XRD). The binding nature of the composite was characterized using FT-IR spectroscopy. Optical properties and band gap values were investigated using ultraviolet-visible (UV-Vis) spectroscopy. The morphology of the composites was analyzed by transmission electron microscopy (TEM). A simple method using H2S gas was applied for the sulphidation process of the samples. The sulfidation process was successful under the influence of H2S gas, resulting in an increased distance between the GO layers and a decrease in the band gap value for the composite post-sulfidation. In addition, AgNWs were observed to decompose into Ag2S nanoparticles under the influence of H2S gas. It was determined that the value of the band gap of the sample changes because of sulphidation.
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Affiliation(s)
- Mahammad Baghir Baghirov
- Nano Research Laboratory, Baku State University 23 Academic Zahid Khalilov Street Baku AZ1148 Azerbaijan
| | - Mustafa Muradov
- Nano Research Laboratory, Baku State University 23 Academic Zahid Khalilov Street Baku AZ1148 Azerbaijan
| | - Goncha Eyvazova
- Nano Research Laboratory, Baku State University 23 Academic Zahid Khalilov Street Baku AZ1148 Azerbaijan
| | - Yashar Azizian-Kalandaragh
- Photonics Application and Research Center, Gazi University 06500 Ankara Turkey
- Photonics Department, Applied Science Faculty, Gazi University 06500 Ankara Turkey
| | - Sevinj Mammadyarova
- Nano Research Laboratory, Baku State University 23 Academic Zahid Khalilov Street Baku AZ1148 Azerbaijan
| | - Jiseok Kim
- Nano Research Laboratory, Baku State University 23 Academic Zahid Khalilov Street Baku AZ1148 Azerbaijan
| | - Eldar Gasımov
- Department of Cytology, Embryology and Histology, Azerbaijan Medical University Samad Vurghun Baku Nasimi AZ1022 Azerbaijan
| | - Fuad Rzayev
- Department of Electron Microscopy, Azerbaijan Medical University Samad Vurghun Baku Nasimi AZ1022 Azerbaijan
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Akila S, Vidhyasagar T, Winfred Jebaraj JP, Thiruvalluvar AA, Rajeswari K. Synthesis, crystal structure and computational analysis of 2,7-bis-(4-chloro-phen-yl)-3,3-dimethyl-1,4-diazepan-5-one. Acta Crystallogr E Crystallogr Commun 2023; 79:1212-1217. [PMID: 38313138 PMCID: PMC10833417 DOI: 10.1107/s2056989023010162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 11/23/2023] [Indexed: 02/06/2024]
Abstract
In the title compound, C19H20Cl2N2O, the seven-membered 1,4-diazepane ring adopts a chair conformation while the 4-chloro-phenyl substituents adopt equatorial orientations. The chloro-phenyl ring at position 7 is disordered over two positions [site occupancies 0.480 (16):0.520 (16)]. The dihedral angle between the two benzene rings is 63.0 (4)°. The methyl groups at position 3 have an axial and an equatorial orientation. The compound exists as a dimer exhibiting inter-molecular N-H⋯O hydrogen bonding with R 2 2(8) graph-set motifs. The crystal structure is further stabilized by C-H⋯O hydrogen bonds together with two C-Cl⋯π (ring) inter-actions. The geometry was optimized by DFT using the B3LYP/6-31 G(d,p) level basis set. In addition, the HOMO and LUMO energies, chemical reactivity parameters and mol-ecular electrostatic potential were calculated at the same level of theory. Hirshfeld surface analysis indicated that the most important contributions to the crystal packing are from H⋯H (45.6%), Cl⋯H/H⋯Cl (23.8%), H⋯C/C⋯H (12.6%), H⋯O/O⋯H (8.7%) and C⋯Cl/Cl⋯C (7.1%) inter-actions. Analysis of the inter-action energies showed that the dispersion energy is greater than the electrostatic energy. A crystal void volume of 237.16 Å3 is observed. A mol-ecular docking study with the human oestrogen receptor 3ERT protein revealed good docking with a score of -8.9 kcal mol-1.
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Affiliation(s)
- Shanmugasundaram Akila
- Department of Chemistry, Annamalai University, Annamalai Nagar 608 002, Tamil Nadu, India
| | - Thankakan Vidhyasagar
- Department of Chemistry, Annamalai University, Annamalai Nagar 608 002, Tamil Nadu, India
| | | | - Aravazhi Amalan Thiruvalluvar
- Principal (Retired), Kunthavai Naacchiyaar Government Arts College for Women (Autonomous), Thanjavur 613 007, Tamil Nadu, India
| | - Krishnan Rajeswari
- Department of Chemistry, Annamalai University, Annamalai Nagar 608 002, Tamil Nadu, India
- PG & Research Department of Chemistry, Government Arts College, Chidambaram 608 102, Tamil Nadu, India
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Sadoun AK, Gebreil A, Eltabey RM, Kospa DA, Ahmed AI, Ibrahim AA. Silver sulfide decorated carbonaceous sawdust/ES-PANI composites as salt-resistant solar steam generator. RSC Adv 2022; 12:28843-28852. [PMID: 36320508 PMCID: PMC9552864 DOI: 10.1039/d2ra04362a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/03/2022] [Indexed: 11/07/2022] Open
Abstract
Solar steam generation (SSG) is a potential approach for resolving the global water and energy crisis while causing the least amount of environmental damage. However, using adaptable photothermal absorbers with salt resistance through a simple, scalable, and cost-effective production approach is difficult. Herein, taking advantage of the ultra-fast water transportation in capillaries, and the large seawater storage capacity of wood, we develop a highly efficient natural evaporator. The wood wastes (sawdust) were carbonized at low temperatures to fabricate a green and low-cost carbonaceous porous material (CW). To enhance the salt resistance in high saline water, this evaporator was coated with polyaniline emeraldine salt (ES-PANI) which was synthesized through facile and cost-effective one-step oxidation of aniline. Furthermore, the composite was decorated with silver sulfide to increase the evaporation rate which reached up to 1.1 kg m−2 h−1 under 1 sun irradiation with 91.5% efficiency. Besides, the evaporator performs exceptionally well over 10 cycles due to the salt resistance capability of ES-PANI which generates a “Donnan exclusion” effect against cations in saline water. The Ag2S@PANI/CW evaporator may be a viable large-scale generator of drinking water due to its high efficiency for energy conversion, simple and low-cost fabrication approach, salt-resistance, and durability. Solar steam generation (SSG) is a potential approach for resolving the global water and energy crisis while causing the least amount of environmental damage.![]()
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Affiliation(s)
- Ahmed K. Sadoun
- Department of Chemistry, Faculty of Science, Mansoura UniversityAl-Mansoura 35516Egypt+20-1091313272
| | - Ahmed Gebreil
- Department of Chemistry, Faculty of Science, Mansoura UniversityAl-Mansoura 35516Egypt+20-1091313272,Nile Higher Institutes of Engineering and TechnologyEl-MansouraEgypt
| | - Rania M. Eltabey
- Department of Chemistry, Faculty of Science, Mansoura UniversityAl-Mansoura 35516Egypt+20-1091313272
| | - Doaa A. Kospa
- Department of Chemistry, Faculty of Science, Mansoura UniversityAl-Mansoura 35516Egypt+20-1091313272
| | - Awad I. Ahmed
- Department of Chemistry, Faculty of Science, Mansoura UniversityAl-Mansoura 35516Egypt+20-1091313272
| | - Amr Awad Ibrahim
- Department of Chemistry, Faculty of Science, Mansoura UniversityAl-Mansoura 35516Egypt+20-1091313272
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In-silico docking, synthesis, structure analysis, DFT calculations and energy frameworks of metal complexes to regress angiogenesis activity. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.132272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Li C, Chai Y, Chai L, Xu L. Novel zinc (II) and nickel (II) complexes of a quinazoline‐based ligand with an imidazole ring: synthesis, spectroscopic property, antibacterial activities, TD/DFT calculations and Hirshfeld surface analysis. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6622] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Cheng‐Guo Li
- School of Chemistry and Chemical Engineering Lanzhou Jiaotong University Lanzhou China
| | - Yong‐Mei Chai
- School of Chemistry and Chemical Engineering Lanzhou Jiaotong University Lanzhou China
| | - Lan‐Qin Chai
- School of Chemistry and Chemical Engineering Lanzhou Jiaotong University Lanzhou China
| | - Li‐Yan Xu
- School of Chemistry and Chemical Engineering Lanzhou Jiaotong University Lanzhou China
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Hughes DS, Bingham AL, Hursthouse MB, Threlfall TL, Bond AD. The extensive solid-form landscape of sulfathiazole: hydrogen-bond topology and node shape. CrystEngComm 2022. [DOI: 10.1039/d2ce00964a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Patterns of hydrogen bonds are described in a set of 101 crystal structures containing sulfathiazole. Topological analysis of the hydrogen-bond nets is augmented by comparison of the shapes of the nodes extracted from each net.
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Affiliation(s)
- David S. Hughes
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Ann L. Bingham
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
- CHEP, Faculty of Social Sciences, University of Southampton, SO17 1BJ, UK
| | - Michael B. Hursthouse
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Terry L. Threlfall
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Andrew D. Bond
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
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8
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Hughes DS, Bingham AL, Hursthouse MB, Threlfall TL, Bond AD. The extensive solid-form landscape of sulfathiazole: geometrical similarity and interaction energies. CrystEngComm 2022. [DOI: 10.1039/d1ce01516h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Sulfathiazole shows one of the most extensive solid-form landscapes known to date for an active pharmaceutical ingredient. A standardised structure set of 5 polymorphs, 59 co-crystals, 29 salts, and 3 other structures is established.
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Affiliation(s)
- David S. Hughes
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Ann L. Bingham
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Michael B. Hursthouse
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Terry L. Threlfall
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Andrew D. Bond
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
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9
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Russell JC, Lei H, Chaliparambil RK, Fish S, Markiewicz SM, Lee TI, Noori A, Kaeberlein M. Generation and characterization of a tractable C. elegans model of tauopathy. GeroScience 2021; 43:2621-2631. [PMID: 34536202 PMCID: PMC8599767 DOI: 10.1007/s11357-021-00436-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 08/09/2021] [Indexed: 12/20/2022] Open
Abstract
Alzheimer's disease(AD) is an age-associated neurodegenerative disease that results in deterioration of memory and cognitive function. As a currently untreatable disorder, AD has emerged as one of the defining biomedical challenges of our time. Thus, new approaches that can examine the cellular and molecular mechanisms underlying age-related AD pathology are sorely needed. One of the hallmarks of Alzheimer's disease is the hyperphosphorylation of the tau protein. Caenorhabditis elegans have been previously used to study the genetic pathways impacted by tau proteotoxic stress; however, currently, available C. elegans tau models express the human protein solely in neurons, which are unresponsive to global RNA interference (RNAi). This limits powerful RNAi screening methods from being utilized effectively in these disease models. Our goal was to develop a C. elegans tau model that has pronounced tau-induced disease phenotypes in cells that can be modified by feeding RNAi methods. Towards this end, we generated a novel C. elegans transgenic line with codon-optimized human 0N4R V337M tau expressed in the body wall muscle under the myo-3 promoter. Immunoblotting experiments revealed that the expressed tau is phosphorylated on epitopes canonically associated with human AD pathology. The tau line has significantly reduced health metrics, including egg laying, growth rate, paralysis, thrashing frequency, crawling speed, and lifespan. These defects are suppressed by RNAi directed against the tau mRNA. Taken together, our results suggest that this alternative tau genetic model could be a useful tool for uncovering the mechanisms that influence the hyperphosphorylation and toxicity of human tau via RNAi screening and other approaches.
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Affiliation(s)
- Joshua C Russell
- Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA.
| | - Haoyi Lei
- Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA
| | - Rahul K Chaliparambil
- Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA
| | | | | | - Ting-I Lee
- Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA
| | | | - Matt Kaeberlein
- Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA.
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Pandya KM, Battula S, Naik PJ. Pd-catalyzed post-Ugi intramolecular cyclization to the synthesis of isoquinolone-pyrazole hybrid pharmacophores & discover their antimicrobial and DFT studies. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2021.153353] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Zadeh Mehrizi T, Mousavi Hosseini K. An overview on the investigation of nanomaterials' effect on plasma components: immunoglobulins and coagulation factor VIII, 2010-2020 review. NANOSCALE ADVANCES 2021; 3:3730-3745. [PMID: 36133015 PMCID: PMC9419877 DOI: 10.1039/d1na00119a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 05/16/2021] [Indexed: 05/04/2023]
Abstract
FVIII and immunoglobulins (Igs) are the most prominent plasma proteins, which play a vital role in plasma hemostasis. These proteins have been implemented frequently in protein therapy. Therefore, their maintenance, durability, and stability are highly essential. Herein, various approaches to improve protein functions have been investigated, such as using recombinant protein replacement. In comparison, advances in nanotechnology have provided adequate context to boost biomaterial utilization. In this regard, the applications of various nanoparticles such as polymeric nanomaterials (PEG and PLGA), metal nanoparticles, dendrimers, and lipid based nanomaterials (liposomes and lipid nanoparticles) in stability and the functional improvement of antibodies and coagulation factor VIII (FVIII) have been reviewed from 2010 to 2020. Reviewing related articles has shown that not only can nanomaterials adequately protect the structure of proteins, but have also improved proteins' functions in some cases. For example, the high rate of FVIII instability has been successfully enhanced by bio-PEGylation. Also, utilizing PEGylated liposomes, using the PEG-lip technique for coating nanostructures, leads to FIIIV half-life prolongation. Hence, PEGylation had most impact on the stability of FVIII. Likewise, PEG-coated liposome nano-carriers also presented such a good effect on stability improvements for FVIII due to their ability to tune the immune system by reducing FVIII immunogenicity. Similarly, Ig PEGylation and conjugation to magnetic nanoparticles resulted in increased half-life and better purification of Igs, respectively, without any loss in structural or functional features. Consequently, metal-organic frameworks and recent hybrid systems have been introduced as promising nanomaterials in biomedical applications. As far as we know, this is the first study in this field, which considers the applications of nanoparticles for improving the storage and stability of antibodies and coagulation FVIII.
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Affiliation(s)
- Tahereh Zadeh Mehrizi
- Blood Transfusion Research Center, High Institute for Research and Education in Transfusion Medicine Tehran Iran +989338606292
| | - Kamran Mousavi Hosseini
- Blood Transfusion Research Center, High Institute for Research and Education in Transfusion Medicine Tehran Iran +989338606292
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Huang P, Jin LX, Lu JF, Gao YH, Guo SB. A theoretical study of radical scavenging antioxidant activity of 3-styrylchromone derivatives using DFT based on quantum chemical descriptors. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02754-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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13
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Chai L, Xu L, Zhang X, Li Y. Two dinuclear copper (II) and nickel (II) complexes based on 4‐(diethylamino)salicylaldehyde: X‐ray structures, spectroscopic, electrochemical, antibacterial, Hirshfeld surfaces analyses, and time‐dependent density functional theory calculations. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.6068] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Lan‐Qin Chai
- School of Chemical and Biological Engineering Lanzhou Jiaotong University Lanzhou China
| | - Li‐Yan Xu
- School of Chemical and Biological Engineering Lanzhou Jiaotong University Lanzhou China
| | - Xiao‐Fang Zhang
- School of Chemical and Biological Engineering Lanzhou Jiaotong University Lanzhou China
| | - Yao‐Xin Li
- School of Chemical and Biological Engineering Lanzhou Jiaotong University Lanzhou China
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Verma R, Rathod MJ, Goyal RK. High electromagnetic interference shielding of poly(ether-sulfone)/multi-walled carbon nanotube nanocomposites fabricated by an eco-friendly route. NANOTECHNOLOGY 2020; 31:385702. [PMID: 32470961 DOI: 10.1088/1361-6528/ab97d3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
High-performance polymer matrix nanocomposites based on poly(ether-sulfone) (PES) matrix reinforced with multi-walled carbon nanotubes (MWCNTs) were fabricated using planetary ball mill followed by hot pressing. Their electrical properties and the electromagnetic interference shielding effectiveness (EMI-SE) were investigated and discussed. A percolation threshold of about 0.65 vol% MWCNT was obtained. The electrical conductivity was increased by more than ten orders of magnitude at the percolation threshold and to approximately 0.01 S cm-1 at 6.67 vol% (or 10 wt%) MWCNT. This is a significant improvement. The highest EMI-SE of about 29-30 dB (both in the X-band and Ku-band) was obtained for the 6.67 vol% MWCNT filled nanocomposites with a thickness of 0.9 mm. The specific EMI-SE of these nanocomposites were found to be higher than the literature values. The thermal stability and the char yield (measured at 900 °C) of the nanocomposites were found to be more than 470 °C and 40.6%, respectively.
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Affiliation(s)
- R Verma
- Department of Metallurgy and Materials Science, College of Engineering, Pune, Maharashtra 411005, India
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Huang P, Zhao J, Gao YH, Jin LX, Wang Q, Yu XH, Ji XH, Lu JF. N-{2-[(2-chlorothieno[3,2-d]pyrimidin-4-yl)amino]ethyl}-3-methoxybenzamide: design, synthesis, crystal structure, antiproliferative activity, DFT, Hirshfeld surface analysis and molecular docking study. J Biomol Struct Dyn 2020; 40:787-795. [PMID: 32914698 DOI: 10.1080/07391102.2020.1819424] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
The compound N-{2-[(2-chlorothieno[3,2-d]pyrimidin-4-yl)amino]ethyl}-3-methoxybenzamide (8) was synthesized by the condensation of 3-methoxybenzoic acid (7) with N1-(2-chlorothieno[3,2-d]pyrimidin-4-yl)ethane-1,2-diamine (6). This intermediate was prepared from methyl 3-aminothiophene-2-carboxylate (1) by the condensation with urea, chlorination with phosphorus oxychloride and then condensation with ethane-1,2-diamine. The crystal structure of the title compound was determined and the crystal of the title compound belongs to the tetragonal system, space group P4(3) with a = 9.4694(10) Å, b = 9.4694(10) Å, c = 18.886(3) Å, α = 90°, β = 90°, γ = 90°. The optimized geometric bond lengths and bond angles obtained by using density functional theory (DFT) have been compared with X-ray diffraction values. The calculated HOMO and LUMO energies showed the character of the title compound. The molecular electrostatic potential (MEP) surface map of the related molecule was investigated with theoretical calculations at the B3LYP/6-311 + G(d,p) levels. A quantitative analysis of the intermolecular interactions in the crystal structures has been performed using Hirshfeld surface analysis. In addition, the title compound possesses marked inhibition against the proliferation of human colon cancer cell line HT-29 (IC50 = 1.76 μM), human lung adenocarcinoma cell line A549 (IC50 = 1.98 μM) and human gastric cancer cell line MKN45 (IC50 = 2.32 μM), displaying promising anticancer activitiy. The molecular docking studies revealed that the title compound may exhibit activity inhibiting PDB:3D15.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Pei Huang
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Juan Zhao
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Yan-Hong Gao
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Ling-Xia Jin
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Qin Wang
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Xiao-Hu Yu
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Xiao-Hui Ji
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
| | - Jiu-Fu Lu
- Shaanxi Key Laboratory of Catalysis, College of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong, China
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Lu JF, Huang P, Zhang D, Wang Q, Zheng N, Wu R, Liu Q, Jin LX, Yu XH, Ji XH, Gao YH, Ge HG. 1-(3-Amino-4-morpholino-1H-indazole-1-carbonyl)-N-phenylcyclopropane-1-carboxamide: Design, synthesis, crystal structure, antitumor activity, DFT and Hirshfeld surface analysis. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127996] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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17
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Singhapol C, Tinrat S. Virulence Genes Analysis of Vibrio parahaemolyticus and Anti-vibrio Activity of the Citrus Extracts. Curr Microbiol 2020; 77:1390-1398. [PMID: 32179973 DOI: 10.1007/s00284-020-01941-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Accepted: 03/02/2020] [Indexed: 10/24/2022]
Abstract
Vibrio parahaemolyticus (VP) is a marine bacterium that opportunistically caused foodborne gastroenteritis in human and some diseases in marine animals. The isolated strain of V. parahaemolyticus WS001 from Samut Sakhon, Thailand has a presence of ldh (~ 450 bp) toxA (~ 333 bp) and toxB (~ 1269 bp) genes which showed pathogenicity in shrimp. This strain is suspected as low pathogenicity in human due to the lack of tdh and trh genes for encoding thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH), respectively. The shrimp pathogenic strain was tested and revealed the multi-antibiotic resistances but was susceptible to norfloxacin (10 μg/ml). Citrus peel extracts were examined because they are rich in bioactive compounds such as saponins, tannins, flavonoids, steroids, and alkaloids that are effective in anti-VP activities. The ethanolic peel extracts of Citrus aurantifolia (Christm.) Swingle and Citrus hystrix DC. were found to be more anti-VP effect than other solvent extracts by Agar disc diffusion method at an optimum concentration of 50 mg/ml and Broth micro-dilution method (MICs of 50-100 mg/ml and MBCs of 100-200 mg/ml). Thus, C. aurantifolia (Christm.) Swingle peel extract was a distinctive candidate for the development of alternative natural agent to control the spreading of diseases in shrimp.
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Affiliation(s)
- Chatchawan Singhapol
- Department of Biotechnology, Faculty of Applied Science, King Mongkut's University of Technology North Bangkok, Bangkok, 10800, Thailand
| | - Sirikhwan Tinrat
- Department of Biotechnology, Faculty of Applied Science, King Mongkut's University of Technology North Bangkok, Bangkok, 10800, Thailand.
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Roy S, Dutta T, Drew MG, Chattopadhyay S. Phenoxazinone synthase mimicking activity of a dinuclear copper(II) complex with a half salen type Schiff base ligand. Polyhedron 2020. [DOI: 10.1016/j.poly.2019.114311] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Bibi A, Shah T, Sadiq A, Khalid N, Ullah F, Iqbal A. l-Isoleucine-catalyzed Michael Synthesis of N-Alkylsuccinimide Derivatives and Their Antioxidant Activity Assessment. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2020. [DOI: 10.1134/s1070428019110174] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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20
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Chen XR, Liu YY, Zhou YH, Xing XX, Qu QW, Chen XY, Ding WY, Cheng GL, Wei AJ, Feng XW, God'spower BO, Eliphaz N, Li YH. Process optimization of Syringa oblata Lindl. by response surface methodology and its effect on Staphylococcus xylosus biofilm. RSC Adv 2019; 9:36088-36096. [PMID: 35540619 PMCID: PMC9074935 DOI: 10.1039/c9ra06224f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Accepted: 10/22/2019] [Indexed: 11/21/2022] Open
Abstract
Syringa oblata Lindl. (S. oblata) is a medicinal plant with effective broad-spectrum antibacterial activity, which can also inhibit Streptococcus suis biofilm formation. The processing of herbal medicine can purify medicinal materials, provide acceptable taste, reduce toxicity, enhance efficacy, influence performance and facilitate preparation. Thus, the aim of this study was to enhance the biofilm inhibition activity of S. oblata toward Staphylococcus xylosus (S. xylosus) using the best processing method. The content of rutin and flavonoids and the ability to inhibit the biofilm formation by S. oblata were examined using four processing methods. One of the best methods, the process of stir-frying S. oblata with vinegar, was optimized based on the best rutin content by response surface methodology. The histidine content and hisB gene expression of S. xylosus biofilm in vitro, resulting from stir-frying S. oblata with vinegar, were evaluated and were found to be significantly decreased and down-regulated, respectively. The results show that S. oblata stir-fried with vinegar can be used to effectively treat diseases resulting from S. xylosus infection. This is because it significantly inhibited S. xylosus biofilm formation by interfering with the biosynthesis of histidine; thus, its mechanism of action is decreasing histidine synthesis.
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Affiliation(s)
- Xing-Ru Chen
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Yan-Yan Liu
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Yong-Hui Zhou
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Xiao-Xu Xing
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Qian-Wei Qu
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Xue-Ying Chen
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Wen-Ya Ding
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Guang-Long Cheng
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Ai-Juan Wei
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Xi-Wen Feng
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Bello-Onaghise God'spower
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Nsabimana Eliphaz
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
| | - Yan-Hua Li
- College of Veterinary Medicine, Northeast Agricultural University 600 Changjiang Road, Xiangfang Harbin Heilongjiang 150030 P. R. China +86 451 55191881
- Heilongjiang Key Laboratory for Animal Disease Control and Pharmaceutical Development Harbin China
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Zhou L, Huang PP, Chen LL, Wang P. Panax Notoginseng Saponins Ameliorate A β-Mediated Neurotoxicity in C. elegans through Antioxidant Activities. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE : ECAM 2019; 2019:7621043. [PMID: 31275419 PMCID: PMC6582912 DOI: 10.1155/2019/7621043] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 05/21/2019] [Indexed: 11/25/2022]
Abstract
The deposition of amyloid beta (Aβ) is the main hallmark of Alzheimer's disease (AD) and there is no effective drug to cure the progressive cognitive loss or memory deficits caused by the aggregative toxicity of Aβ protein. Oxidative stress has been hypothesized to play a role in progressive neurodegenerative diseases like AD. Panax notoginseng saponin (PNS) from the rhizome of "pseudo-ginseng" exhibits potent antioxidant effects on aging process in neuron cells and animals. By using C. elegans as an ideal model organism, the present study shows that PNS (0.5-4 mg/mL) can significantly inhibit AD-like symptoms of worm paralysis and enhance resistance to oxidative stress induced by paraquat and aging conditions. Additionally, PNS extends lifespan and maintains healthspan of C. elegans by improving the swimming prowess and fertility at old age. It markedly activates the expression of SKN-1 mRNA, which further supports SKN-1 signaling pathway which is involved in the therapeutic effect of PNS on AD C. elegans. Our results provide direct evidence on PNS for treating AD on gene level and theoretical foundation for reshaping medicinal products of PNS in the future.
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Affiliation(s)
- Ling Zhou
- School of Basic Medicine, Hubei University of Chinese Medicine, Wuhan 430065, China
| | - Pan-Pan Huang
- School of Basic Medicine, Hubei University of Chinese Medicine, Wuhan 430065, China
| | - Lin-Lin Chen
- Key Laboratory of Traditional Chinese Medicine Resource and Compound Prescription, Ministry of Education, Hubei University of Chinese Medicine, Wuhan 430065, China
| | - Ping Wang
- School of Basic Medicine, Hubei University of Chinese Medicine, Wuhan 430065, China
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Kharat S, Namdeo A, Mehta P. Development and validation of HPTLC method for simultaneous estimation of curcumin and galangin in polyherbal capsule dosage form. JOURNAL OF TAIBAH UNIVERSITY FOR SCIENCE 2018. [DOI: 10.1016/j.jtusci.2016.10.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Sharad Kharat
- Department of Quality Assurance, Bharati Vidyapeeth University, Poona College of Pharmacy, Pune 411038, India
| | - Ajay Namdeo
- Department of Pharmacognosy, Bharati Vidyapeeth University, Poona College of Pharmacy, Pune 411038, India
| | - Piyush Mehta
- Department of Quality Assurance, Bharati Vidyapeeth University, Poona College of Pharmacy, Pune 411038, India
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Determination of Abraham Model Correlations for Solute Transfer into Propyl Acetate Based on Experimental Activity Coefficient and Solubility Data. J SOLUTION CHEM 2018. [DOI: 10.1007/s10953-018-0743-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Gelbrich T, Langes C, Stefinovic M, Griesser UJ. Naloxegol hydrogen oxalate displaying a hydrogen-bonded layer structure. Acta Crystallogr E Crystallogr Commun 2018; 74:474-477. [PMID: 29765749 PMCID: PMC5946971 DOI: 10.1107/s2056989018003675] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Accepted: 03/02/2018] [Indexed: 11/10/2022]
Abstract
In the salt (5α,6α)-6-[(2,5,8,11,14,17,20-hepta-oxadocosan-22-yl)-oxy]-3,14-dihy-droxy-17-(prop-2-en-1-yl)-4,5-ep-oxy-morphinan-17-ium hydrogen oxalate, C34H54NO11+·C2HO4- the polyether unit of the naloxegol cation adopts the shape of a squashed open letter 'O'. In the crystal, the hydrogen oxalate anions are linked into a chain by O-H⋯O hydrogen bonds. Each naloxegol unit is hydrogen bonded to three hydrogen oxalate ions via two O-H⋯O and one N-H⋯O inter-actions. The resulting hydrogen-bonded two-dimensional layer structure is 3,5-connected and has the 3,5 L50 topology.
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Affiliation(s)
- Thomas Gelbrich
- University of Innsbruck, Institute of Pharmacy, Innrain 52, 6020 Innsbruck, Austria
| | - Christoph Langes
- University of Innsbruck, Institute of Pharmacy, Innrain 52, 6020 Innsbruck, Austria
| | | | - Ulrich J. Griesser
- University of Innsbruck, Institute of Pharmacy, Innrain 52, 6020 Innsbruck, Austria
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Gelbrich T, Adamer V, Stefinovic M, Thaler A, Griesser UJ. Hydrogen-bonded structures and interaction energies in two forms of the SGLT-2 inhibitor sotagliflozin. Acta Crystallogr C 2017; 73:718-723. [DOI: 10.1107/s2053229617011603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Accepted: 08/07/2017] [Indexed: 11/10/2022] Open
Abstract
The sotagliflozin molecule exhibits two fundamentally different molecular conformations in form 1 {systematic name: (2S,3R,4R,5S,6R)-2-[4-chloro-3-(4-ethoxybenzyl)phenyl]-6-(methylsulfanyl)tetrahydro-2H-pyran-3,4,5-triol, C21H25ClO5S, (I)} and the monohydrate [C21H25ClO5S·H2O, (II)]. Both crystals display hydrogen-bonded layers formed by intermolecular interactions which involve the three –OH groups of the xyloside fragment of the molecule. The layer architectures of (I) and (II) contain a non-hydrogen-bonded molecule–molecule interaction along the short crystallographic axis (a axis) whose total PIXEL energy exceeds that of each hydrogen-bonded molecule–molecule pair. The hydrogen-bonded layer of (I) has the topology of the 4-connected sql net and that formed by the water and sotagliflozin molecules of (II) has the topology of a 3,7-connected net.
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Affiliation(s)
- Ian A Tonks
- Department of Chemistry, University of Minnesota, Twin Cities, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, USA
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27
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Recent progress of structural study of polymorphic pharmaceutical drugs. Adv Drug Deliv Rev 2017; 117:71-85. [PMID: 27940141 DOI: 10.1016/j.addr.2016.12.001] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 12/02/2016] [Accepted: 12/06/2016] [Indexed: 12/20/2022]
Abstract
This review considers advances in the understanding of active pharmaceutical ingredient polymorphism since around 2010 mainly from a structural view point, with a focus on twelve model drugs. New polymorphs of most of these drugs have been identified despite that the polymorphism of these old drugs has been extensively studied so far. In addition to the conventional modifications of preparative solvents, temperatures, and pressure, more strategic structure-based methods have successfully yielded new polymorphs. The development of analytical techniques, including X-ray analyses, spectroscopy, and microscopy has facilitated the identification of unknown crystal structures and also the discovery of new polymorphs. Computational simulations have played an important role in explaining and predicting the stability order of polymorphs. Furthermore, these make significant contributions to the design of new polymorphs by considering structure and energy. The new technologies and insights discussed in this review will contribute to the control of polymorphic forms, both during manufacture and in the drug formulation.
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Hughes DS, Delori A, Rehman A, Jones W. Using crystallography, topology and graph set analysis for the description of the hydrogen bond network of triamterene: a rational approach to solid form selection. Chem Cent J 2017; 11:63. [PMID: 29086856 PMCID: PMC5509571 DOI: 10.1186/s13065-017-0293-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Accepted: 07/07/2017] [Indexed: 11/10/2022] Open
Abstract
This study has demonstrated the use of crystallography, topology and graph set analysis in the description and classification of the complex hydrogen bonded network of triamterene. The aim is to give a brief overview of the methodology used to discuss the crystal structure of triamterene with a view to extending the study to include the solvates, cocrystals and salts of this compound. Graphical abstract One of the structurally significant dimers (supramolecular synthons) of triamterene identified by this study.
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Affiliation(s)
- David S Hughes
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| | - Amit Delori
- Strathclyde Institute of Pharmacy and Biomedical Sciences (SIPBS), University of Strathclyde, 161 Cathedral Street, Glasgow, G4 0RE, UK
| | - Abida Rehman
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| | - William Jones
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
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Francis S, Joseph S, Koshy EP, Mathew B. Synthesis and characterization of multifunctional gold and silver nanoparticles using leaf extract ofNaregamia alataand their applications in the catalysis and control of mastitis. NEW J CHEM 2017. [DOI: 10.1039/c7nj02453c] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Phytoreduced nanoparticles have multi-functionalities due to their sustainable origin and biocompatible nature.
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Affiliation(s)
- Sijo Francis
- Department of Chemistry
- St. Joseph's College
- Moolamattom
- Idukki
- India
| | - Siby Joseph
- Department of Chemistry
- St. George's College
- Kottayam
- India
| | - Ebey P. Koshy
- Department of Chemistry
- St. Joseph's College
- Moolamattom
- Idukki
- India
| | - Beena Mathew
- School of Chemical Sciences
- Mahatma Gandhi University
- Kottayam-686560
- India
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Liu W, Guo Y, Chen J, Yu X. Measurement and Correlation of the Solubility of Telmisartan (Form A) in Nine Different Solvents from 277.85 to 338.35 K. J SOLUTION CHEM 2016. [DOI: 10.1007/s10953-016-0484-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Poornima Devi P, Kalaivani D. Crystal structure of creatininium 5-(2,4-di-nitro-phen-yl)-1,3-di-methyl-barbiturate monohydrate: a potential anti-convulsant agent. Acta Crystallogr E Crystallogr Commun 2016; 72:620-3. [PMID: 27308003 PMCID: PMC4908519 DOI: 10.1107/s2056989016005247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2016] [Accepted: 03/28/2016] [Indexed: 11/10/2022]
Abstract
In the anion of the title hydrated mol-ecular salt, C4H8N3O(+)·C12H9N4O7 (-)·H2O [systematic name: 2-amino-1-methyl-4-oxo-4,5-di-hydro-1H-imidazol-3-ium 5-(2,4-di-nitro-phen-yl)-1,3-dimethyl-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate monohydrate], the 2,4-di-nitro-phenyl ring is inclined to the mean plane of the pyrimidine ring [r.m.s. deviation = 0.37 Å] by 43.24 (8)°. The five-membered ring of the creatininium cation (2-amino-1-methyl-4-oxo-4,5-di-hydro-1H-imidazol-3-ium) is essentially planar with an r.m.s. deviation of 0.015 Å. In the crystal, the anions and cations are linked via N-H⋯O hydrogen bonds, forming sheets parallel to the ab plane. The sheets are linked via O-H⋯O hydrogen bonds involving the water mol-ecule, forming a three-dimensional framework. Within the framework, there are C-H⋯O hydrogen bonds present. The title mol-ecular salt displays anti-convulsant and hypnotic activities.
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Affiliation(s)
- Ponnusamy Poornima Devi
- PG and Research Department of Chemistry, Seethalakshmi Ramaswami College, Tiruchirappalli 620 002, Tamil Nadu, India
| | - Doraisamyraja Kalaivani
- PG and Research Department of Chemistry, Seethalakshmi Ramaswami College, Tiruchirappalli 620 002, Tamil Nadu, India
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The Hydrogen Bonded Structures of Two 5-Bromobarbituric Acids and Analysis of Unequal C5-X and C5-X' Bond Lengths (X = X' = F, Cl, Br or Me) in 5,5-Disubstituted Barbituric Acids. CRYSTALS 2016; 6:47. [PMID: 28670485 PMCID: PMC5493196 DOI: 10.3390/cryst6040047] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The crystal structure of the methanol hemisolvate of 5,5-dibromobarbituric acid (1MH) displays an H-bonded layer structure which is based on N–H⋯O=C, N–H⋯O(MeOH) and (MeOH)O–H⋯O interactions. The barbiturate molecules form an H-bonded substructure which has the fes topology. 5,5′-Methanediylbis(5-bromobarbituric acid) 2, obtained from a solution of 5,5-dibromobarbituric acid in nitromethane, displays a N–H⋯O=C bonded framework of the sxd type. The conformation of the pyridmidine ring and the lengths of the ring substituent bonds C5–X and C5–X′ in crystal forms of 5,5-dibromobarbituric acid and three closely related analogues (X = X′ = Br, Cl, F, Me) have been investigated. In each case, a conformation close to a C5-endo envelope is correlated with a significant lengthening of the axial C5–X′ in comparison to the equatorial C5–X bond. Isolated molecule geometry optimizations at different levels of theory confirm that the C5-endo envelope is the global conformational energy minimum of 5,5-dihalogenbarbituric acids. The relative lengthening of the axial bond is therefore interpreted as an inherent feature of the preferred envelope conformation of the pyrimidine ring, which minimizes repulsive interactions between the axial substituent and pyrimidine ring atoms.
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Gelbrich T, Braun DE, Griesser UJ. Specific energy contributions from competing hydrogen-bonded structures in six polymorphs of phenobarbital. Chem Cent J 2016; 10:8. [PMID: 26909105 PMCID: PMC4763432 DOI: 10.1186/s13065-016-0152-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 01/21/2016] [Indexed: 12/03/2022] Open
Abstract
Background In solid state structures of organic molecules, identical sets of H-bond donor and acceptor functions can result in a range of distinct H-bond connectivity modes. Specifically, competing H-bond structures (HBSs) may differ in the quantitative proportion between one-point and multiple-point H-bond connections. For an assessment of such HBSs, the effects of their internal as well as external (packing) interactions need to be taken into consideration. The semi-classical density sums (SCDS-PIXEL) method, which enables the calculation of interaction energies for molecule–molecule pairs, was used to investigate six polymorphs of phenobarbital (Pbtl) with different quantitative proportions of one-point and two-point H-bond connections. Results The structures of polymorphs V and VI of Pbtl were determined from single crystal data. Two-point H-bond connections are inherently inflexible in their geometry and lie within a small PIXEL energy range (−45.7 to −49.7 kJ mol−1). One-point H-bond connections are geometrically less restricted and subsequently show large variations in their dispersion terms and total energies (−23.1 to −40.5 kJ mol−1). The comparison of sums of interaction energies in small clusters containing only the strongest intermolecular interactions showed an advantage for compact HBSs with multiple-point connections, whereas alternative HBSs based on one-point connections may enable more favourable overall packing interactions (i.e. V vs. III). Energy penalties associated with experimental intramolecular geometries relative to the global conformational energy minimum were calculated and used to correct total PIXEL energies. The estimated order of stabilities (based on PIXEL energies) is III > I > II > VI > X > V, with a difference of just 1.7 kJ mol−1 between the three most stable forms. Conclusions For an analysis of competing HBSs, one has to consider the contributions from internal H-bond and non-H-bond interactions, from the packing of multiple HBS instances and intramolecular energy penalties. A compact HBS based on multiple-point H-bond connections should typically lead to more packing alternatives and ultimately to a larger number of viable low-energy structures than a competing one-point HBS (i.e. dimer vs. catemer). Coulombic interaction energies associated with typical short intermolecular C–H···O contact geometries are small in comparison with dispersion effects associated with the packing complementary molecular shapes.Competing H-bond motifs can differ markedly in their energy contributions ![]() Electronic supplementary material The online version of this article (doi:10.1186/s13065-016-0152-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Thomas Gelbrich
- Institute of Pharmacy, University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria
| | - Doris E Braun
- Institute of Pharmacy, University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria
| | - Ulrich J Griesser
- Institute of Pharmacy, University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria
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Constructor Graphs as Useful Tools for the Classification of Hydrogen Bonded Solids: The Case Study of the Cationic (Dimethylphosphoryl)methanaminium (dpmaH+) Tecton. CRYSTALS 2015. [DOI: 10.3390/cryst6010006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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35
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Gelbrich T, Griesser UJ. Crystal structure of 5-hy-droxy-5-propyl-barbituric acid. Acta Crystallogr E Crystallogr Commun 2015; 71:1311-4. [PMID: 26594498 PMCID: PMC4645085 DOI: 10.1107/s2056989015018769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Accepted: 10/06/2015] [Indexed: 05/23/2024]
Abstract
Mol-ecules of the title compound, C7H10N2O4, systematic name 5-hy-droxy-5-propyl-pyrimidine-2,4,6(1H,3H,5H)-trione, form a hydrogen-bonded framework which is based on three independent hydrogen bonds, N-H⋯O(carbon-yl), N-H⋯O(hy-droxy) and O-H⋯O(carbon-yl). This framework has the topology of the 5-connected nov net. Each mol-ecule is linked to five other mol-ecules via six hydrogen bonds, and the descriptor of the hydrogen-bonded structure is F65[4(4).6(6)-nov]. The crystal packing is isostructural with that of the previously reported 5-hy-droxy-5-ethyl analogue.
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Affiliation(s)
- Thomas Gelbrich
- University of Innsbruck, Institute of Pharmacy, Innrain 52, 6020 Innsbruck, Austria
| | - Ulrich J. Griesser
- University of Innsbruck, Institute of Pharmacy, Innrain 52, 6020 Innsbruck, Austria
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Kahlenberg V, Gelbrich T, Tessadri R, Klauser F. Crystal structure of cis-diamminebis(nitrito-κN)platinum(II). Acta Crystallogr E Crystallogr Commun 2015; 71:366-70. [PMID: 26029392 PMCID: PMC4438797 DOI: 10.1107/s2056989015004879] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2015] [Accepted: 03/10/2015] [Indexed: 12/03/2022]
Abstract
Single crystals of cis-[Pt(NO2)2(NH3)2], were obtained by means of hyper-saturation directly out of a plating electrolyte. The square-planar coordination environment of the divalent Pt(II) atom is formed by four N atoms belonging to two ammine and two monodentate nitrite ligands. The ligands adopt a cis configuration. The crystal structure contains stacks of close-packed mol-ecules which run parallel to [001]. There are nine crystallographically independent inter-molecular N-H⋯O hydrogen bonds, resulting in a hydrogen-bonded hxl-type framework in which each mol-ecule serves as an eight-connected node. Four of the nine distinct hydrogen bonds connect complexes which belong to the same close-packed column parallel to [001]. In contrast to the previously reported crystal structure of the trans isomer, the title structure does not display intra-molecular hydrogen bonding.
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Affiliation(s)
- Volker Kahlenberg
- University of Innsbruck, Institute of Mineralogy & Petrography, Innrain 52, A-6020 Innsbruck, Austria
| | - Thomas Gelbrich
- University of Innsbruck, Institute of Pharmacy, Innrain 80, 6020 Innsbruck, Austria
| | - Richard Tessadri
- University of Innsbruck, Institute of Mineralogy & Petrography, Innrain 52, A-6020 Innsbruck, Austria
| | - Frederik Klauser
- MED-EL Medical Electronics, Fürstenweg 77a, A-6020 Innsbruck, Austria
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