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Cao F, Wu Y, Xu L, Song X, Ding J. Microbial community changes and metabolic pathways analysis during waste activated sludge and meat processing waste anaerobic co-digestion. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 363:121444. [PMID: 38852403 DOI: 10.1016/j.jenvman.2024.121444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 05/22/2024] [Accepted: 06/07/2024] [Indexed: 06/11/2024]
Abstract
Waste activated sludge (WAS) and meat processing waste (MPW) were acted as co-substrates in anaerobic co-digestion (AcD), and biochemical methane potential (BMP) test was carried out to investigate the methane production performances. Microbial community structure and metabolic pathways analyses were conducted by 16S rRNA high-throughput sequencing and functional prediction analysis. BMP test results indicated that AcD of 70% WAS+30% MPW and 50% WAS+50% MPW (VS/VS) could significantly improve methane yield to 371.05 mL/g VS and 599.61 mL/g VS, respectively, compared with WAS acting as sole substrate (191.87 mL/g VS). The results of microbial community analysis showed that Syntrophomonas and Petrimonas became the dominant bacteria genera, and Methanomassiliicoccus and Methanobacterium became the dominant archaea genera after MPW addition. 16S functional prediction analysis results indicated that genes expression of key enzymes involved in syntrophic acetate oxidation (SAO), hydrogenotrophic and methylotrophic methanogenesis were up-regulated, and acetoclastic methanogenesis was inhibited after MPW addition. Based on these analyses, it could be inferred that SAO combined with hydrogenotrophic and methylotrophic methanogenesis was the dominant pathway for organics degradation and methane production during AcD. These findings provided systematic insights into the microbial community changes and metabolic pathways during AcD of WAS and MPW.
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Affiliation(s)
- Fang Cao
- College of Environmental Science and Engineering, Taiyuan University of Technology, 209 Daxue Road, Jinzhong, 030600, PR China
| | - Yuqi Wu
- College of Environmental Science and Engineering, Taiyuan University of Technology, 209 Daxue Road, Jinzhong, 030600, PR China.
| | - Longmei Xu
- College of Environmental Science and Engineering, Taiyuan University of Technology, 209 Daxue Road, Jinzhong, 030600, PR China
| | - Xiulan Song
- College of Environmental Science and Engineering, Taiyuan University of Technology, 209 Daxue Road, Jinzhong, 030600, PR China
| | - Jianzhi Ding
- Taiyuan Design Research Institute for Coal Industry, 18 Qingnian Road, Taiyuan, 030001, PR China
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2
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Shakeri Yekta S, Svensson BH, Skyllberg U, Schnürer A. Sulfide in engineered methanogenic systems - Friend or foe? Biotechnol Adv 2023; 69:108249. [PMID: 37666371 DOI: 10.1016/j.biotechadv.2023.108249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 07/27/2023] [Accepted: 08/31/2023] [Indexed: 09/06/2023]
Abstract
Sulfide ions are regarded to be toxic to microorganisms in engineered methanogenic systems (EMS), where organic substances are anaerobically converted to products such as methane, hydrogen, alcohols, and carboxylic acids. A vast body of research has addressed solutions to mitigate process disturbances associated with high sulfide levels, yet the established paradigm has drawn the attention away from the multifaceted sulfide interactions with minerals, organics, microbial interfaces and their implications for performance of EMS. This brief review brings forward sulfide-derived pathways other than toxicity and with potential significance for anaerobic organic matter degradation. Available evidence on sulfide reactions with organic matter, interventions with key microbial metabolisms, and interspecies electron transfer are critically synthesized as a guidance for comprehending the sulfide effects on EMS apart from the microbial toxicity. The outcomes identify existing knowledge gaps and specify future research needs as a step forward towards realizing the potential of sulfide-derived mechanisms in diversifying and optimizing EMS applications.
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Affiliation(s)
- Sepehr Shakeri Yekta
- Department of Thematic Studies - Environmental Change, Linköping University, 58183 Linköping, Sweden; Biogas Solutions Research Center, Linköping University, 58183 Linköping, Sweden.
| | - Bo H Svensson
- Department of Thematic Studies - Environmental Change, Linköping University, 58183 Linköping, Sweden; Biogas Solutions Research Center, Linköping University, 58183 Linköping, Sweden
| | - Ulf Skyllberg
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden
| | - Anna Schnürer
- Biogas Solutions Research Center, Linköping University, 58183 Linköping, Sweden; Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, 75007 Uppsala, Sweden
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3
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Wan R, Zha Y, Wu M, Li X, Yang H, Liu H. Long-term effective remediation of black-odorous water via regulating calcium nitrate sustained-release. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:1065. [PMID: 37598137 DOI: 10.1007/s10661-023-11659-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 08/01/2023] [Indexed: 08/21/2023]
Abstract
Nitrate addition is reported as a cost-effective method for remediating black-odorous water, which is mainly induced by the deficiency of electron acceptor. However, excessive release of nitrate and lack of long-term effectiveness significantly limited the application of direct nitrate dosing technology. Herein, for remediating black-odorous water, we constructed a nitrate sustained-release ecological concrete (ecoN-concrete), in which calcium nitrate (Ca(NO3)2) was dosed into concrete block to regulate the release of nitrate. The results showed that chemical oxygen demand (COD), turbidity, ammonia, phosphate, and sulfate were significantly removed in an ecoN-concrete-contained reactor fed with black-odorous water, and its removal efficiency was largely dependent on Ca(NO3)2 dosage. Meanwhile, the released nitrate was lower than 25% of its total dosage and nitrite was lower than 1.5 mg/L during 14 days remediation. After three recycles, the removal efficiencies of COD and turbidity by using ecoN-concrete were still more than 85%, indicating an excellent nitrate sustained-release performance of ecoN-concrete, which can be applied for preventing water re-blackening and re-stinking. Further investigation illustrated that the ecoN-concrete (1) decreased the abundance of Desulfovibrio, Desulfomonile, and Desulforhabdus in the phylum of Desulfobacterota to alleviate the odorous gas production and (2) significantly increased the abundance of Bacillus and Thermomonas, which utilized the released-nitrate for consuming organic matters and ammonia. This study provided an artful Ca(NO3)2 dosing strategy and long-term effective method for black-odorous water remediation.
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Affiliation(s)
- Rui Wan
- School of Ecology and Environment, Anhui Normal University, Wuhu, 241002, China.
| | - Yunyi Zha
- School of Ecology and Environment, Anhui Normal University, Wuhu, 241002, China
| | - Mengqi Wu
- School of Ecology and Environment, Anhui Normal University, Wuhu, 241002, China
| | - Xiaoxiao Li
- School of Ecology and Environment, Anhui Normal University, Wuhu, 241002, China
- College of Environment, Hohai University, Nanjing, 210098, China
| | - Haifeng Yang
- Donghu Innovation Center, Anhui Phoneya Environmental Technology Co. Ltd, Hefei, 230601, China
| | - Hongming Liu
- College of Life Sciences, Anhui Normal University, Wuhu, 241001, China
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4
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Fernández-Domínguez D, Yekta SS, Hedenström M, Patureau D, Jimenez J. Deciphering the contribution of microbial biomass to the properties of dissolved and particulate organic matter in anaerobic digestates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 877:162882. [PMID: 36934942 DOI: 10.1016/j.scitotenv.2023.162882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 02/28/2023] [Accepted: 03/11/2023] [Indexed: 05/06/2023]
Abstract
The recalcitrant structures either from substrate or microbial biomass contained in digestates after anaerobic digestion (AD) highly influence digestate valorization. To properly assess the microbial biomass contribution to the digested organic matter (OM), a combination of characterization methods and the use of various substrate types in anaerobic continuous reactors was required. The use of totally biodegradable substrates allowed detecting soluble microbial products via fluorescence spectroscopy at emission wavelengths of 420 and 460 nm while the protein-like signature was enhanced by the whey protein. During reactors' operation, a transfer of complex compounds to the dissolved OM from the particulate OM was observed through fluorescence applied on biochemical fractionation. Consequently, the fluorescence complexity index of the dissolved OM increased from 0.59-0.60 to 1.06-1.07, whereas it decreased inversely for the extractable soluble from the particulate OM from 1.16-1.19 to 0.42-0.54. Accordingly, fluorescence regional integration showed differences among reactors based on visual inspection and orthogonal partial latent structures (OPLS) analysis. Similarly, the impact of the substrate type and operation time on the particulate OM was revealed by 13C nuclear magnetic resonance using OPLS, providing a good model (R2X = 0.93 and Q2 = 0.8) with a clear time-trend. A high signal resonated at ∼30 ppm attributed to CH2-groups in the aliphatic chain of lipid-like structure besides carbohydrates intensities at 60-110 ppm distinguished the reactor fed with whey protein from the other, which was mostly biomass related. Indeed, this latter displayed a higher presence of peptidoglycan (δH/C: 1.6-2.0/20-25 ppm) derived from microbial biomass by 1H-13C heteronuclear single-quantum coherence (HSQC) nuclear magnetic resonance. Interestingly, the sample distribution obtained by non-metric multidimensional scaling of bacterial communities resembled the attained using 13C NMR properties, opening new research perspectives. Overall, this study discloses the microbial biomass contribution to digestates composition to improve the OM transformation mechanism knowledge.
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Affiliation(s)
| | - Sepehr Shakeri Yekta
- Department of Thematic Studies-Environmental Change and Biogas Research Center, Linköping University, 581 83 Linköping, Sweden
| | | | - Dominique Patureau
- INRAE, Univ. Montpellier, LBE, 102 Avenue des étangs, 11100 Narbonne, France
| | - Julie Jimenez
- INRAE, Univ. Montpellier, LBE, 102 Avenue des étangs, 11100 Narbonne, France
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5
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Hashemi S, Solli L, Lien KM, Lamb JJ, Horn SJ. Culture adaptation for enhanced biogas production from birch wood applying stable carbon isotope analysis to monitor changes in the microbial community. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:77. [PMID: 37149601 PMCID: PMC10163780 DOI: 10.1186/s13068-023-02328-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 04/24/2023] [Indexed: 05/08/2023]
Abstract
Birch wood is a potential feedstock for biogas production in Northern Europe; however, the lignocellulosic matrix is recalcitrant preventing efficient conversion to methane. To improve digestibility, birch wood was thermally pre-treated using steam explosion at 220 °C for 10 min. The steam-exploded birch wood (SEBW) was co-digested with cow manure for a period of 120 days in continuously fed CSTRs where the microbial community adapted to the SEBW feedstock. Changes in the microbial community were tracked by stable carbon isotopes- and 16S r RNA analyses. The results showed that the adapted microbial culture could increase methane production up to 365 mL/g VS day, which is higher than previously reported methane production from pre-treated SEBW. This study also revealed that the microbial adaptation significantly increased the tolerance of the microbial community against the inhibitors furfural and HMF which were formed during pre-treatment of birch. The results of the microbial analysis indicated that the relative amount of cellulosic hydrolytic microorganisms (e.g. Actinobacteriota and Fibrobacterota) increased and replaced syntrophic acetate bacteria (e.g. Cloacimonadota, Dethiobacteraceae, and Syntrophomonadaceae) as a function of time. Moreover, the stable carbon isotope analysis indicated that the acetoclastic pathway became the main route for methane production after long-term adaptation. The shift in methane production pathway and change in microbial community shows that for anaerobic digestion of SEBW, the hydrolysis step is important. Although acetoclastic methanogens became dominant after 120 days, a potential route for methane production could also be a direct electron transfer among Sedimentibacter and methanogen archaea.
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Affiliation(s)
- Seyedbehnam Hashemi
- Department of Energy and Process Engineering, Norwegian University of Science and Technology (NTNU), 7034, Trondheim, Norway.
| | - Linn Solli
- Norwegian Institute of Bioeconomy Research (NIBIO), 1433, Ås, Norway
| | - Kristian M Lien
- Department of Energy and Process Engineering, Norwegian University of Science and Technology (NTNU), 7034, Trondheim, Norway
| | - Jacob J Lamb
- Department of Energy and Process Engineering, Norwegian University of Science and Technology (NTNU), 7034, Trondheim, Norway
| | - Svein Jarle Horn
- Norwegian Institute of Bioeconomy Research (NIBIO), 1433, Ås, Norway
- Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
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6
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Liu YC, Ramiro-Garcia J, Paulo LM, Maria Braguglia C, Cristina Gagliano M, O'Flaherty V. Psychrophilic and mesophilic anaerobic treatment of synthetic dairy wastewater with long chain fatty acids: Process performances and microbial community dynamics. BIORESOURCE TECHNOLOGY 2023; 380:129124. [PMID: 37127168 DOI: 10.1016/j.biortech.2023.129124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 04/25/2023] [Accepted: 04/28/2023] [Indexed: 05/03/2023]
Abstract
Facilitating the anaerobic degradation of long chain fatty acids (LCFA) is the key to unlock the energy potential of lipids-rich wastewater. In this study, the feasibility of psychrophilic anaerobic treatment of LCFA-containing dairy wastewater was assessed and compared to mesophilic anaerobic treatment. The results showed that psychrophilic treatment at 15 ℃ was feasible for LCFA-containing dairy wastewater, with high removal rates of soluble COD (>90%) and LCFA (∼100%). However, efficient long-term treatment required prior acclimation of the biomass to psychrophilic temperatures. The microbial community analysis revealed that putative syntrophic fatty acid bacteria and Methanocorpusculum played a crucial role in LCFA degradation during both mesophilic and psychrophilic treatments. Additionally, a fungal-bacterial biofilm was found to be important during the psychrophilic treatment. Overall, these findings demonstrate the potential of psychrophilic anaerobic treatment for industrial wastewaters and highlight the importance of understanding the microbial communities involved in the process.
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Affiliation(s)
- Yu-Chen Liu
- Microbial Ecology Laboratory, School of Biological and Chemical Sciences and Ryan Institute, University of Galway, University Road, Galway, H91 TK33, Ireland.
| | - Javier Ramiro-Garcia
- Instituto de la Grasa. Consejo Superior de Investigaciones Científicas. Campus Universitario Pablo de Olavide- Ed. 46, Ctra. de Utrera, km. 1, Seville 41013, Spain
| | - Lara M Paulo
- Microbial Ecology Laboratory, School of Biological and Chemical Sciences and Ryan Institute, University of Galway, University Road, Galway, H91 TK33, Ireland
| | - Camilla Maria Braguglia
- Water Research institute, CNR, Area di Ricerca RM1-Montelibretti, Via Salaria km 29.300, 00015 Monterotondo (Roma), Italy
| | - Maria Cristina Gagliano
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, MA 8911 Leeuwarden, the Netherlands
| | - Vincent O'Flaherty
- Microbial Ecology Laboratory, School of Biological and Chemical Sciences and Ryan Institute, University of Galway, University Road, Galway, H91 TK33, Ireland
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7
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Cuetero-Martínez Y, Flores-Ramírez A, De Los Cobos-Vasconcelos D, Aguirre-Garrido JF, López-Vidal Y, Noyola A. Removal of bacterial pathogens and antibiotic resistance bacteria by anaerobic sludge digestion with thermal hydrolysis pre-treatment and alkaline stabilization post-treatment. CHEMOSPHERE 2023; 313:137383. [PMID: 36436581 DOI: 10.1016/j.chemosphere.2022.137383] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 11/22/2022] [Accepted: 11/23/2022] [Indexed: 06/16/2023]
Abstract
Primary sludge (PS) is associated with public health and environmental risks, so regulations focus on reducing the pathogenic and heavy metal contents of the treated material (biosolids), intended for soil amendments and land reclamation. The regulations set limits for Escherichia coli (or fecal coliforms), Salmonella spp., helminth eggs and enterovirus. However, the potential risk due to antibiotic resistant bacteria (ARB) and other human potential pathogenic bacteria (HPB) are not considered. In this work, three sludge treatment processes, having in common an anaerobic digestion step, were applied to assess the removal of regulated bacteria (fecal coliforms, Salmonella spp), ARB and HPB. The treatment arrangements, fed with PS from a full-scale wastewater treatment plant were: 1) Mesophilic anaerobic digestion followed by alkaline stabilization post-treatment (MAD-CaO); 2) Thermophilic anaerobic digestion (TAD) and, 3) Pre-treatment (mild thermo-hydrolysis) followed by TAD (PT-TAD). The results address the identification, quantification (colony forming units) and taxonomic characterization of ARB resistant to β-lactams and vancomycin, as well as the taxonomic characterization of HPB by sequencing with PacBio. In addition, quantification based on culture media of fecal coliforms and Salmonella spp. is presented. The capabilities and limitations of microbiological and metataxonomomic analyses based on PacBio sequencing are discussed, emphasizing that they complement each other. Genus Aeromonas, Acinetobacter, Citrobacter, Enterobacter, Escherichia, Klebsiella, Ochrobactrum, Pseudomonas and Raoultella, among others, were found in the PS, which are of clinical or environmental importance, being either HPB, HPB-ARB, or non-pathogenic ARB with the potentiality of horizontal gene transfer. Based on the analysis of fecal coliforms and Salmonella spp., the three processes produced class A (highest) biosolids, suitable for unrestricted agriculture applications. Mild thermo-hydrolisis was effective in decreasing ARB cultivability, but it reappeared after the following TAD. O. intermedium (HPB-ARB) was enriched in MAD and TAD while Laribacter hongkongensis (HPB) did persist after the applied treatments.
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Affiliation(s)
- Yovany Cuetero-Martínez
- Subdirección de Hidráulica y Ambiental, Instituto de Ingeniería, Universidad Nacional Autónoma de México, 04510 CDMX, Mexico; Doctorado en Ciencias Bioquímicas, Universidad Nacional Autónoma de México, 04510 CDMX, Mexico
| | - Aarón Flores-Ramírez
- Subdirección de Hidráulica y Ambiental, Instituto de Ingeniería, Universidad Nacional Autónoma de México, 04510 CDMX, Mexico
| | - Daniel De Los Cobos-Vasconcelos
- Subdirección de Hidráulica y Ambiental, Instituto de Ingeniería, Universidad Nacional Autónoma de México, 04510 CDMX, Mexico
| | - José Félix Aguirre-Garrido
- Departamento de Ciencias Ambientales, Universidad Autónoma Metropolitana - Unidad Lerma, 52005 Lerma de Villada, Edo. Mex, Mexico
| | - Yolanda López-Vidal
- Departamento de Microbiología y Parasitología, Facultad de Medicina, Universidad Nacional Autónoma de México, 04510 CDMX, Mexico
| | - Adalberto Noyola
- Subdirección de Hidráulica y Ambiental, Instituto de Ingeniería, Universidad Nacional Autónoma de México, 04510 CDMX, Mexico.
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8
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Xu W, He X, Wang C, Zhao Z. Effect of granular activated carbon adsorption and size of microbial aggregates in inoculum on stimulating direct interspecies electron transfer during anaerobic digestion of fat, oil, and grease. BIORESOURCE TECHNOLOGY 2023; 368:128289. [PMID: 36372383 DOI: 10.1016/j.biortech.2022.128289] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Revised: 11/01/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
To investigate the effect of granular activated carbon (GAC) adsorption and size of microbial aggregates in inoculum on stimulating direct interspecies electron transfer (DIET) during anaerobic digestion of fat, oil, and grease (FOG), seed sludge was divided into two inocula (big (>0.85 mm)/small (0.15-0.85 mm)) for FOG digestion with/without GAC. More long-chain fatty acids (LCFAs) were adsorbed on GAC in the reactor with small aggregates than that with big aggregates, corresponding to 57 % and 10 % decreased methane production, respectively. Adsorption of unsaturated LCFAs (e.g., oleic acid) on GAC was found to reduce LCFA bioavailability, hinder DIET via GAC, and change community structure. Compared to pre-adsorption of oleic acid on GAC, pre-attachment of microbes on GAC resulted in 5.6-fold higher methane yield for oleic acid digestion. Together, competition of LCFA adsorption between GAC and microbial aggregates is essential for enhanced methane recovery from FOG digestion via GAC-induced DIET.
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Affiliation(s)
- Weijia Xu
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Xia He
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China; Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin 541006, China.
| | - Chun Wang
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Zihao Zhao
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
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9
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Vasquez-Cardenas D, Hidalgo-Martinez S, Hulst L, Thorleifsdottir T, Helgason GV, Eiriksson T, Geelhoed JS, Agustsson T, Moodley L, Meysman FJR. Biogeochemical impacts of fish farming on coastal sediments: Insights into the functional role of cable bacteria. Front Microbiol 2022; 13:1034401. [PMID: 36620049 PMCID: PMC9814725 DOI: 10.3389/fmicb.2022.1034401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 12/05/2022] [Indexed: 12/24/2022] Open
Abstract
Fish farming in sea cages is a growing component of the global food industry. A prominent ecosystem impact of this industry is the increase in the downward flux of organic matter, which stimulates anaerobic mineralization and sulfide production in underlying sediments. When free sulfide is released to the overlying water, this can have a toxic effect on local marine ecosystems. The microbially-mediated process of sulfide oxidation has the potential to be an important natural mitigation and prevention strategy that has not been studied in fish farm sediments. We examined the microbial community composition (DNA-based 16S rRNA gene) underneath two active fish farms on the Southwestern coast of Iceland and performed laboratory incubations of resident sediment. Field observations confirmed the strong geochemical impact of fish farming on the sediment (up to 150 m away from cages). Sulfide accumulation was evidenced under the cages congruent with a higher supply of degradable organic matter from the cages. Phylogenetically diverse microbes capable of sulfide detoxification were present in the field sediment as well as in lab incubations, including cable bacteria (Candidatus Electrothrix), which display a unique metabolism based on long-distance electron transport. Microsensor profiling revealed that the activity of cable bacteria did not exert a dominant impact on the geochemistry of fish farm sediment at the time of sampling. However, laboratory incubations that mimic the recovery process during fallowing, revealed successful enrichment of cable bacteria within weeks, with concomitant high sulfur-oxidizing activity. Overall our results give insight into the role of microbially-mediated sulfide detoxification in aquaculture impacted sediments.
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Affiliation(s)
- Diana Vasquez-Cardenas
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands,Geobiology, Department of Biology, University of Antwerp, Antwerp, Belgium,*Correspondence: Diana Vasquez-Cardenas,
| | | | - Lucas Hulst
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands
| | | | | | | | | | | | - Leon Moodley
- NORCE Norwegian Research Centre, Randaberg, Norway
| | - Filip J. R. Meysman
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands,Geobiology, Department of Biology, University of Antwerp, Antwerp, Belgium
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10
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Johnson LA, Hug LA. Cloacimonadota metabolisms include adaptations in engineered environments that are reflected in the evolutionary history of the phylum. ENVIRONMENTAL MICROBIOLOGY REPORTS 2022; 14:520-529. [PMID: 35365914 DOI: 10.1111/1758-2229.13061] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 03/19/2022] [Indexed: 06/14/2023]
Abstract
Phylum Cloacimonadota (previously Cloacimonetes, WWE1) is an understudied bacterial lineage frequently associated with engineered and wastewater systems. Cloacimonadota members were abundant and diverse in metagenomic datasets from a municipal landfill, prompting an examination of phylogenetic relationships, metabolic diversity, and pangenomic dynamics across the phylum, based on the 30 publicly available genomes and 24 new metagenome-assembled genomes (MAGs) from landfill samples. We found that Cloacimonadota have distinct evolutionary histories associated with engineered versus natural environments and identified genomic features and metabolic strategies that correlate to habitat of origin. Metabolic reconstructions for MAGs predict an anaerobic, acetogenic, and mixed fermentative and flavin-bifurcation-based anaerobic respiratory lifestyle for the majority of Cloacimonadota surveyed. Genomes from engineered ecosystems encode a suite of genes not typically found in genomes from natural environments including acetate kinase, genes for cysteine degradation to pyruvate, increased diversity of carbon utilization enzymes, and different mechanisms for generating membrane potential and ATP synthesis. This phylum-level examination also clarifies the distribution of functions previously observed for members of the phylum, where propionate oxidation and reverse TCA cycles are not common components of Cloacimonadota metabolism.
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Affiliation(s)
- Lisa A Johnson
- Department of Biology, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada
| | - Laura A Hug
- Department of Biology, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada
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11
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Shakeri Yekta S, Elreedy A, Liu T, Hedenström M, Isaksson S, Fujii M, Schnürer A. Influence of cysteine, serine, sulfate, and sulfide on anaerobic conversion of unsaturated long-chain fatty acid, oleate, to methane. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 817:152967. [PMID: 35016947 DOI: 10.1016/j.scitotenv.2022.152967] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 12/21/2021] [Accepted: 01/04/2022] [Indexed: 06/14/2023]
Abstract
This study aims to elucidate the role of sulfide and its precursors in anaerobic digestion (i.e., cysteine, representing sulfur-containing amino acids, and sulfate) on microbial oleate conversion to methane. Serine, with a similar structure to cysteine but with a hydroxyl group instead of a thiol, was included as a control to assess potential effects on methane formation that were not related to sulfur functionalities. The results showed that copresence of sulfide and oleate in anaerobic batch assays accelerated the methane formation compared to assays with only oleate and mitigated negative effect on methane formation caused by increased sulfide level. Nuclear magnetic resonance spectroscopy of sulfide-exposed oleate suggested that sulfide reaction with oleate double bonds likely contributed to negation of the negative effect on the methanogenic activity. Methane formation from oleate was also accelerated in the presence of cysteine or serine, while sulfate decreased the cumulative methane formation from oleate. Neither cysteine nor serine was converted to methane, and their accelerating effects was associated to different mechanisms due to establishment of microbial communities with different structures, as evidenced by high-throughput sequencing of 16S rRNA gene. These outcomes contribute with new knowledge to develop strategies for optimum use of sulfur- and lipid-rich wastes in anaerobic digestion processes.
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Affiliation(s)
- Sepehr Shakeri Yekta
- Department of Thematic Studies - Environmental Change, Linköping University, 58183 Linköping, Sweden; Biogas Research Center, Linköping University, 58183 Linköping, Sweden.
| | - Ahmed Elreedy
- Department of Civil and Environmental Engineering, Tokyo Institute of Technology, 152-8550 Tokyo, Japan; Institute of Technical Microbiology, Hamburg University of Technology, 21073 Hamburg, Germany
| | - Tong Liu
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, 75007 Uppsala, Sweden; Biogas Research Center, Linköping University, 58183 Linköping, Sweden
| | | | - Simon Isaksson
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, 75007 Uppsala, Sweden
| | - Manabu Fujii
- Department of Civil and Environmental Engineering, Tokyo Institute of Technology, 152-8550 Tokyo, Japan
| | - Anna Schnürer
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, 75007 Uppsala, Sweden; Biogas Research Center, Linköping University, 58183 Linköping, Sweden
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12
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Ci M, Yang W, Jin H, Hu L, Fang C, Shen D, Long Y. Evolution of sulfate reduction behavior in leachate saturated zones in landfills. WASTE MANAGEMENT (NEW YORK, N.Y.) 2022; 141:52-62. [PMID: 35093856 DOI: 10.1016/j.wasman.2022.01.031] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 01/17/2022] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
The sulfate reduction behavior of the landfill leachate saturated zone under different temperatures was investigated. The results showed that temperature had significant effects on sulfate reduction behavior. The sulfate reduction efficiency was the highest at high temperatures (55 °C and 45 °C), followed by mesophilic temperature (35 °C). Normal temperature 25 °C was far less effective than 55 °C, 45 °C and 35 °C. High abundances of aprA and dsrA genes were distributed under high temperatures. Through indicator species analysis and functional comparison, some key taxa were identified as putative key genera for sulfate reduction. Under high temperature, Paenibacillus could effectively degrade dimethyl sulfide. DsrAB is present in the genome of Tissierella. Gordonia, Syntrophomonas, and Lysinibacillus under mesophilic temperature indicates the potential of these organisms to degrade heterogenous biomass, environmental pollutants or other natural polymers with slow biodegradation. This microbial function is similar to that of the putative key genera under normal (25 °C) temperature. Most of the putative key genera belong to Firmicutes, Proteobacteria and Myxococcota. This study provides theoretical support for the control of hydrogen sulfide release from landfills.
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Affiliation(s)
- Manting Ci
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Instrumental Analysis Center, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Wenyi Yang
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Instrumental Analysis Center, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Haihong Jin
- Zhejiang Hongyi Environmental Protection Technology Co. Ltd, Hangzhou 310000, China
| | - Lifang Hu
- College of Quality and Safety Engineering, Institution of Industrial Carbon Metrology, China Jiliang University, Hangzhou 310018, China.
| | - Chengran Fang
- College of Civil Engineering, Zhejiang University of Technology, Hangzhou 310023, China
| | - Dongsheng Shen
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Instrumental Analysis Center, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Yuyang Long
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Instrumental Analysis Center, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China.
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13
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Williams TJ, Allen MA, Berengut JF, Cavicchioli R. Shedding Light on Microbial "Dark Matter": Insights Into Novel Cloacimonadota and Omnitrophota From an Antarctic Lake. Front Microbiol 2021; 12:741077. [PMID: 34707591 PMCID: PMC8542988 DOI: 10.3389/fmicb.2021.741077] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 09/13/2021] [Indexed: 11/13/2022] Open
Abstract
The potential metabolism and ecological roles of many microbial taxa remain unknown because insufficient genomic data are available to assess their functional potential. Two such microbial "dark matter" taxa are the Candidatus bacterial phyla Cloacimonadota and Omnitrophota, both of which have been identified in global anoxic environments, including (but not limited to) organic-carbon-rich lakes. Using 24 metagenome-assembled genomes (MAGs) obtained from an Antarctic lake (Ace Lake, Vestfold Hills), novel lineages and novel metabolic traits were identified for both phyla. The Cloacimonadota MAGs exhibited a capacity for carbon fixation using the reverse tricarboxylic acid cycle driven by oxidation of hydrogen and sulfur. Certain Cloacimonadota MAGs encoded proteins that possess dockerin and cohesin domains, which is consistent with the assembly of extracellular cellulosome-like structures that are used for degradation of polypeptides and polysaccharides. The Omnitrophota MAGs represented phylogenetically diverse taxa that were predicted to possess a strong biosynthetic capacity for amino acids, nucleosides, fatty acids, and essential cofactors. All of the Omnitrophota were inferred to be obligate fermentative heterotrophs that utilize a relatively narrow range of organic compounds, have an incomplete tricarboxylic acid cycle, and possess a single hydrogenase gene important for achieving redox balance in the cell. We reason that both Cloacimonadota and Omnitrophota form metabolic interactions with hydrogen-consuming partners (methanogens and Desulfobacterota, respectively) and, therefore, occupy specific niches in Ace Lake.
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Affiliation(s)
- Timothy J Williams
- School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, NSW, Australia
| | - Michelle A Allen
- School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, NSW, Australia
| | - Jonathan F Berengut
- EMBL Australia Node for Single Molecule Science, School of Medical Sciences, UNSW Sydney, Kensington, NSW, Australia
| | - Ricardo Cavicchioli
- School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, NSW, Australia
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14
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Shakeri Yekta S, Liu T, Mendes Anacleto T, Axelsson Bjerg M, Šafarič L, Goux X, Karlsson A, Björn A, Schnürer A. Effluent solids recirculation to municipal sludge digesters enhances long-chain fatty acids degradation capacity. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:56. [PMID: 33663594 PMCID: PMC7934545 DOI: 10.1186/s13068-021-01913-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Accepted: 02/21/2021] [Indexed: 06/05/2023]
Abstract
BACKGROUND Slow degradation kinetics of long-chain fatty acids (LCFA) and their accumulation in anaerobic digesters disrupt methanogenic activity and biogas production at high loads of waste lipids. In this study, we evaluated the effect of effluent solids recirculation on microbial LCFA (oleate) degradation capacity in continuous stirred-tank sludge digesters, with the overall aim of providing operating conditions for efficient co-digestion of waste lipids. Furthermore, the impacts of LCFA feeding frequency and sulfide on process performance and microbial community dynamics were investigated, as parameters that were previously shown to be influential on LCFA conversion to biogas. RESULTS Effluent solids recirculation to municipal sludge digesters enabled biogas production of up to 78% of the theoretical potential from 1.0 g oleate l-1 day-1. In digesters without effluent recirculation, comparable conversion efficiency could only be reached at oleate loading rates up to 0.5 g l-1 day-1. Pulse feeding of oleate (supplementation of 2.0 g oleate l-1 every second day instead of 1.0 g oleate l-1 every day) did not have a substantial impact on the degree of oleate conversion to biogas in the digesters that operated with effluent recirculation, while it marginally enhanced oleate conversion to biogas in the digesters without effluent recirculation. Next-generation sequencing of 16S rRNA gene amplicons of bacteria and archaea revealed that pulse feeding resulted in prevalence of fatty acid-degrading Smithella when effluent recirculation was applied, whereas Candidatus Cloacimonas prevailed after pulse feeding of oleate in the digesters without effluent recirculation. Combined oleate pulse feeding and elevated sulfide level contributed to increased relative abundance of LCFA-degrading Syntrophomonas and enhanced conversion efficiency of oleate, but only in the digesters without effluent recirculation. CONCLUSIONS Effluent solids recirculation improves microbial LCFA degradation capacity, providing possibilities for co-digestion of larger amounts of waste lipids with municipal sludge.
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Affiliation(s)
- Sepehr Shakeri Yekta
- Department of Thematic Studies-Environmental Change, Linköping University, 58183, Linköping, Sweden.
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden.
| | - Tong Liu
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, 75007, Uppsala, Sweden
| | - Thuane Mendes Anacleto
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Federal University of Rio de Janeiro, Rio de Janeiro, 21941-901, Brazil
| | - Mette Axelsson Bjerg
- Department of Thematic Studies-Environmental Change, Linköping University, 58183, Linköping, Sweden
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden
| | - Luka Šafarič
- Department of Thematic Studies-Environmental Change, Linköping University, 58183, Linköping, Sweden
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden
| | - Xavier Goux
- Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 4422, Belvaux, Luxembourg
| | - Anna Karlsson
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden
- Scandinavian Biogas Fuels AB, 11160, Stockholm, Sweden
| | - Annika Björn
- Department of Thematic Studies-Environmental Change, Linköping University, 58183, Linköping, Sweden
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden
| | - Anna Schnürer
- Biogas Research Center, Linköping University, 58183, Linköping, Sweden
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, 75007, Uppsala, Sweden
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15
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Liu T, Schnürer A, Björkmalm J, Willquist K, Kreuger E. Diversity and Abundance of Microbial Communities in UASB Reactors during Methane Production from Hydrolyzed Wheat Straw and Lucerne. Microorganisms 2020; 8:E1394. [PMID: 32932830 PMCID: PMC7565072 DOI: 10.3390/microorganisms8091394] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 09/04/2020] [Accepted: 09/09/2020] [Indexed: 01/04/2023] Open
Abstract
The use of straw for biofuel production is encouraged by the European Union. A previous study showed the feasibility of producing biomethane in upflow anaerobic sludge blanket (UASB) reactors using hydrolyzed, steam-pretreated wheat straw, before and after dark fermentation with Caldicellulosiruptor saccharolyticus, and lucerne. This study provides information on overall microbial community development in those UASB processes and changes related to acidification. The bacterial and archaeal community in granular samples was analyzed using high-throughput amplicon sequencing. Anaerobic digestion model no. 1 (ADM1) was used to predict the abundance of microbial functional groups. The sequencing results showed decreased richness and diversity in the microbial community, and decreased relative abundance of bacteria in relation to archaea, after process acidification. Canonical correspondence analysis showed significant negative correlations between the concentration of organic acids and three phyla, and positive correlations with seven phyla. Organic loading rate and total COD fed also showed significant correlations with microbial community structure, which changed over time. ADM1 predicted a decrease in acetate degraders after a decrease to pH ≤ 6.5. Acidification had a sustained effect on the microbial community and process performance.
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Affiliation(s)
- Tong Liu
- Department of Molecular Science, Swedish University of Agricultural Science, Uppsala BioCenter, 750 07 Uppsala, Sweden;
| | - Anna Schnürer
- Department of Molecular Science, Swedish University of Agricultural Science, Uppsala BioCenter, 750 07 Uppsala, Sweden;
| | - Johanna Björkmalm
- RISE, Forskningsbyn Ideon Scheelevägen 27, 223 70 Lund, Sweden; (J.B.); (K.W.)
| | - Karin Willquist
- RISE, Forskningsbyn Ideon Scheelevägen 27, 223 70 Lund, Sweden; (J.B.); (K.W.)
| | - Emma Kreuger
- Division of Biotechnology, Department of Chemistry, Lund University, P.O. Box 118, 221 00 Lund, Sweden
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