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Jinatham V, Yowang A, Stensvold CR, Michalopoulou E, Vichasilp T, Suwannahitatorn P, Popluechai S, Tsaousis AD, Gentekaki E. Blastocystis colonization and associations with population parameters in Thai adults. PLoS Negl Trop Dis 2024; 18:e0012292. [PMID: 38980911 PMCID: PMC11259296 DOI: 10.1371/journal.pntd.0012292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 07/19/2024] [Accepted: 06/13/2024] [Indexed: 07/11/2024] Open
Abstract
BACKGROUND Blastocystis is a unicellular eukaryote commonly found in the intestinal tract of humans and other animals. The prevalence of Blastocystis has been investigated in both developed and developing countries, yet its occurrence and distribution in rural locations has been less studied. Herein, we aimed to examine the distribution of Blastocystis colonization in Thai adults representing background populations along a rural/peri-urban gradient, as well as associations between colonization and personal characteristics. METHODOLOGY A total of 238 participants were recruited from rural and peri-urban areas situated in three provinces. The presence of Blastocystis in feces was evaluated using PCR and qPCR. Information on gender, age, region (province), rural/peri-urban location, and body mass index (BMI) was collected. PRINCIPAL FINDINGS The overall rate of Blastocystis carriage was 67.2%. Univariate analysis revealed significant associations between Blastocystis carriage and region (p<0.05), location (p<0.001) and age group (p<0.05). Logistic regression analysis revealed that rural/peri-urban location and BMI were significantly associated with Blastocystis carriage. Nine subtypes (ST1-ST7, ST10 and ST23) were identified with ST3, ST7 and ST1 as the most abundant ones, in this order. The greatest diversity of subtypes, in terms of numbers, was found in the middle aged group (nine subtypes), while the least diversity was found in the young adult and obese (three subtypes each) groups. CONCLUSIONS This study increases the understanding of the epidemiology of Blastocystis colonization and its association with population parameters and characteristics in middle-income countries.
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Affiliation(s)
- Vasana Jinatham
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Amara Yowang
- Regional Medical Sciences Center 1/1 Chiang Rai, Department of Medical Sciences, Ministry of Public Health, Chiang Rai, Thailand
| | | | - Eleni Michalopoulou
- Department of Veterinary Medicine, University of Nicosia School of Veterinary Medicine, Nicosia, Cyprus
| | | | | | - Siam Popluechai
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
- Gut Microbiome Research Group, Mae Fah Luang University, Chiang Rai, Thailand
| | - Anastasios D. Tsaousis
- Laboratory of Molecular and Evolutionary Parasitology, RAPID group, School of Biosciences, University of Kent, Canterbury, United Kingdom
| | - Eleni Gentekaki
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
- Department of Veterinary Medicine, University of Nicosia School of Veterinary Medicine, Nicosia, Cyprus
- Gut Microbiome Research Group, Mae Fah Luang University, Chiang Rai, Thailand
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Fusaro C, Bernal JE, Baldiris-Ávila R, González-Cuello R, Cisneros-Lorduy J, Reales-Ruiz A, Castro-Orozco R, Sarria-Guzmán Y. Molecular Prevalence and Subtypes Distribution of Blastocystis spp. in Humans of Latin America: A Systematic Review. Trop Med Infect Dis 2024; 9:38. [PMID: 38393127 PMCID: PMC10893338 DOI: 10.3390/tropicalmed9020038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/21/2024] [Accepted: 01/24/2024] [Indexed: 02/25/2024] Open
Abstract
Blastocystis spp. are among the few enteric parasites with a prevalence that can reach up to approximately 80% in communities of developing countries. This systematic review updates and summarizes available literature on the molecular prevalence and subtype distribution of Blastocystis spp. in Latin American people. This work follows the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines. The literature revised covers from 1 January 2015 to 6 October 2023 in seven different scientific databases, and the material was selected through inclusion and exclusion criteria. According to data found in the 36 selected articles, the prevalence of Blastocystis spp. in Latin America ranged between 5.8% (Bolivian rural communities) and 94.0% (Colombian general public). Generally, genomic DNA was extracted from approximately 200 mg fecal sediments using commercial kits, such as the QIAamp Stool Mini Kit (QIAGEN, Hilden, Germany) or the Norgen Stool DNA Isolation Kit (Norgen Biotek Corporation, Thorold, ON, Canada). Subtype-specific primers (such as the couple of primers BhRDr-RD5) developed from unique sequences of the SSU rRNA gene were applied to Blastocystis subtyping. Ten specific subtypes (STs) were found as well as various mixed infections, and the most circulating Blastocystis STs were in the order ST3, ST1, ST2, and ST4. The most recent data about Blastocystis spp. molecular epidemiology and the STs in communities of Latin America are limited to studies from specific countries. Novel scientific data from the other countries are required to obtain a complete picture and truly understand the distribution and prevalence of Blastocystis spp. and the STs.
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Affiliation(s)
- Carmine Fusaro
- Facultad de Ingenierías, Universidad de San Buenaventura, Cartagena de Indias, Bolivar 130010, Colombia; (C.F.); (J.C.-L.); (A.R.-R.)
| | - Jaime E. Bernal
- Facultad de Medicina, Universidad del Sinú, Cartagena de Indias, Bolivar 130001, Colombia;
| | - Rosa Baldiris-Ávila
- Facultad de Ciencias Exactas y Naturales, Universidad de Cartagena, Cartagena de Indias, Bolivar 13001, Colombia;
| | - Rafael González-Cuello
- Facultad de Ingeniería, Universidad de Cartagena, Cartagena de Indias, Bolivar 130015, Colombia;
| | - Julio Cisneros-Lorduy
- Facultad de Ingenierías, Universidad de San Buenaventura, Cartagena de Indias, Bolivar 130010, Colombia; (C.F.); (J.C.-L.); (A.R.-R.)
| | - Arley Reales-Ruiz
- Facultad de Ingenierías, Universidad de San Buenaventura, Cartagena de Indias, Bolivar 130010, Colombia; (C.F.); (J.C.-L.); (A.R.-R.)
| | - Raimundo Castro-Orozco
- Facultad de Ciencias de la Salud, Universidad de San Buenaventura, Cartagena de Indias, Bolivar 130010, Colombia;
| | - Yohanna Sarria-Guzmán
- Facultad de Ingeniería, Universidad de Cartagena, Cartagena de Indias, Bolivar 130015, Colombia;
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Alexeree SMI, Abou-Seri HM, El-Din HES, Youssef D, Ramadan MA. Green synthesis of silver and iron oxide nanoparticles mediated photothermal effects on Blastocystis hominis. Lasers Med Sci 2024; 39:43. [PMID: 38246979 PMCID: PMC10800310 DOI: 10.1007/s10103-024-03984-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 01/05/2024] [Indexed: 01/23/2024]
Abstract
The evolution of parasite resistance to antiparasitic agents has become a serious health issue indicating a critical and pressing need to develop new therapeutics that can conquer drug resistance. Nanoparticles are novel, promising emerging drug carriers that have demonstrated efficiency in treating many parasitic diseases. Lately, attention has been drawn to a broad-spectrum nanoparticle capable of converting absorbed light into heat via the photothermal effect phenomenon. The present study is the first to assess the effect of silver nanoparticles (Ag NPs) and iron oxide nanoparticles (Fe3O4 NPs) as sole agents and with the combined action of the light-emitting diode (LED) on Blastocystis hominins (B. hominis) in vitro. Initially, the aqueous synthesized nanoparticles were characterized by UV-Vis spectroscopy, zeta potential, and transmission electron microscopy (TEM). The anti-blastocyst efficiency of these NPs was tested separately in dark conditions. As these NPs have a wide absorption spectrum in the visible regions, they were also excited by a continuous wave LED of wavelength band (400-700 nm) to test the photothermal effect. The sensitivity of B. hominis cysts was evaluated using scanning laser confocal microscopy whereas the live and dead cells were accurately segmented based on superpixels and the k-mean clustering algorithm. Our findings showed that this excitation led to hyperthermia that induced a significant reduction in the number of cysts treated with photothermally active NPs. The results of this study elucidate the potential role of photothermally active NPs as an effective anti-blastocystis agent. By using this approach, new therapeutic antiparasitic agents can be developed.
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Affiliation(s)
- Shaimaa M I Alexeree
- Department of Laser Application in Metrology, Photochemistry, and Agricultural, National Institute of Laser Enhanced Science, Cairo University, Giza, Egypt.
| | - Hanan M Abou-Seri
- Department of Parasitology, Faculty of Medicine, Ain Shams University, Cairo, Egypt
| | - Hala E Shams El-Din
- Department of Parasitology, Faculty of Medicine, Ain Shams University, Cairo, Egypt
| | - Doaa Youssef
- Department of Engineering Applications of Lasers, National Institute of Laser Enhanced Science, Cairo University, Giza, Egypt
| | - Marwa A Ramadan
- Department of Laser Application in Metrology, Photochemistry, and Agricultural, National Institute of Laser Enhanced Science, Cairo University, Giza, Egypt
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Fantinatti M, Da-Cruz AM. Enterobius vermicularis in Brazil: An integrative review. Rev Soc Bras Med Trop 2023; 56:e00732023. [PMID: 37792827 PMCID: PMC10550099 DOI: 10.1590/0037-8682-0073-2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 08/03/2023] [Indexed: 10/06/2023] Open
Abstract
Enterobius vermicularis, an intestinal helminth, is transmitted through the ingestion of eggs found in food, water, dust, or other fomites, including infected individuals. This review aimed to examine the frequency and distribution of E. vermicularis infections in Brazil between 1991 and 2022. The conducted bibliographic survey revealed that the frequency of E. vermicularis infections in Brazil ranged from 0.1 to 26.1%, depending on factors such as population ethnicity, individual age group, geographic area, time frame, and diagnostic method. However, these findings were based on a limited number of publications, suggesting that the actual prevalence rates of E. vermicularis infection may still be unknown and potentially underestimated.
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Affiliation(s)
- Maria Fantinatti
- Universidade Federal de Roraima, Curso de Medicina, Boa Vista, RR, Brasil
- Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Laboratório Interdisciplinar de Pesquisas Médicas, Rio de Janeiro, RJ, Brasil
| | - Alda Maria Da-Cruz
- Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Laboratório Interdisciplinar de Pesquisas Médicas, Rio de Janeiro, RJ, Brasil
- Universidade do Estado do Rio de Janeiro, Faculdade de Ciências Médicas, Disciplina de Parasitologia, Rio de Janeiro, RJ, Brasil
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Soleimani Jevinani S, Mohammad Rahimi H, Asri N, Rostami-Nejad M, Ahmadipour S, Mirjalali H. Molecular epidemiology and subtyping of Blastocystis sp. and its subtypes in celiac patients; a case control study. Microb Pathog 2023; 179:106086. [PMID: 36963704 DOI: 10.1016/j.micpath.2023.106086] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Revised: 02/28/2023] [Accepted: 03/21/2023] [Indexed: 03/26/2023]
Abstract
Blastocystis sp. is a common intestinal protist, reported from symptomatic and asymptomatic subjects. Blastocystis sp. has been reported from a broad spectrum of gastrointestinal disorders. Celiac disease (CD) is an autoimmune disorder of the small intestine, which leads to the lack of tolerance against gluten. Long-term following of gluten-free diet in CD patients decreases the gut microbiota restoration and probably decreases the chance of Blastocystis sp. colonization. The current study aimed to investigate the prevalence of Blastocystis sp. and its subtypes in CD patients in comparison to healthy subjects. Stool samples were collected from 238 participants including 92 confirmed CD patients and 146 healthy subjects. upon DNA extraction, the presence of Blastocystis sp. was evaluated using amplification of discriminative regions of the small ribosomal RNA (ssu rRNA) gene. To characterize subtypes and alleles, amplified fragments were sequenced. Phylogenetic trees were constructed to visualize subtype correlation. Our findings showed that 21% (50) of samples including 16.3% (15/92) and 23.97% (35/146) were positive for Blastocystis sp. in CD patients and healthy controls, respectively. Except family relationship, other variables were not statistical correlated with the presence of Blastocystis sp.. Totally, 25 samples were successfully sequenced. Accordingly, ST1, ST2, and ST3 were present in 8 (32%), 9 (36%), and 8 (32%) of the samples, respectively. Allele discrimination showed that all ST1 were allele 4; alleles 11, 9, and 12 were retrieved from ST2, and alleles 34, 36, and 38 were observed in ST3. The relationship between colonization of Blastocystis sp. and alteration in the gut microbiota composition is indeterminate, however, this hypothesis that lower prevalence of Blastocystis sp. in CD patients who follow a gluten-free diet affect the colonization of Blastocystis sp. via alteration in the gut microbiota composition could be interesting for further investigations.
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Affiliation(s)
| | - Hanieh Mohammad Rahimi
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Nastaran Asri
- Basic and Molecular Epidemiology of Gastrointestinal Disorders Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Mohammad Rostami-Nejad
- Basic and Molecular Epidemiology of Gastrointestinal Disorders Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Shokoufeh Ahmadipour
- Department of Pediatric, Faculty of Medicine, Lorestan University of Medical Sciences, Khorramabad, Iran
| | - Hamed Mirjalali
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
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Meclat VYB, Ancheta KSB, Adao DEV, Rivera WL. Phylogenetic relationship of nonmammalian and avian Blastocystis isolates and conventional subtypes. J Parasit Dis 2023; 47:192-197. [PMID: 36910318 PMCID: PMC9998794 DOI: 10.1007/s12639-022-01554-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 11/21/2022] [Indexed: 11/29/2022] Open
Abstract
Blastocystis is an intestinal protist commonly identified in human and animal feces. At present, there are 28 proposed subtypes (STs) identified based on the small subunit rRNA gene, 13 of which are found in both humans and animals. In general, nonmammalian and avian groups are infected by the nonmammalian and avian subtypes (NMASTs). However, NMASTs were also isolated from mammalian hosts, suggesting possible cross-contamination and transmission from nonmammalian and avian hosts to other animals and, potentially, humans. Thus, this study determined the possible relationship between NMAST sequences and conventional STs to provide new insights into Blastocystis classification, identification, and epidemiological significance. Phylogenetic trees were constructed using three statistical models, namely, Maximum Likelihood, Neighbor Joining, and Maximum Parsimony, based on the 30 NMAST sequences. The NMAST sequences formed groups clustered closely with other NMAST subtrees. Most sequences of nonmammalian and avian isolates formed distinct monophyletic clades based on their NMAST classification, with some clustering with mammalian and avian STs. These results indicate the close relationship between Blastocystis isolated from mammalian and avian hosts and nonmammalian and avian hosts. Supplementary Information The online version contains supplementary material available at (10.1007/s12639-022-01554-7).
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Affiliation(s)
- Vanessa Yvonne B. Meclat
- Institute of Biology, College of Science, University of the Philippines Diliman, 1101 Quezon City, Philippines
| | - Keith Sigfred B. Ancheta
- Institute of Biology, College of Science, University of the Philippines Diliman, 1101 Quezon City, Philippines
| | - Davin Edric V. Adao
- Institute of Biology, College of Science, University of the Philippines Diliman, 1101 Quezon City, Philippines
| | - Windell L. Rivera
- Institute of Biology, College of Science, University of the Philippines Diliman, 1101 Quezon City, Philippines
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Distribution and Phylogenetic Analysis of Subtypes and Alleles of Blastocystis sp. in the Stool Samples Collected from Patients with Gastrointestinal Complaints in İzmir, Turkey. Acta Parasitol 2023:10.1007/s11686-023-00665-2. [PMID: 36806111 DOI: 10.1007/s11686-023-00665-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 01/19/2023] [Indexed: 02/23/2023]
Abstract
PURPOSE Blastocystis sp. is one of the most prevalent intestinal protozoa found in humans and many other animals. The present study aimed to examine the distribution and genetic diversity of Blastocystis sp. in stool samples from patients with gastrointestinal complaints in İzmir, Turkey. METHODS All stool samples of 439 patients with gastrointestinal complaints were examined by native-Lugol and trichrome staining. To investigate the presence of Blastocystis sp. in stool samples, DNA was isolated, and PCR was performed with the barcode region in the SSU rRNA gene. PCR positive samples were sequenced to identify subtypes and alleles of Blastocystis sp. RESULTS The prevalence of Blastocystis sp. was found to be 16.6% (73/439) in patients with gastrointestinal complaints in İzmir, Turkey. Three different Blastocystis sp. subtypes were identified. ST3 (28/55; 51.0%) was the most common subtype followed by ST2 (19/55; 34.5%) and ST1 (8/55; 14.5%). Itching and diarrhea were the most prominent clinical symptoms in Blastocystis sp. positive patients. When clinical symptoms and subtypes were compared, diarrhea was found in 62.5%, 47.4%, and 46.4% of patients with ST1, ST2, and ST3 subtypes, respectively. In addition, itching was found in 37.5%, 32.1%, and 21.1% of patients with ST1, ST3, and ST2, respectively. Six distinct alleles were identified by allele analysis of Blastocystis 18S rRNA gene: allele 4 for ST1, alleles 9, 11, and 12 for ST2, and alleles 34 and 36 for ST3. In this study, Blastocystis sp. was detected in 16 of 21 districts, including the central and rural districts of İzmir. Although ST1 was detected in central districts, it was not found in rural districts. CONCLUSION This study provides comprehensive data on the prevalence and molecular epidemiology of the genetic diversity at the level of subtypes and alleles of Blastocystis sp. in different districts of İzmir province in Turkey. To the best of our knowledge, this is the first study which evaluates the distribution of subtypes and alleles of Blastocystis sp. according to PCR and SSU rRNA gene sequencing in patients with gastrointestinal complaints in different districts of İzmir province in Turkey.
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Jiménez P, Muñoz M, Ramírez JD. An update on the distribution of Blastocystis subtypes in the Americas. Heliyon 2022; 8:e12592. [PMID: 36619449 PMCID: PMC9816782 DOI: 10.1016/j.heliyon.2022.e12592] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/07/2022] [Accepted: 12/05/2022] [Indexed: 12/25/2022] Open
Abstract
Blastocystis is an intestinal protist that presents worldwide distribution, colonizes animal and human hosts, and is classified into at least 34 ribosomal subtypes (STs). Herein, we conducted an update based on studies reporting Blastocystis-positive samples obtained from diverse hosts in the Americas. We described the distribution throughout the continent by assembling maps representing the distribution of STs and the most important 18S-rRNA alleles. Thirty-nine articles from the previous study, "A summary of Blastocystis subtypes in North and South America," and forty-one additional articles from March 2019 to March 2022 were considered. The most common subtype described was ST3, representing the highest percentage of positive samples. Other recently identified STs include ST12, ST13, and ST16 in humans, and ST10, ST14, and ST17 in animals. Novel subtypes have also been described in this continent. We assembled and updated the distribution of Blastocystis in the Americas. We hope this delivers new understandings and knowledge of this microorganism's prevalence and genetic diversity.
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Affiliation(s)
- Paula Jiménez
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
| | - Marina Muñoz
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
| | - Juan David Ramírez
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia,Molecular Microbiology Laboratory, Department of Pathology, Molecular and Cell-based Medicine, Icahn School of Medicine at Mount Sinai, New York City, NY, USA,Corresponding author.,
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9
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Nemati S, Falahati Anbaran M, Mohammad Rahimi H, Hosseini MS, Aghaei S, Khalili N, Mirjalali H, Zali MR. Evolutionary and phylogenetic analyses of the barcoding region suggest geographical relationships among Blastocystis sp., ST3 in humans. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2021; 96:105151. [PMID: 34801757 DOI: 10.1016/j.meegid.2021.105151] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 11/11/2021] [Accepted: 11/16/2021] [Indexed: 06/13/2023]
Abstract
Blastocystis sp., has 21 distinct subtypes of which ST3 thought to be the most prevalent subtype. This study aims to analyze the global variations of ST3. In total, 496 sequences with more than 400 nucleotides from Asia, Europe, Africa, and America were included in this study. Results show that allele 34 was the most prevalent allele in all continents. The lowest and highest allele diversity were observed in Europe and Africa, respectively. The nucleotide diversity ranged from 0.0077 in Europe to 0.02 in Africa, and haplotype diversity ranged from 0.461 in America to 0.6 in Africa. The haplotype network and Bayesian structure showed at least two major clusters including Asia and Europe-Africa-America. Tajima's D values for all continents were negative and statistically significant, indicating an excess of rare nucleotide variants. Similarly, the Fu's FS test showed negative values for all regions, indicating an excess of rare haplotypes. Pairwise FST exhibited a high genetic differentiation between Asia and other continents. Mismatch analysis for all populations showed a unimodal distribution. Our findings indicate that there are two probable major clusters of Blastocystis sp. ST3, a cluster which is shared between Europe, Africa, and America, and a cluster which is restricted to Asia.
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Affiliation(s)
- Sara Nemati
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Mohsen Falahati Anbaran
- School of Biology, University of Tehran, 14155-6455 Tehran, Iran; NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway
| | - Hanieh Mohammad Rahimi
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Monireh Sadat Hosseini
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Sara Aghaei
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Negar Khalili
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Hamed Mirjalali
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
| | - Mohammad Reza Zali
- Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
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10
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Higuera A, Herrera G, Jimenez P, García-Corredor D, Pulido-Medellín M, Bulla-Castañeda DM, Pinilla JC, Moreno-Pérez DA, Maloney JG, Santín M, Ramírez JD. Identification of Multiple Blastocystis Subtypes in Domestic Animals From Colombia Using Amplicon-Based Next Generation Sequencing. Front Vet Sci 2021; 8:732129. [PMID: 34504891 PMCID: PMC8421793 DOI: 10.3389/fvets.2021.732129] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Accepted: 07/22/2021] [Indexed: 12/18/2022] Open
Abstract
Blastocystis is frequently reported in fecal samples from animals and humans worldwide, and a variety of subtypes (STs) have been observed in wild and domestic animals. In Colombia, few studies have focused on the transmission dynamics and epidemiological importance of Blastocystis in animals. In this study, we characterized the frequency and subtypes of Blastocystis in fecal samples of domestic animals including pigs, minipigs, cows, dogs, horses, goats, sheep, and llama from three departments of Colombia. Of the 118 fecal samples included in this study 81.4% (n = 96) were positive for Blastocystis using a PCR that amplifies a fragment of the small subunit ribosomal RNA (SSU rRNA) gene. PCR positive samples were sequenced by next generation amplicon sequencing (NGS) to determine subtypes. Eleven subtypes were detected, ten previously reported, ST5 (50.7%), ST10 (47.8%), ST25 (34.3%), ST26 (29.8%), ST21 (22.4%), ST23 (22.4%), ST1 (17.9%), ST14 (16.4%), ST24 (14.9%), ST3 (7.5%), and a novel subtype, named ST32 (3.0%). Mixed infection and/or intra -subtype variations were identified in most of the samples. Novel ST32 was observed in two samples from a goat and a cow. To support novel subtype designation, a MinION based sequencing strategy was used to generate the full-length of the SSU rRNA gene. Comparison of full-length nucleotide sequences with those from current valid subtypes supported the designation of ST32. This is the first study in Colombia using NGS to molecularly characterize subtypes of Blastocystis in farm animals. A great diversity of subtypes was observed in domestic animals including subtypes previously identified in humans. Additionally, subtype overlap between the different hosts examined in this study were observed. These findings highlight the presence of Blastocystis subtypes with zoonotic potential in farm animals indicating that farm animals could play a role in transmission to humans.
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Affiliation(s)
- Adriana Higuera
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
| | - Giovanny Herrera
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
| | - Paula Jimenez
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
| | - Diego García-Corredor
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
| | - Martin Pulido-Medellín
- Grupo de Investigación en Medicina Veterinaria y Zootecnia, Facultad de Ciencias Agropecuarias, Universidad Pedagógica y Tecnológica de Colombia, Bogotá, Colombia
| | - Diana M Bulla-Castañeda
- Grupo de Investigación en Medicina Veterinaria y Zootecnia, Facultad de Ciencias Agropecuarias, Universidad Pedagógica y Tecnológica de Colombia, Bogotá, Colombia
| | - Juan Carlos Pinilla
- Grupo de Investigación en Ciencias Agropecuarias, Facultad de Ciencias Exactas, Naturales y Agropecuarias, Universidad de Santander, Bucaramanga, Colombia
| | | | - Jenny G Maloney
- Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center (BARC), United States Department of Agriculture (USDA-ARS), Beltsville, MD, United States
| | - Mónica Santín
- Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center (BARC), United States Department of Agriculture (USDA-ARS), Beltsville, MD, United States
| | - Juan David Ramírez
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
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11
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Cabrine-Santos M, Moura RGF, Pedrosa AL, Correia D, Oliveira-Silva MBD. Molecular characterization of Blastocystis subtypes isolated in the city of Uberaba, Minas Gerais State, Brazil. Rev Soc Bras Med Trop 2021; 54:e03052021. [PMID: 34431950 PMCID: PMC8405216 DOI: 10.1590/0037-8682-0305-2021] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 07/09/2021] [Indexed: 11/26/2022] Open
Abstract
INTRODUCTION Blastocystis is an intestinal protozoan that may play a role in the pathogenicity of humans. This study aimed to (i) genetically characterize Blastocystis isolates obtained from human fecal samples and the water supply of the city of Uberaba, Minas Gerais, Brazil, and (ii) to verify the phylogenetic relationship between these isolates. METHODS Blastocystis species present in 26 fecal samples obtained from humans and animals from Uberaba were genetically characterized by polymerase chain reaction-restriction fragment length polymorphism and polymerase chain reaction-sequence-tagged sites. All amplicons were partially sequenced and/or defined according to the GenBank classification. RESULTS Polymerase chain reaction amplicons were generated from 21 human isolates and 18 water samples. The subtypes defined were ST1 (53.3%), ST3 (40.0%), and ST2 (6.7%) for human isolates; ST10 (100%) for bovine isolates; and ST5 (50.0%), ST1 (25%), and ST3 (25%) for pigs. Sequencing of polymerase chain reaction products showed a 98%-99% identity for the Blastocystis sequences deposited in GenBank, except for sequences from water samples that showed the identity of algae sequences. Phylogenetic analysis of Blastocystis sequences showed two distinct groups, one of which was principally formed by ST1, ST5, and ST10, and the other by isolates characterized as ST3 and ST7. Both clades showed human and animal sequences, reinforcing the notion that Blastocystis subtypes are not host-specific. CONCLUSIONS The data showed that Blastocystis subtypes circulating in Uberaba are ST1-ST3, ST5, and ST10, present in both humans and animals, demonstrating that the Blastocystis subtypes are not host-specific; that is, zoonotic transmission is possible.
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Affiliation(s)
- Marlene Cabrine-Santos
- Universidade Federal do Triângulo Mineiro, Instituto de Ciências da Saúde, Departamento de Biomedicina, Uberaba, MG, Brasil
| | - Renata Gregório Franco Moura
- Universidade Federal do Triângulo Mineiro, Programa de Pós-graduação em Medicina Tropical e Infectologia, Uberaba, MG, Brasil
| | - André Luiz Pedrosa
- Universidade Federal do Triângulo Mineiro, Instituto de Ciências Biológicas e Naturais, Departamento de Bioquímica, Farmacologia e Fisiologia, Uberaba, MG, Brasil
| | - Dalmo Correia
- Universidade Federal do Triângulo Mineiro, Instituto de Ciências da Saúde, Departamento de Clínica Médica, Uberaba, MG, Brasil
| | - Márcia Benedita de Oliveira-Silva
- Universidade Federal do Triângulo Mineiro, Instituto de Ciências Biológicas e Naturais, Departamento de Microbiologia, Parasitologia e Imunologia, Uberaba, MG, Brasil
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12
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Dos Santos Zanetti A, Malheiros AF, de Matos TA, Dos Santos C, Battaglini PF, Moreira LM, Lemos LMS, Castrillon SKI, da Costa Boamorte Cortela D, Ignotti E, Espinosa OA. Diversity, geographical distribution, and prevalence of Entamoeba spp. in Brazil: a systematic review and meta-analysis. ACTA ACUST UNITED AC 2021; 28:17. [PMID: 33812449 PMCID: PMC8019558 DOI: 10.1051/parasite/2021028] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Accepted: 03/11/2021] [Indexed: 11/29/2022]
Abstract
The genus Entamoeba includes a variety of widely distributed species adapted to live in the digestive tracts of humans and a large variety of animals of different classes. The objective of this study was to investigate the prevalence, distribution, and molecular epidemiology of Entamoeba spp. in different classes of hosts in Brazil. Studies that analyzed hosts from several classes, including humans and domestic, wild, or captive animals, were considered. The pooled prevalence of Entamoeba spp. was calculated using the random-effects model. A total of 166 studies on humans and 16 on animals were included. The prevalence of Entamoeba spp. in the Brazilian population was 22% (95% CI: 21–24). The state with the highest prevalence was Paraiba with 72%, followed by Federal District with 53%, and Rondonia with 50%. In immunocompromized patients, the prevalence was 18%, and cancer (36%) was the most prevalent cause of immunosuppression. The prevalence of Entamoeba spp. in animal hosts was 12% (95% CI: 7–17). Captive wild animals and domestic farm animals showed the highest prevalence, with 16% and 15%, respectively. The species found more often were E. coli (86.5%), E. dispar (7.9%), and E. histolytica (3.1%). In conclusion, a high prevalence (22%) of Entamoeba spp. was found in the Brazilian population, with a prevalence of up to 50% mainly in the northern, northeastern, and central-western regions. The pathogenic species E. histolytica is distributed in most Brazilian regions, with significant prevalence percentages. Among animals, unidentified Entamoeba species were most prevalent in mammals.
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Affiliation(s)
- Andernice Dos Santos Zanetti
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Antonio Francisco Malheiros
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Tatiane Amorim de Matos
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Carolina Dos Santos
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Paula Franciene Battaglini
- Residency in Infectious Diseases, Júlio Miller University Hospital, Federal University of Mato Grosso, Luis Philippe Pereira Leite St., Alvorada, Cuiabá, 78048-902 Mato Grosso, Brazil
| | - Luciana Melhorança Moreira
- Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, 78217-042 Caceres, Mato Grosso, Brazil
| | - Larissa Maria Scalon Lemos
- Department of Nursing, Faculty of Health Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Solange Kimie Ikeda Castrillon
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Denise da Costa Boamorte Cortela
- Department of Medicine, Faculty of Health Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, 78217-042 Caceres, Mato Grosso, Brazil
| | - Eliane Ignotti
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Tancredo Neves Ave., 1095 - Cavalhada II, Caceres, 78217-042 Mato Grosso, Brazil
| | - Omar Ariel Espinosa
- Faculty Estacio of Pantanal (Estacio FAPAN), São Luís, 2522 St - Cidade Nova, Caceres, 78201-000 Mato Grosso, Brazil
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13
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de Melo GB, Bosqui LR, da Costa IN, de Paula FM, Gryschek RCB. Current status of research regarding Blastocystis sp., an enigmatic protist, in Brazil. Clinics (Sao Paulo) 2021; 76:e2489. [PMID: 34231705 PMCID: PMC8240786 DOI: 10.6061/clinics/2021/e2489] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 05/31/2021] [Indexed: 02/05/2023] Open
Abstract
The present study aimed to evaluate the occurrence of Blastocystis sp. in Brazilian studies over a period of years (2000-2020), as well as point out relevant aspects of this enigmatic organism. We performed a literature search using six sources of international databases. The data were divided into diagnostic by parasitological and molecular techniques, and relevant aspects. After applying the inclusion and exclusion criteria, 52 studies were included in the final analysis. The occurrence of Blastocystis sp. in Brazil ranged from 0.5% to 86.6%, as determined using parasitological techniques. The highest occurrence was in the North (27.3%) and the lowest, in the Midwest region (13.4%). In Brazil, most studies have employed molecular techniques and are concentrated in the Southeast region. The Blastocystis sp. subtype ST3 had the highest average positivity, followed by ST1 and ST2. These findings represent a panorama that reflects the reality of Brazil; thus, we believe that the effectiveness of parasitological diagnosis should be considered with regard to making an appropriate choice of technique for detecting Blastocystis sp. Additionally, we emphasize the importance of further studies in the context of molecular epidemiology with regard to this genus. Blastocystis sp. is not well understood yet, and very little information regarding this genus is available; hence, further research regarding this genus is urgently needed.
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Affiliation(s)
- Gessica Baptista de Melo
- Laboratorio de Investigacao Medica (LIM06-Laboratorio de Imunopatologia da Esquistossome), Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, SP, BR
- Secao de Helmintologia, Instituto de Medicina Tropical (IMT), Faculdade de Medicina FMUSP, Universidade de Sao Paulo, Sao Paulo, SP, BR
| | - Larissa Rodrigues Bosqui
- Laboratorio de Imunoparasitologia das Doencas Negligenciadas e Cancer, Universidade Estadual de Londrina (UEL), Londrina, PR, BR
| | - Idessania Nazareth da Costa
- Laboratorio de Imunoparasitologia das Doencas Negligenciadas e Cancer, Universidade Estadual de Londrina (UEL), Londrina, PR, BR
| | - Fabiana Martins de Paula
- Laboratorio de Investigacao Medica (LIM06-Laboratorio de Imunopatologia da Esquistossome), Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, SP, BR
- Secao de Helmintologia, Instituto de Medicina Tropical (IMT), Faculdade de Medicina FMUSP, Universidade de Sao Paulo, Sao Paulo, SP, BR
- Corresponding author. E-mail:
| | - Ronaldo Cesar Borges Gryschek
- Laboratorio de Investigacao Medica (LIM06-Laboratorio de Imunopatologia da Esquistossome), Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, SP, BR
- Secao de Helmintologia, Instituto de Medicina Tropical (IMT), Faculdade de Medicina FMUSP, Universidade de Sao Paulo, Sao Paulo, SP, BR
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14
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Pérez MR, Yáñez CM, Hernández AM, Sustaita JJD, Jiménez EG, Andrade MR, Vargas GGG, Gómez JOG. Blastocystis infection frequency and subtype distribution in university students. Heliyon 2020; 6:e05729. [PMID: 33385079 PMCID: PMC7770537 DOI: 10.1016/j.heliyon.2020.e05729] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 08/26/2020] [Accepted: 12/11/2020] [Indexed: 12/21/2022] Open
Abstract
Blastocystis is a parasite commonly found in the gut of humans and animals; there are 22 known subtypes (STs). STs 1-9 and 12 have been found in humans. This parasite has a faecal-oral route of transmission; its high infection prevalence in developing countries is due to poor hygiene practices, exposure to infected animals, and intake of contaminated water or food. Its pathogenicity has not been established, because it has been found in symptomatic and asymptomatic patients. The goal of this study was to analyze the frequency of Blastocystis and its subtypes (1, 2, 3, 4, 5, and 7), and assess the relationship between these subtypes and abdominal pain and distension. 202 university students participated in this study. A questionnaire was applied to assess the gastrointestinal symptoms, and subsequently the students were asked to provide faecal samples. The presence of parasites was determined by optical microscopy. Blastocystis-positive samples had their DNA extracted and end-point PCR was performed to corroborate the presence of Blastocystis and determine its subtypes. Among the samples, 47.03% were positive according to PCR analysis. The most prevalent subtypes were ST3 (29.79%), ST4 (16.84%), and ST1 (14.89%). We found a relationship between ST1 and abdominal pain (OR = 0.196; CI = 0.0533-0.7318; p = 0.015), and between ST4 and abdominal distension (OR = 0.2928; CI = 0.1017-0.8429; p = 0.023). However, the presence of this parasite and the probable relationship with gastrointestinal symptoms suggest the need to determine its role within intestinal microbiota in order to confirm whether its eradication is really necessary or not.
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Affiliation(s)
- Marcela Ramírez Pérez
- Facultad de Ciencias de la Salud, UJED, Calz. Palmas 1, Revolución, 35050 Gómez Palacio, Durango, Mexico
| | - Claudia Muñoz Yáñez
- Facultad de Ciencias de la Salud, UJED, Calz. Palmas 1, Revolución, 35050 Gómez Palacio, Durango, Mexico
| | - Alejandra Méndez Hernández
- Facultad de Ciencias de la Salud, UJED, Calz. Palmas 1, Revolución, 35050 Gómez Palacio, Durango, Mexico
| | | | - Efraín Gaytan Jiménez
- Facultad de Ciencias de la Salud, UJED, Calz. Palmas 1, Revolución, 35050 Gómez Palacio, Durango, Mexico
| | - Marisela Rubio Andrade
- Facultad de Ciencias de la Salud, UJED, Calz. Palmas 1, Revolución, 35050 Gómez Palacio, Durango, Mexico
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15
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Lhotská Z, Jirků M, Hložková O, Brožová K, Jirsová D, Stensvold CR, Kolísko M, Jirků Pomajbíková K. A Study on the Prevalence and Subtype Diversity of the Intestinal Protist Blastocystis sp. in a Gut-Healthy Human Population in the Czech Republic. Front Cell Infect Microbiol 2020; 10:544335. [PMID: 33123491 PMCID: PMC7573152 DOI: 10.3389/fcimb.2020.544335] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 09/10/2020] [Indexed: 12/14/2022] Open
Abstract
Blastocystis sp. is a common intestinal protist colonizing the human intestine the prevalence of which varies across non-industrialized and industrialized countries. Its role in the human gut ecosystem remains unclear due to persisting gaps in knowledge of epidemiology and factors affecting gut colonization. Here, we aimed to expand the knowledge of the epidemiology of Blastocystis sp. in the gut-healthy humans in one of the industrialized European countries, including the distribution of its subtypes, the correlation between its occurrence and several factors such as lifestyle, contact with animals, age, and sex. A total of 288 stool samples were obtained from asymptomatic individuals over the entire age-range and 136 samples from animals with which the volunteers were in frequent contact. All samples were examined in parallel by PCR and xenic in vitro culture. Blastocystis sp. was detected in samples from both human and non-human hosts. In humans, the overall prevalence was 24% and eight subtypes were found; in animals, the prevalence was 10%, and only five subtypes were detected. A higher incidence of Blastocystis sp. was observed in individuals (i) traveling outside Europe, (ii) in frequent contact with livestock, and (iii) over 50 years of age. We found no effect on gender on Blastocystis sp. colonization. Summary This study provides data on the prevalence and diversity of the gut protist Blastocystis sp. and its subtypes in a gut-healthy human population with emphasis on several factors such as contact with animals, lifestyle, age, and gender.
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Affiliation(s)
- Zuzana Lhotská
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia.,Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Milan Jirků
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia
| | - Oldřiška Hložková
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia
| | - Kristýna Brožová
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia.,Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Dagmar Jirsová
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia
| | | | - Martin Kolísko
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia.,Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Kateřina Jirků Pomajbíková
- Biology Center, Institute of Parasitology, The Czech Academy of Sciences, České Budějovice, Czechia.,Faculty of Science, University of South Bohemia, České Budějovice, Czechia
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16
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Melo GBD, Roldan W, Malta FDM, Lescano SAZ, Castilho VL, Gonçalves EMDN, Paula FMD, Gryschek RCB. Culture isolation and molecular identification of Blastocystis sp. in Brazilian human isolates: preliminary results. Rev Inst Med Trop Sao Paulo 2020; 62:e51. [PMID: 32667389 PMCID: PMC7359720 DOI: 10.1590/s1678-9946202062051] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 07/01/2020] [Indexed: 12/19/2022] Open
Abstract
Blastocystis sp. is a protist commonly found in stool samples of humans and animals. Biological and genetic factors of this organism remain controversial. The present study aimed to develop and implement the Blastocystis in vitro culture of Brazilian human isolates for routine use. The fecal isolates (n = 20) were maintained in our laboratory by several passages in Pavlova's medium. Cultures were monitored every 72 h by light microscopy. Genomic DNA was extracted to identify the subtypes (STs). In most isolates, the vacuolar form was prevalent. The amoeboid, granular and cystic forms were observed during in vitro cultivation. STs 1, 2, 3, 4 and 7 were identified. Our preliminary results show the generation time and forms present in the in vitro culture of Blastocystis subtypes isolated from Brazilian human isolates. Therefore, we emphasize the use of in vitro culture as a tool in future studies for the better understanding of the biological aspects of Blastocystis sp.
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Affiliation(s)
- Gessica Baptista de Melo
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - William Roldan
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Fernanda de Mello Malta
- Laboratório de Gastroenterologia e Hepatologia Tropical (LIM-07), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Susana Angelica Zevallos Lescano
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Vera Lúcia Castilho
- Seção de Parasitologia, Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | | | - Fabiana Martins de Paula
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Ronaldo Cesar Borges Gryschek
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, São Paulo, Brazil
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Peña S, Carrasco G, Rojas P, Castillo D, Ozaki LS, Mercado R. Determination of subtypes of Blastocystis sp. in Chilean patients with and without inflammatory bowel syndrome, A preliminary report. Parasite Epidemiol Control 2020; 8:e00125. [PMID: 31890923 PMCID: PMC6926359 DOI: 10.1016/j.parepi.2019.e00125] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 11/04/2019] [Accepted: 11/11/2019] [Indexed: 12/19/2022] Open
Abstract
BACKGROUND & METHODS Blastocystis sp. is one of the most prevalent unicellular eukaryote of the human large intestine in Chile and worldwide. It is classified in subtypes (STs), where using the polymorphic sequences of its 18S rRNA genes currently recognizes 22. STs 1-9 and ST12 have been reported in humans. It has been hypothesized that different STs of Blastocystis sp. differentially affect the clinical severity of the digestive disease in Irritable Bowel Syndrome (IBS) patients, but more studies ar4e needed to establish this statement. To contribute in the elucidation of the potential relationship between Blastocystis sp. subtypes and IBS severity, 37 IBS patient fecal samples were collected at hospitals in Santiago (Chile) and were screened for the presence of vacuolated forms of Blastocystis sp. by using conventional microscopy. Positive samples were submitted to PCR and sequencing for determining STs. The same procedure was performed in fecal samples from five non-IBS Blastocystis sp. carriers for preliminary comparative purpose. RESULTS AND DISCUSSION Four out of the 37 samples from the IBS patients were found positive for Blastocystis sp. (10.81%) by using microscopy. The presence of this microorganism in these four samples were confirmed by PCR and sequencing. Subtypes and their respective closest match alleles were searched and the ST1, ST2 and ST4 subtypes were found in these patients. ST4 subtype is scarcely detected in South America countries, being reported previously only in Colombia and Brazil. In this ST4 subtype we determined the allele 42 which is the most frequent allele observed in human Blastocystis isolates. In the non-IBS individuals' carriers, three subtypes were found: ST1, ST2 and ST3, even belonging to the same family group. Closest match alleles: 2, 12 and 34 here detected were also commonly reported globally. Instead of the small number of IBS patients studied here, the frequency of blastocystosis detected (10.81%) was lower than the prevalence of Blastocystis sp. infections described for the Chilean general population (30.4%). In Chile, clear correlation of Blastocystis sp. subtypes and IBS severity is still lacking with this study but it may lead and contribute to a better understanding of its pathogenicity and worldwide epidemiology.
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Affiliation(s)
- Sebastián Peña
- Parasitology Unit, Faculty of Medicine, Universidad de Chile, Santiago, Chile
| | - Gabriela Carrasco
- Department of Nutrition, Faculty of Medicine, Universidad de Chile, Santiago, Chile
| | - Pamela Rojas
- Department of Nutrition, Faculty of Medicine, Universidad de Chile, Santiago, Chile
| | - Douglas Castillo
- Parasitology Laboratory, Faculty of Medicine, Universidad de Chile, Santiago, Chile
| | - Luiz S. Ozaki
- Centre for Biological Data Sciences, Life Sciences, Department of Immunology and Microbiology, Virginia Commonwealth University, Richmond, VA, United States of America
| | - Rubén Mercado
- Parasitology Unit, Faculty of Medicine, Universidad de Chile, Santiago, Chile
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18
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Zanetti ADS, Malheiros AF, de Matos TA, Longhi FG, Moreira LM, Silva SL, Castrillon SKI, Ferreira SMB, Ignotti E, Espinosa OA. Prevalence of Blastocystis sp. infection in several hosts in Brazil: a systematic review and meta-analysis. Parasit Vectors 2020; 13:30. [PMID: 31937366 PMCID: PMC6961275 DOI: 10.1186/s13071-020-3900-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 01/08/2020] [Indexed: 12/20/2022] Open
Abstract
BACKGROUND Blastocystis sp. affects a wide variety of animals and is the most common protozoan in human fecal samples with potential pandemic distribution. In the present study, a systematic review and meta-analysis were conducted to determine the prevalence and distribution of Blastocystis sp. in different classes of hosts in Brazil. METHODS Studies that analyzed hosts of various classes, including humans, domestic animals, wild animals or captive animals, were considered. The pooled prevalence of Blastocystis sp. infection was estimated by random effects models. RESULTS For humans, similar prevalence rates were found for males (31.0%, 95% CI: 17.0-45.0%; weight 10%) and females (28.0%, 95% CI: 16.0-41.0%; weight 10%); the state of Mato Grosso do Sul showed the highest prevalence, with 41.0% positivity (95% CI: 36.0-46.0%; weight 2.9%). The prevalence among immunocompromised patients was 5.0% (95% CI: 3.0-7.0%; weight 10%), and the most common cause of immunosuppression was hemodialysis, with 23.0% (95% CI: 17.0-29.0%; weight 12.4%). Among classifications according to interaction with humans, wild and domestic animals presented values of 19.0% (95% CI: 7.0-31.0%; weight 42.6%) and 17.0% (95% CI: 13.0-21.0%; weight 29.6%), respectively. Among these animals, mammals (39.0%, 95% CI: 21.0-56.0%; weight 47.3%) and birds (18.0%, 95% CI: 10.0-27.0%; weight 39.3%) exhibited the highest prevalence. Phylogenetic analysis of Blastocystis sp. revealed greater genetic diversity for clades of subtypes (STs) ST1, ST2 and ST3. CONCLUSIONS The overall prevalence of Blastocystis sp. in the Brazilian human population was 24%, which reflects the reality in the South, Southeast and Midwest regions, where prevalence rates of up to 40% were found. Among animals, mammals and birds exhibited the highest prevalence.
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Affiliation(s)
- Andernice Dos Santos Zanetti
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Antonio Francisco Malheiros
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Tatiane Amorim de Matos
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Fabiana Gulin Longhi
- The Brazilian Centre for Evidence-based Healthcare: A Joanna Briggs Institute Centre of Excellence, São Paulo, São Paulo, Brazil
| | - Luciana Melhorança Moreira
- Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Samuel Laudelino Silva
- Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Solange Kimie Ikeda Castrillon
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Silvana Margarida Benevides Ferreira
- The Brazilian Centre for Evidence-based Healthcare: A Joanna Briggs Institute Centre of Excellence, São Paulo, São Paulo, Brazil.,Post-Graduation Program in Nursing, Federal University of Mato Grosso (UFMT), Cuiabá, Mato Grosso, Brazil
| | - Eliane Ignotti
- Post-Graduation Program in Environmental Science, Faculty of Agricultural and Biological Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil.,Department of Nursing, Faculty of Health Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil
| | - Omar Ariel Espinosa
- Department of Medicine, Faculty of Health Sciences, State University of Mato Grosso (UNEMAT), Cáceres, Mato Grosso, Brazil.
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19
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Melo GBD, Malta FDM, Maruta CW, Criado PR, Castilho VLP, Gonçalves EMDN, Espirito-Santo MCDCD, Paula FMD, Gryschek RCB. Characterization of subtypes of Blastocystis sp. isolated from patients with urticaria, São Paulo, Brazil. Parasite Epidemiol Control 2019; 7:e00124. [PMID: 31872093 PMCID: PMC6911935 DOI: 10.1016/j.parepi.2019.e00124] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Revised: 10/18/2019] [Accepted: 11/05/2019] [Indexed: 01/01/2023] Open
Abstract
Blastocystis sp. is described as an enteric protist prevalent in fecal samples from humans and animals; its pathogenicity and epidemiology are still controversial. Currently, it has been associated with intestinal diseases such as irritable bowel syndrome and clinical manifestations of allergic skin, such as chronic urticaria. In the context of urticaria, it is still uncertain whether this organism is directly related to the allergic manifestation or just a common component of the intestinal microbiota. This study aimed to evaluate the occurrence and molecular diversity of Blastocystis sp. in individuals with urticaria from a dermatology outpatient clinic, São Paulo, Brazil. Fecal samples of 58 patients with urticaria were examined using parasitological methods; and subsequently tested by polymerase chain reaction using Blastocystis-specific primers. The subtypes (STs) and alleles (a) were determined using BLASTn and MLST tools. ST1, ST2, ST3, ST4, ST6 and mixed infection (ST1 + ST3) were identified in the patients with urticaria; ST1 (a4), ST3 (a34 and a36) and ST4 (a42) were the most prevalent. Our molecular analyses allowed an initial description of Blastocystis subtypes in patients with urticaria from São Paulo city, Brazil.
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Affiliation(s)
- Gessica Baptista de Melo
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
- Corresponding author.
| | - Fernanda de Mello Malta
- Laboratório de Gastroenterologia e Hepatologia Tropical (LIM-07), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
| | - Celina Wakisaka Maruta
- Departamento de Dermatologia, Hospital Das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
| | - Paulo Ricardo Criado
- Departamento de Dermatologia, Hospital Das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
- Faculdade de Medicina Do ABC, São Paulo, Brazil
| | - Vera Lucia Pagliusi Castilho
- Seção de Parasitologia, Divisão Do Laboratório Central, Hospital Das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
| | | | | | - Fabiana Martins de Paula
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
| | - Ronaldo Cesar Borges Gryschek
- Laboratório de Imunopatologia da Esquistossomose (LIM-06), Instituto de Medicina Tropical de São Paulo, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil
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20
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Oliveira-Arbex AP, David ÉB, Tenório MDS, Cicchi PJP, Patti M, Coradi ST, Lucheis SB, Jim J, Guimarães S. Diversity of Blastocystis subtypes in wild mammals from a zoo and two conservation units in southeastern Brazil. INFECTION GENETICS AND EVOLUTION 2019; 78:104053. [PMID: 31683006 DOI: 10.1016/j.meegid.2019.104053] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 09/23/2019] [Accepted: 09/26/2019] [Indexed: 10/25/2022]
Abstract
The enteric protist Blastocystis is one of the most commonly parasite reported in humans and a variety of animal hosts worldwide. Regarding genetic diversity, at least 17 subtypes (STs) have been identified in mammals and birds, with eight of them (ST1-8) infecting both humans and animals. Recently, isolates from wild mammalian species have been genetically characterized, however data is still scarce, mainly in Latin America. Here, we aimed to verify the occurrence and genetic diversity of Blastocystis in captive wild mammals kept in one zoo and in two units of protection and conservation in southeastern Brazil. A total of 78 fecal samples (14 pooled and 64 individual samples) were recovered from 102 wild mammals of 35 species included in the following orders: Primates, Carnivora, Artiodactyla, Pilosa, Rodentia and Marsupialia. Zoo and units staff were invited to participated but only 16 fecal samples could be screened. Based on the sequence analyses of SSUrDNA gene, out of 29 PCR products from animal samples, 51.7% (15/29) were successfully sequenced and five Blastocystis subtypes were identified as follows: ST1 (2/15; 13.3%), ST2 (2/15; 13.3%), ST3 (4/15; 26.6%), ST5 (2/15; 13.3%) and ST8 (5/14; 33.3%). Only four isolates from humans were sequenced and identified as ST1 (2 isolates), ST2 and ST3. It was observed that Blastocystis infecting non-human primates belong to ST1 and ST2 and mainly to ST3 and ST8, artiodactyls ST5, carnivores ST1 and ST5 and rodents ST1. In addition, this present study reports some interesting findings: (1) 63% (12/19) of Blastocystis isolates from animals and employees belonged to the potentially zoonotic subtypes ST1-ST3; (2) most of these isolates displayed high identity with publicly available DNA sequences from non-human primates and humans, including primate handlers; (3) Blastocystis ST5 was found infecting the northern tiger cat, a native South American felid and one of the species facing a high risk of extinction in Brazil.
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Affiliation(s)
- Ana Paula Oliveira-Arbex
- Department of Parasitology, Institute of Bioscience, São Paulo State University (UNESP), Botucatu, SP, Brazil; Integrated Faculties of Bauru (FIB), Bauru, SP, Brazil
| | - Érica Boarato David
- Department of Parasitology, Institute of Bioscience, São Paulo State University (UNESP), Botucatu, SP, Brazil; Sagrado Coração University (USC), Department of Health Sciences, Bauru, SP, Brazil
| | - Michely da Silva Tenório
- Tropical Diseases Postgraduate Program, Medical School, São Paulo State University (UNESP), Botucatu, SP, Brazil
| | - Paulo José Pyles Cicchi
- Department of Zoology, Institute of Bioscience, São Paulo State University (UNESP), Botucatu, SP, Brazil
| | - Mariella Patti
- Sagrado Coração University (USC), Department of Health Sciences, Bauru, SP, Brazil
| | | | | | - Jorge Jim
- Department of Zoology, Institute of Bioscience, São Paulo State University (UNESP), Botucatu, SP, Brazil
| | - Semíramis Guimarães
- Department of Parasitology, Institute of Bioscience, São Paulo State University (UNESP), Botucatu, SP, Brazil.
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21
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Oishi CY, Klisiowicz DDR, Seguí R, Köster PC, Carmena D, Toledo R, Esteban JG, Muñoz-Antoli C. Reduced prevalence of soil-transmitted helminths and high frequency of protozoan infections in the surrounding urban area of Curitiba, Paraná, Brazil. Parasite Epidemiol Control 2019; 7:e00115. [PMID: 31660444 PMCID: PMC6807289 DOI: 10.1016/j.parepi.2019.e00115] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 05/14/2019] [Accepted: 06/17/2019] [Indexed: 12/20/2022] Open
Abstract
Human populations living in the surrounding urban areas of large Brazilian cities have increased vulnerability to intestinal parasites. However, the epidemiological scenario of soil-transmitted helminths (STH) in Curitiba, Paraná's main city, remains largely unknown. To bridge this gap of knowledge, this study aims to determine the prevalence of intestinal parasites and to investigate potential transmission pathways of the most prevalent species detected. We conducted a cross-sectional epidemiological study between July and September 2014 among schoolchildren in urban and peri-urban (deprived) areas of the municipality of Campo do Tenente, Curitiba. A total of 549 stool samples were used for coproparasitological diagnosis. Microscopy-positive samples of the most common species found were re-assessed by PCR and sequencing methods at the small subunit rRNA gene. Prevalence of infection by any given enteroparasite was 24.8%, but soil-transmitted helminths were only detected in 3.5% of the examined samples. Frequency of protozoan infections reached 90% and 97.8% in single and multiple infections, respectively. Blastocystis sp. (38.9%) was the most frequently species found in the surveyed schoolchildren population. A total of 41 Blastocystis-positive samples were unambiguously typed as ST1 (36.4%), ST2 (21.2%), ST3 (39.4%), and ST1 + ST3 mixed infection (3.0%). These results indicate that Blastocystis transmission is primarily anthroponotic in origin. This data highlights the importance of maintaining the anthelminthic control programs currently in place and of improving sanitary disposal of human excreta in poor-resource settings.
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Affiliation(s)
- Camila Yumi Oishi
- Post-Graduate Program in Microbiology and Pathology, Department of Basic Pathology, Biological Sciences Area, Paraná Federal University, Curitiba, Brazil
| | - Débora do Rocio Klisiowicz
- Post-Graduate Program in Microbiology and Pathology, Department of Basic Pathology, Biological Sciences Area, Paraná Federal University, Curitiba, Brazil
| | - Raimundo Seguí
- Departamento Farmacia y Tecnología Farmacéutica y Parasitología, Área Parasitología, Facultat Farmàcia, Universitat València, Spain
| | - Pamela C Köster
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Majadahonda, Madrid, Spain
| | - David Carmena
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Majadahonda, Madrid, Spain
| | - Rafael Toledo
- Departamento Farmacia y Tecnología Farmacéutica y Parasitología, Área Parasitología, Facultat Farmàcia, Universitat València, Spain
| | - José Guillermo Esteban
- Departamento Farmacia y Tecnología Farmacéutica y Parasitología, Área Parasitología, Facultat Farmàcia, Universitat València, Spain
| | - Carla Muñoz-Antoli
- Departamento Farmacia y Tecnología Farmacéutica y Parasitología, Área Parasitología, Facultat Farmàcia, Universitat València, Spain
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22
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Jiménez PA, Jaimes JE, Ramírez JD. A summary of Blastocystis subtypes in North and South America. Parasit Vectors 2019; 12:376. [PMID: 31358042 PMCID: PMC6664531 DOI: 10.1186/s13071-019-3641-2] [Citation(s) in RCA: 88] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Accepted: 07/25/2019] [Indexed: 03/13/2023] Open
Abstract
Background Blastocystis is a stramenopile of worldwide significance due to its capacity to colonize several hosts. Based on its high level of genetic diversity, Blastocystis is classified into global ribosomal subtypes (STs). The aim of this study was to conduct a summary of Blastocystis STs and depict their distribution throughout North and South America; we did this by assembling maps and identifying its most common 18S alleles based on diverse studies that had been reported all over the continent and whose Blastocystis-positive samples were obtained from numerous hosts. Results Thirty-nine articles relating to nine countries from the American continent were considered, revealing that ST1 (33.3%), ST2 (21.9%), ST3 (37.9%), ST4 (1.7%), ST5 (0.4%), ST6 (1.2%), ST7 (1%), ST8 (0.7%), ST9 (0.4%), ST12 (0.3%), Novel ST (1.1%) and Mixed STs (0.2%) occurred in humans. The STs in other animal hosts were ST1 (6.5%), ST2 (6.5%), ST3 (4.7%), ST4 (7.2%), ST5 (15.9%), ST6 (17.3%), ST7 (3.6%), ST8 (20.6%), ST10 (9%), ST14 (3.6%), ST17 (1.1%) and Novel ST (4%). The countries that presented the most abundant variety of studies reporting STs were the USA with 14 STs, Brazil with 9 STs and Colombia with 8 STs. Additionally, new variants had been described in the last few years, which have increased the prevalence of these subtypes in the countries studied, such as Novel ST (1.1%) and Mixed STs (0.2%) in humans and Novel ST (4%) in animals. Conclusions This summary updates the epidemiological situation on the distribution of Blastocystis STs in North and South America and will augment current knowledge on the prevalence and genetic diversity of this protozoan. Electronic supplementary material The online version of this article (10.1186/s13071-019-3641-2) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Paula Andrea Jiménez
- Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales y Matemáticas, Universidad del Rosario, Bogotá, Colombia.,Escuela de Medicina y Ciencias de la Salud, Universidad del Rosario, Bogotá, Colombia
| | - Jesús Eduardo Jaimes
- Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales y Matemáticas, Universidad del Rosario, Bogotá, Colombia
| | - Juan David Ramírez
- Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales y Matemáticas, Universidad del Rosario, Bogotá, Colombia.
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23
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Lokmer A, Cian A, Froment A, Gantois N, Viscogliosi E, Chabé M, Ségurel L. Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels. PLoS One 2019; 14:e0211139. [PMID: 30726303 PMCID: PMC6364966 DOI: 10.1371/journal.pone.0211139] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 01/08/2019] [Indexed: 11/19/2022] Open
Abstract
Protozoa have long been considered undesirable residents of the human gut, but recent findings suggest that some of them may positively affect the gut ecosystem. To better understand the role and ecological dynamics of these commensal and potentially beneficial protozoan symbionts, we need efficient methods to detect them, as well as accurate estimates of their prevalence across human populations. Metagenomics provides such an opportunity, allowing simultaneous detection of multiple symbionts in a single analytical procedure. In this study, we collected fecal samples of 68 individuals from three Cameroonian populations with different subsistence modes and compared metagenomics-based and targeted methods of detection for two common protozoan genera: Blastocystis and Entamoeba. In addition, we analyzed our data along with publicly available fecal metagenomes from various worldwide populations to explore the prevalence and association patterns of ten protozoan genera. Regarding the detection method, microscopy was much less sensitive than metagenomics for Entamoeba, whereas qPCR was at least as sensitive as metagenomics for Blastocystis sp. However, metagenomics was more likely to detect co-colonizations by multiple subtypes. Out of the ten examined genera in 127 individuals from Cameroon, Tanzania, Peru, Italy or USA, only three (Blastocystis, Entamoeba and Enteromonas) had an overall prevalence exceeding 10%. All three genera were more common in less industrialized populations and their prevalence differed between continents and subsistence modes, albeit not in a straightforward manner. The majority (72.5%) of colonized individuals carried at least two protozoan species, indicating that mixed-species colonizations are common. In addition, we detected only positive and no negative association patterns between different protozoa. Despite the pitfalls of the metagenomic approach, ranging from the availability of good-quality sequencing data to the lack of standard analytical procedures, we demonstrated its utility in simultaneous detection of multiple protozoan genera, and especially its ability to efficiently detect mixed-species colonizations. Our study corroborates and expands prevalence results previously obtained for Blastocystis sp. and provides novel data for Entamoeba spp. and several other protozoan genera. Furthermore, it indicates that multiple protozoa are common residents of the healthy human gut worldwide.
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Affiliation(s)
- Ana Lokmer
- UMR7206 Eco-anthropologie et Ethnobiologie, CNRS—MNHN—Univ Paris Diderot—Sorbonne Paris Cité, Paris, France
| | - Amandine Cian
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 –UMR 8204 –CIIL–Centre d’Infection et d’Immunité de Lille, Lille, France
| | - Alain Froment
- UMR7206 Eco-anthropologie et Ethnobiologie, CNRS—MNHN—Univ Paris Diderot—Sorbonne Paris Cité, Paris, France
| | - Nausicaa Gantois
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 –UMR 8204 –CIIL–Centre d’Infection et d’Immunité de Lille, Lille, France
| | - Eric Viscogliosi
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 –UMR 8204 –CIIL–Centre d’Infection et d’Immunité de Lille, Lille, France
| | - Magali Chabé
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 –UMR 8204 –CIIL–Centre d’Infection et d’Immunité de Lille, Lille, France
| | - Laure Ségurel
- UMR7206 Eco-anthropologie et Ethnobiologie, CNRS—MNHN—Univ Paris Diderot—Sorbonne Paris Cité, Paris, France
- * E-mail:
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24
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Valença-Barbosa C, do Bomfim TCB, Teixeira BR, Gentile R, Neto SFDC, Magalhães BSN, Balthazar DDA, da Silva FA, Biot R, d’Avila Levy CM, Santos HLC. Molecular epidemiology of Blastocystis isolated from animals in the state of Rio de Janeiro, Brazil. PLoS One 2019; 14:e0210740. [PMID: 30682075 PMCID: PMC6347289 DOI: 10.1371/journal.pone.0210740] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 12/31/2018] [Indexed: 01/25/2023] Open
Abstract
The enteric protist Blastocystis is one of the most frequently reported parasites infecting both humans and many other animal hosts worldwide. A remarkable genetic diversity has been observed in the species, with 17 different subtypes (STs) on a molecular phylogeny based on small subunit RNA genes (SSU rDNA). Nonetheless, information regarding its distribution, diversity and zoonotic potential remains still scarce, especially in groups other than primates. In Brazil, only a few surveys limited to human isolates have so far been conducted on Blastocystis STs. The aim of this study is to determine the occurrence of Blastocystis subtypes in non-human vertebrate and invertebrate animal groups in different areas of the state of Rio de Janeiro, Brazil. A total of 334 stool samples were collected from animals representing 28 different genera. Blastocystis cultivated samples were subtyped using nuclear small subunit ribosomal DNA (SSU rDNA) sequencing. Phylogenetic analyses and BLAST searches revealed six subtypes: ST5 (28.8%), ST2 (21.1%), ST1 and ST8 (19.2%), ST3 (7.7%) and ST4 (3.8%). Our findings indicate a considerable overlap between STs in humans and other animals. This highlights the importance of investigating a range of hosts for Blastocystis to understand the eco-epidemiological aspects of the parasite and its host specificity.
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Affiliation(s)
- Carolina Valença-Barbosa
- Laboratório de Estudos Integrados em Protozoologia, Instituto Oswaldo Cruz/FIOCRUZ, Rio de Janeiro, RJ, Brazil
| | | | - Bernardo Rodrigues Teixeira
- Laboratório de Biologia e Parasitologia de Mamíferos Silvestres Reservatórios, Instituto Oswaldo Cruz/FIOCRUZ, Rio de Janeiro, RJ, Brazil
| | - Rosana Gentile
- Laboratório de Biologia e Parasitologia de Mamíferos Silvestres Reservatórios, Instituto Oswaldo Cruz/FIOCRUZ, Rio de Janeiro, RJ, Brazil
| | - Sócrates Fraga da Costa Neto
- Laboratório de Biologia e Parasitologia de Mamíferos Silvestres Reservatórios, Instituto Oswaldo Cruz/FIOCRUZ, Rio de Janeiro, RJ, Brazil
| | | | - Daniel de Almeida Balthazar
- Fundação Jardim Zoológico da cidade do Rio de Janeiro, Parque da Quinta da Boa Vista, Rio de Janeiro, Brazil
| | | | - Renata Biot
- Laboratório de Parasitologia do Departamento de Patologia do Hospital Universitário Antônio Pedro/Universidade Federal Fluminense, Niterói, Rio de Janeiro, Brazil
| | - Claudia Masini d’Avila Levy
- Laboratório de Estudos Integrados em Protozoologia, Instituto Oswaldo Cruz/FIOCRUZ, Rio de Janeiro, RJ, Brazil
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Alarcon-Valdes P, Villalobos G, Martinez-Flores WA, Lopez-Escamilla E, Gonzalez-Arenas NR, Romero-Valdovinos M, Martinez-Hernandez F, Santillan-Benitez JG, Maravilla P. Can the pyruvate: ferredoxin oxidoreductase (PFOR) gene be used as an additional marker to discriminate among Blastocystis strains or subtypes? Parasit Vectors 2018; 11:564. [PMID: 30373630 PMCID: PMC6205798 DOI: 10.1186/s13071-018-3141-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 10/10/2018] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND Blastocystis spp. are the most prevalent intestinal eukaryotes identified in humans, with at least 17 genetic subtypes (ST) based on genes coding for the small-subunit ribosomal RNA (18S). It has been argued that the 18S gene should not be the marker of choice to discriminate between STs of these strains because this marker exhibits high intra-genomic polymorphism. By contrast, pyruvate:ferredoxin oxidoreductase (PFOR) is a relevant enzyme involved in the core energy metabolism of many anaerobic microorganisms such as Blastocystis, which, in other protozoa, shows more polymorphisms than the 18S gene and thus may offer finer discrimination when trying to identify Blastocystis ST. Therefore, the objective of the present study was to assess the suitability of the PFOR gene as an additional marker to discriminate among Blastocystis strains or subtypes from symptomatic carrier children. METHODS Faecal samples from 192 children with gastrointestinal symptoms from the State of Mexico were submitted for coprological study. Twenty-one of these samples were positive only for Blastocystis spp.; these samples were analysed by PCR sequencing of regions of the 18S and PFOR genes. The amplicons were purified and sequenced; afterwards, both markers were assessed for genetic diversity. RESULTS The 18S analysis showed the following frequencies of Blastocystis subtypes: ST3 = 43%; ST1 = 38%; ST2 = 14%; and ST7 = 5%. Additionally, using subtype-specific primer sets, two samples showed mixed Blastocystis ST1 and ST2 infection. For PFOR, Bayesian inference revealed the presence of three clades (I-III); two of them grouped different ST samples, and one grouped six samples of ST3 (III). Nucleotide diversity (π) and haplotype polymorphism (θ) for the 18S analysis were similar for ST1 and ST2 (π = ~0.025 and θ = ~0.036); remarkably, ST3 showed almost 10-fold lower values. For PFOR, a similar trend was found: clade I and II had π = ~0.05 and θ = ~0.05, whereas for clade III, the values were almost 6-fold lower. CONCLUSIONS Although the fragment of the PFOR gene analysed in the present study did not allow discrimination between Blastocystis STs, this marker grouped the samples in three clades with strengthened support, suggesting that PFOR may be under different selective pressures and evolutionary histories than the 18S gene. Interestingly, the ST3 sequences showed lower variability with probable purifying selection in both markers, meaning that evolutionary forces drive differential processes among Blastocystis STs.
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Affiliation(s)
- Patricia Alarcon-Valdes
- Facultad de Quimica, Universidad Autonoma del Estado de Mexico (UAEMex), Paseo Colon esq. Paseo Tollocan, Toluca, Estado de Mexico, Mexico
| | - Guiehdani Villalobos
- Instituto de Ecologia, Universidad Nacional Autonoma de Mexico (UNAM), 04510, Ciudad de Mexico, Ciudad de Mexico, Mexico
| | | | - Eduardo Lopez-Escamilla
- Hospital General "Dr. Manuel Gea Gonzalez", Calzada de Tlalpan 4800, Ciudad de Mexico, 14080, Ciudad de Mexico, Mexico
| | - Nelly Raquel Gonzalez-Arenas
- Hospital General "Dr. Manuel Gea Gonzalez", Calzada de Tlalpan 4800, Ciudad de Mexico, 14080, Ciudad de Mexico, Mexico
| | - Mirza Romero-Valdovinos
- Hospital General "Dr. Manuel Gea Gonzalez", Calzada de Tlalpan 4800, Ciudad de Mexico, 14080, Ciudad de Mexico, Mexico
| | - Fernando Martinez-Hernandez
- Hospital General "Dr. Manuel Gea Gonzalez", Calzada de Tlalpan 4800, Ciudad de Mexico, 14080, Ciudad de Mexico, Mexico.
| | | | - Pablo Maravilla
- Hospital General "Dr. Manuel Gea Gonzalez", Calzada de Tlalpan 4800, Ciudad de Mexico, 14080, Ciudad de Mexico, Mexico.
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Is the genetic variability of Cathepsin B important in the pathogenesis of Blastocystis spp.? Parasitol Res 2018; 117:3935-3943. [PMID: 30298236 DOI: 10.1007/s00436-018-6103-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 09/30/2018] [Indexed: 01/22/2023]
Abstract
The potential role of Blastocystis as a pathogen is controversial because it is found in both symptomatic and asymptomatic carriers. Since Cathepsin B has been identified as a main virulence factor that contributes to the pathogenesis of this parasite, the purpose of this study was to analyze the genetic polymorphisms of cathepsin B from Blastocystis from patients with irritable bowel syndrome and from asymptomatic carriers. DNA from fecal samples of both groups, which were previously genotyped by 18S sequencing, was used to amplify a fragment of the cathepsin B gene. Phylogenetic reconstructions were performed and some genetic population indexes were obtained. Amplicons of 27 samples (15 cases, 10 controls, and two commercial ATCC strains) were obtained and analyzed. Phylogenetic reconstructions using nucleotides or inferred amino acid sequences did not separate between cases or controls or among subtypes. Regarding the values of genetic variability, we found that the haplotype and nucleotide diversity indexes of cathepsin B from cases and controls were similar to the values of 18S from controls. By contrast, 18S from cases showed low variability, suggesting that the genetic variability of cathepsin B was not related to the symptomatology of Blastocystis carriers. However, since no polymorphisms related to cases or controls were found, it is logical to assume that the potential damage caused by Blastocystis in situ may be due to unclear mechanisms of Cathepsin B regulation and expression that should be studied in future studies.
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27
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Seguí R, Muñoz-Antoli C, Klisiowicz DR, Oishi CY, Köster PC, de Lucio A, Hernández-de-Mingo M, Puente P, Toledo R, Esteban JG, Carmena D. Prevalence of intestinal parasites, with emphasis on the molecular epidemiology of Giardia duodenalis and Blastocystis sp., in the Paranaguá Bay, Brazil: a community survey. Parasit Vectors 2018; 11:490. [PMID: 30165880 PMCID: PMC6117969 DOI: 10.1186/s13071-018-3054-7] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 08/10/2018] [Indexed: 12/22/2022] Open
Abstract
Background Intestinal protozoan parasites are major contributors to the global burden of gastrointestinal disease causing significant socioeconomic consequences. Children living in resource-poor settings with restricted access to water and sanitary services are particularly at risk of these infections. Methods A prospective, community-based, cross-sectional survey was conducted in Paraná (southern Brazil) between May 2015 and May 2016. A total of 766 stool samples were individually collected from volunteers (male/female ratio: 0.99; age range: 0–76 years) and used for investigating the presence of intestinal helminth and protozoan species by routine microscopic procedures including the Kato-Katz and modified Ritchie concentration methods and the Ziehl-Neelsen stain technique. Quantitative real-time PCR confirmed microscopy-positive samples for Giardia duodenalis and the assemblages and sub-assemblages determined by multilocus sequence-based genotyping of the glutamate dehydrogenase (gdh) and β-giardin (bg) genes of the parasite. Identification of Blastocystis subtypes was carried out by amplification and sequencing of a partial fragment of the small-subunit ribosomal RNA gene (SSU rDNA) of this heterokont microorganism. Results Overall, 46.1% (353/766) of the participants were infected/colonised by at least one intestinal parasite/commensal species. Protozoan and helminth species were detected in 42.7% and 10.1% of the surveyed population, respectively. Blastocystis sp. (28.2%), Endolimax nana (14.9%), and Giardia duodenalis (11.0%) were the most prevalent species found among protozoans and Ascaris lumbricoides (5.0%), Trichuris trichiura (4.6%) and hookworms (1.0%) among helminths. A total of 38 G. duodenalis-positive samples were genotyped at gdh and bg markers, revealing the presence of the sub-assemblages AII (47.4%), AII/AIII (2.6%), BIII (5.3%), BIV (26.3%) and BIII/BIV (13.1%). Two samples (5.3%) were only identified as assemblage B. AII was predominantly found in females aged 5–9 years and was associated with a higher likelihood of reporting gastrointestinal symptoms. A total of 102 Blastocystis-positive samples were successfully subtyped at the SSU rRNA gene revealing the presence of ST1 (36.3%), ST2 (15.7%), ST3 (41.2%), ST4 (2.9%), ST6 (1.0%) and ST8 (2.9%). Conclusions Data presented here indicate that enteric parasites still represent a pressing health concern in Paraná, Brazil, probably due to sub-optimal water, sanitation and hygiene conditions. A mostly anthroponotic origin is suspected for G. duodenalis and Blastocystis sp. infections. Electronic supplementary material The online version of this article (10.1186/s13071-018-3054-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Raimundo Seguí
- Department of Pharmacy, Pharmaceutical Technology and Parasitology, Parasitology Area, Faculty of Pharmacy, Valencia University, Avda. Vicent Andrés Estellés s/n, 46100, Burjassot, Valencia, Spain
| | - Carla Muñoz-Antoli
- Department of Pharmacy, Pharmaceutical Technology and Parasitology, Parasitology Area, Faculty of Pharmacy, Valencia University, Avda. Vicent Andrés Estellés s/n, 46100, Burjassot, Valencia, Spain.
| | - Debora R Klisiowicz
- Department of Basic Pathology, Biological Sciences Area, Paraná Federal University, Av. Cel. Francisco H. dos Santos 100, Curitiba, 19031, Brazil
| | - Camila Y Oishi
- Department of Basic Pathology, Biological Sciences Area, Paraná Federal University, Av. Cel. Francisco H. dos Santos 100, Curitiba, 19031, Brazil
| | - Pamela C Köster
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Ctra. Majadahonda-Pozuelo Km 2, 28220 Majadahonda, Madrid, Spain
| | - Aida de Lucio
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Ctra. Majadahonda-Pozuelo Km 2, 28220 Majadahonda, Madrid, Spain
| | - Marta Hernández-de-Mingo
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Ctra. Majadahonda-Pozuelo Km 2, 28220 Majadahonda, Madrid, Spain
| | - Paula Puente
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Ctra. Majadahonda-Pozuelo Km 2, 28220 Majadahonda, Madrid, Spain
| | - Rafael Toledo
- Department of Pharmacy, Pharmaceutical Technology and Parasitology, Parasitology Area, Faculty of Pharmacy, Valencia University, Avda. Vicent Andrés Estellés s/n, 46100, Burjassot, Valencia, Spain
| | - José G Esteban
- Department of Pharmacy, Pharmaceutical Technology and Parasitology, Parasitology Area, Faculty of Pharmacy, Valencia University, Avda. Vicent Andrés Estellés s/n, 46100, Burjassot, Valencia, Spain
| | - David Carmena
- Parasitology Reference and Research Laboratory, National Centre for Microbiology, Ctra. Majadahonda-Pozuelo Km 2, 28220 Majadahonda, Madrid, Spain.
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Rojas-Velázquez L, Morán P, Serrano-Vázquez A, Fernández LD, Pérez-Juárez H, Poot-Hernández AC, Portillo T, González E, Hernández E, Partida-Rodríguez O, Nieves-Ramírez ME, Magaña U, Torres J, Eguiarte LE, Piñero D, Ximénez C. Genetic Diversity and Distribution of Blastocystis Subtype 3 in Human Populations, with Special Reference to a Rural Population in Central Mexico. BIOMED RESEARCH INTERNATIONAL 2018; 2018:3916263. [PMID: 29744356 PMCID: PMC5878905 DOI: 10.1155/2018/3916263] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Accepted: 02/11/2018] [Indexed: 02/01/2023]
Abstract
Blastocystis subtype 3 (ST3) is a parasitic protist found in the digestive tract of symptomatic and asymptomatic humans around the world. While this parasite exhibits a high prevalence in the human population, its true geographic distribution and global genetic diversity are still unknown. This gap in knowledge limits the understanding of the spread mechanisms, epidemiology, and impact that this parasite has on human populations. Herein, we provided new data on the geographical distribution and genetic diversity of Blastocystis ST3 from a rural human population in Mexico. To do so, we collected and targeted the SSU-rDNA region in fecal samples from this population and further compared its genetic diversity and structure with that previously observed in populations of Blastocystis ST3 from other regions of the planet. Our analyses reveled that diversity of Blastocystis ST3 showed a high haplotype diversity and genetic structure to the world level; however, they were low in the Morelos population. The haplotype network revealed a common widespread haplotype from which the others were generated recently. Finally, our results suggested a recent expansion of the diversity of Blastocystis ST3 worldwide.
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Affiliation(s)
- Liliana Rojas-Velázquez
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
- Unidad de Posgrado, Universidad Nacional Autónoma de México (UNAM), Circuito de Posgrado S/N, Coyoacán, Cd. Universitaria, 04510 Ciudad de México, Mexico
| | - Patricia Morán
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
| | - Angélica Serrano-Vázquez
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
| | - Leonardo D. Fernández
- Centro de Investigación en Recursos Naturales y Sustentabilidad (CIRENYS), Universidad Bernardo O'Higgins, Avenida Viel 1497, Santiago, Chile
| | - Horacio Pérez-Juárez
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
- Unidad de Posgrado, Universidad Nacional Autónoma de México (UNAM), Circuito de Posgrado S/N, Coyoacán, Cd. Universitaria, 04510 Ciudad de México, Mexico
| | - Augusto C. Poot-Hernández
- Departamento de Ingeniería de Sistemas Computacionales y Automatización, Sección de Ingeniería de Sistemas Computacionales, Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, Universidad Nacional Autónoma de México (UNAM), Circuito Escolar 3000, Cd. Universitaria, Coyoacán, 04510 Ciudad de México, Mexico
| | - Tobías Portillo
- Unidad de Bioinformática, Bioestadística y Biología Computacional, Red de Apoyo a la Investigación, Coordinación de la Investigación Científica, UNAM, Instituto Nacional de Ciencias Médicas y Nutrición, Vasco de Quiroga 15, Tlalpan, 14080 Ciudad de México, Mexico
| | - Enrique González
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
| | - Eric Hernández
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
| | - Oswaldo Partida-Rodríguez
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
| | - Miriam E. Nieves-Ramírez
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
| | - Ulises Magaña
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
- Unidad de Posgrado, Universidad Nacional Autónoma de México (UNAM), Circuito de Posgrado S/N, Coyoacán, Cd. Universitaria, 04510 Ciudad de México, Mexico
| | - Javier Torres
- Unidad de Investigación Médica en Enfermedades Infecciosas y Parasitarias, Hospital de Pediatría, Centro Médico Siglo XXI, Instituto Mexicano del Seguro Social (IMSS), Avenida Cuauhtémoc 330, Doctores, Cuauhtémoc, 06720 Ciudad de México, Mexico
| | - Luis E. Eguiarte
- Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México (UNAM), Circuito Exterior S/N, Junto al Jardín Botánico, Cd. Universitaria, Coyoacán, 04510 Ciudad de México, Mexico
| | - Daniel Piñero
- Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México (UNAM), Circuito Exterior S/N, Junto al Jardín Botánico, Cd. Universitaria, Coyoacán, 04510 Ciudad de México, Mexico
| | - Cecilia Ximénez
- Unidad de Investigación en Medicina Experimental, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Dr. Balmis 148, Doctores, Cuauhtémoc, 06726 Ciudad de México, Mexico
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