Comparative genomics reveals a widespread distribution of an exopolysaccharide biosynthesis gene cluster among Vibrionaceae

A new perspective of sediment layering scour and migration under the coupled effects of particle distribution and bio-viscosity-cavitation erosion

The scouring and migration of sediments in sewer systems are the key contributors to overflow pollution. Both physical and biological factors affect the erosion and migration of layered sediments. However, the functional characteristics of these factors and their quantification process still need to be further explored. In this study, the physical form and biological metabolism of the sediment are coupled, and the suspension mechanism under the dual action is proposed systematically and deeply. The influence coefficient of scour initiation was redefined as A^/prime, where the physical factors were particle size and mass, and the biological factors were bio-viscosity and internal cavitation. The bio-viscosity of layered sediment particles is provided by Extracellular Polymeric Substances (EPS). The slope value of |ΔD/-Δf| (ΔD: Dissipation; Δf: frequency) of surface EPS decreased from 0.489 to 0.315 when Quartz Crystal Microbalance with Dissipation (QCM-D) was used to analyse EPS viscosity, indicating that biological activities formed a dense biofilm on the sediment surface and enhanced the bond between particles. Meanwhile, by monitoring the accumulation density of sediments at different depths, it was found that the packing density of the bottom layer decreased from 1.50 to 1.45 g/cm3, which was mainly due to the internal cavitation caused by microorganism consuming organic matrix and releasing H2S and CH4. The delamination difference of EPS results in the uneven change of adhesion between different layers. This, combined with the internal erosion characteristics triggered by microbial stratified metabolism, collectively constitutes the biological effects on the sediment structure. Finally, the coupling mechanism of particle distribution and bio-viscous-cavitation erosion was formed, and the correctness of the formula was verified by repeated experiments, which proved the agreement between the theory and the practice and provided a scientific method for systematically analysing the erosion and migration law of sediment in the sewer system.

Investigation of exopolysaccharide formation and its impact on anaerobic succinate production with Vibrio natriegens

Vibrio natriegens is an emerging host for biotechnology due to its high growth and substrate consumption rates. In industrial processes typically fed-batch processes are applied to obtain high space-time yields. In this study, we established an aerobic glucose-limited fed-batch fermentation with the wild type (wt) of V. natriegens which yielded biomass concentrations of up to 28.4 gX  L-1 . However, we observed that the viscosity of the culture broth increased by a factor of 800 at the end of the cultivation due to the formation of 157 ± 20 mg exopolysaccharides (EPS) L-1 . Analysis of the genomic repertoire revealed several genes and gene clusters associated with EPS formation. Deletion of the transcriptional regulator cpsR in V. natriegens wt did not reduce EPS formation, however, it resulted in a constantly low viscosity of the culture broth and altered the carbohydrate content of the EPS. A mutant lacking the cps cluster secreted two-fold less EPS compared to the wt accompanied by an overall low viscosity and a changed EPS composition. When we cultivated the succinate producer V. natriegens Δlldh Δdldh Δpfl Δald Δdns::pycCg (Succ1) under anaerobic conditions on glucose, we also observed an increased viscosity at the end of the cultivation. Deletion of cpsR and the cps cluster in V. natriegens Succ1 reduced the viscosity five- to six-fold which remained at the same level observed at the start of the cultivation. V. natriegens Succ1 ΔcpsR and V. natriegens Succ1 Δcps achieved final succinate concentrations of 51 and 46 g L-1 with a volumetric productivity of 8.5 and 7.7 gSuc L-1  h-1 , respectively. Both strains showed a product yield of about 1.4 molSuc molGlc -1 , which is 27% higher compared with that of V. natriegens Succ1 and corresponds to 81% of the theoretical maximum.

Effect of a Stannous Fluoride Dentifrice on Biofilm Composition, Gene Expression and Biomechanical Properties

An in situ study was conducted to examine the mode of action of a 0.454% stannous fluoride (SnF₂)-containing dentifrice in controlling the composition and properties of oral biofilm. Thirteen generally healthy individuals participated in the study. Each participant wore an intra-oral appliance over a 48-h period to measure differences in the resulting biofilm’s architecture, mechanical properties, and bacterial composition after using two different toothpaste products. In addition, metatranscriptomics analysis of supragingival plaque was conducted to identify the gene pathways influenced. The thickness and volume of the microcolonies formed when brushing with the SnF₂ dentifrice were dramatically reduced compared to the control 0.76% sodium monofluorophosphate (MFP)-containing toothpaste. Similarly, the biophysical and nanomechanical properties measured by atomic force microscopy (AFM) demonstrated a significant reduction in biofilm adhesive properties. Metatranscriptomic analysis identified pathways associated with biofilm formation, cell adhesion, quorum sensing, and N-glycosylation that are significantly downregulated with SnF₂. This study provides a clinically relevant snapshot of how the use of a stabilized, SnF₂ toothpaste formulation can change the spatial organization, nanomechanical, and gene expression properties of bacterial communities.