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Wei X, Li W, Song Z, Wang S, Geng S, Jiang H, Wang Z, Tian P, Wu Z, Yang M. Straw Incorporation with Exogenous Degrading Bacteria (ZJW-6): An Integrated Greener Approach to Enhance Straw Degradation and Improve Rice Growth. Int J Mol Sci 2024; 25:7835. [PMID: 39063077 PMCID: PMC11276935 DOI: 10.3390/ijms25147835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 07/08/2024] [Accepted: 07/10/2024] [Indexed: 07/28/2024] Open
Abstract
Rice straw is an agricultural waste, the disposal of which through open burning is an emerging challenge for ecology. Green manufacturing using straw returning provides a more avant-garde technique that is not only an effective management measure to improve soil fertility in agricultural ecosystems but also nurtures environmental stewardship by reducing waste and the carbon footprint. However, fresh straw that is returned to the field cannot be quickly decomposed, and screening microorganisms with the capacity to degrade straw and understanding their mechanism of action is an efficient approach to solve such problems. This study aimed to reveal the potential mechanism of influence exerted by exogenous degradative bacteria (ZJW-6) on the degradation of straw, growth of plants, and soil bacterial community during the process of returning rice straw to the soil. The inoculation with ZJW-6 enhanced the driving force of cellulose degradation. The acceleration of the rate of decomposition of straw releases nutrients that are easily absorbed by rice (Oryza sativa L.), providing favorable conditions for its growth and promoting its growth and development; prolongs the photosynthetic functioning period of leaves; and lays the material foundation for high yields of rice. ZJW-6 not only directly participates in cellulose degradation as degrading bacteria but also induces positive interactions between bacteria and fungi and enriches the microbial taxa that were related to straw degradation, enhancing the rate of rice straw degradation. Taken together, ZJW-6 has important biological potential and should be further studied, which will provide new insights and strategies for the appropriate treatment of rice straw. In the future, this degrading bacteria may provide a better opportunity to manage straw in an ecofriendly manner.
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Affiliation(s)
- Xiaoshuang Wei
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Wanchun Li
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Ze Song
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Shiwen Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Shujuan Geng
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Hao Jiang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Zhenhui Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Ping Tian
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
| | - Zhihai Wu
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130118, China; (X.W.); (W.L.); (Z.S.); (S.W.); (S.G.); (H.J.); (Z.W.); (P.T.)
- National Crop Variety Approval and Characterization Station, Jilin Agricultural University, Changchun 130118, China
| | - Meiying Yang
- College of Life Sciences, Jilin Agricultural University, Changchun 130118, China
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Huang Y, Yan Y, Ma Y, Zhang X, Zhao Q, Men M, Huang Y, Peng Z. The effect of low-temperature straw-degrading microbes on winter wheat growth and soil improvement under straw return. Front Microbiol 2024; 15:1391632. [PMID: 39056007 PMCID: PMC11269160 DOI: 10.3389/fmicb.2024.1391632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 06/25/2024] [Indexed: 07/28/2024] Open
Abstract
The application of straw-degrading microbes (SDMs) with straw returned to the field is an effective measure to improve soil quality, increase yield, and maintain soil microorganisms. However, the utilization of SDMs in winter in north China is limited by the poor effects at low temperatures. This study investigated the effects of a new compound SDM, including a novel low-temperature fungus Pseudogymnoascus sp. SDF-LT, on winter wheat yield, soil improvement, and soil microbial diversity. A 2-year field experiment was conducted in two different soil textures of wheat-maize rotation fields with full corn straw return and application of SDMs at an amount of 67.5 kg hm-2. After 2 years of continuous application of SDMs, the winter wheat yield increased significantly, reaching 9419.40 kg hm-2 in Ningjin (NJSDM) and 9107.25 kg hm-2 in Mancheng (MCSDM). The soil properties have been significantly improved compared with the single straw return group, especially the sandy loam soil, whose quality is relatively low. The analysis of soil microbial diversity showed that SDMs significantly reduced the Chao1, Shannon, Simpson, and observed species of the sandy loam soil in the MCSDM group. The Simpson and Shannon indexes of fungi diversity in the two experimental sites were significantly increased by SDMs. The negative correlation of fungi increased from 47.1 to 48.85% in the SDM groups. The soil-dominant microbes changed in the SDM groups, in which the interactions between microbes were enhanced. These results suggested that the SDMs changed the the soil microbial community structure and its diversity and complexity, which is beneficial for crop growth. Our study provided sufficient evidence for the utilization of low-temperature SDMs with straw return in cold winter, which plays a role in soil improvement, especially for low-quality soils, to increase crop yield.
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Affiliation(s)
- Yuanyuan Huang
- Key Laboratory of Farmland Eco-Environment of Hebei/ College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, China
- State Key Laboratory of North China for Crop Improvement and Regulation/North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Hebei Agricultural University, Baoding, China
- Biology Institute, Hebei Academy of Sciences, Shijiazhuang, China
| | - Yuanyuan Yan
- State Key Laboratory of North China for Crop Improvement and Regulation/North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Hebei Agricultural University, Baoding, China
- Laboratory of Crop Germplasm Resources of Hebei Province/ College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Yang Ma
- Key Laboratory of Farmland Eco-Environment of Hebei/ College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, China
- State Key Laboratory of North China for Crop Improvement and Regulation/North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Hebei Agricultural University, Baoding, China
| | - Xiang Zhang
- Biology Institute, Hebei Academy of Sciences, Shijiazhuang, China
| | - Qian Zhao
- Biology Institute, Hebei Academy of Sciences, Shijiazhuang, China
| | - Mingxin Men
- School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, China
| | - Yali Huang
- School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang, China
| | - Zhengping Peng
- Key Laboratory of Farmland Eco-Environment of Hebei/ College of Resources and Environmental Sciences, Hebei Agricultural University, Baoding, China
- State Key Laboratory of North China for Crop Improvement and Regulation/North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Hebei Agricultural University, Baoding, China
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Roy D, Gunri SK, Pal KK. Isolation, screening and characterization of efficient cellulose-degrading fungal and bacterial strains and preparation of their consortium under in vitro studies. 3 Biotech 2024; 14:131. [PMID: 38645793 PMCID: PMC11031519 DOI: 10.1007/s13205-024-03974-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 03/04/2024] [Indexed: 04/23/2024] Open
Abstract
In this investigation, cellulose-degrading fungi and bacteria were isolated from different partially decomposed cellulose-rich substrates, such as groundnut residues, rice straw, and rotten wood, following dilution plating techniques on carboxymethyl cellulose agar media and screening for potential cellulose degradation ability. The development of a clear halo zone surrounding the microbial colonies during the initial screening process using the Congo red test (20 isolates) suggested cellulose hydrolysis, and the highest cellulase production activity was implied by the isolates with the largest clear zone ratio (9 isolates). Using both macroscopic and microscopic examinations, as well as standard biochemical tests outlined in Bergey's Manual of Determinative Bacteriology, the genus-level identification of fungi and bacteria was accomplished. In order to molecularly identify the 4 isolated fungal and bacterial strains at the species level after being ultimately selected for cellulase production potential under in vitro studies, fungal and bacterial DNA was extracted and amplified by PCR using the universal primers ITS1 and ITS4 for fungi (ITS rRNA, 5.8S rRNA) and 8F and 1492R for bacterial isolates (16S rRNA). After sequencing, the PCR results were compared to other comparable sequences in GenBank (NCBI). Based on the available NCBI data, phylogenetic analysis of their ribosomal gene partial sequences revealed that DAJ2 (PP086700) shares 100% homology with Aspergillus foetidus, DTJ4 (PP086699) shares 99.74% similarity with Trichoderma atrobrunnium, DBJ6 (PP082584) shares 100% identity with Priestia megaterium, and DMB9 (PP082585) shares 99.88% homology with Micrococcus yunnanensis. The cellulolytic potential of Phanerochaete chrysosporium is well established. Therefore, it was considered a standard culture for comparison and was collected from the MTCC, Chandigarh, India. Overall, all 4 selected isolates and the check organism were mutually compatible or synergistic with each other, and their consortium is useful for the accelerated decomposition of organic constituents during rapid composting.
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Affiliation(s)
- Deblina Roy
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal 741252 India
| | - Sunil Kumar Gunri
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal 741252 India
| | - Kamal Krishna Pal
- ICAR-National Institute of Abiotic Stress Management, Malegaon Khurd, Baramati, Maharashtra 413115 India
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Zhang J, Yang W, Feng D, Sun X. Optimized decomposition of fresh tomato remnants in facility soil. Heliyon 2024; 10:e29590. [PMID: 38655357 PMCID: PMC11036053 DOI: 10.1016/j.heliyon.2024.e29590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 04/09/2024] [Accepted: 04/10/2024] [Indexed: 04/26/2024] Open
Abstract
To return vegetable remnants to soil in situ and understand parameters that determine their decomposition efficiency, the tomato remnant length, soil moisture, soil temperature and dosage of a microbial decomposer (MD) have been evaluated through a laboratory experiment using a nylon mesh bag in this study. The results showed that the residual remnant weight, and total carbon content increased 28.49 % and 32.65 %, respectively with two different remnant lengths (∼0.5 cm and ∼2.5 cm), while the decay rate and organic carbon breakdown rate decreased by 6.14 % and 7.48 %, respectively. When the relative water content in soil increased, the residual remnant weight and total carbon content first decreased and then increased, while the trend of the decay rate (16.94 % with 80 % soil water content) and organic carbon breakdown rate (9.96 % with 60 % soil water content) were opposite. At a high MD dosage (7 % or 9 % of the total compost weight), both rates of remnants were greater than those at the low dosage (1 %), with an increase of 38.63 % or 36.19 % and 15.89 % or 15.78 %, respectively. With an increase in soil temperature, both residual remnant weight and total carbon content decreased first and then increased, while both decomposition rate and organic carbon breakdown rate increased first and then decreased by 27.35 % and 22.78 %, respectively at 45 °C, compared with those at 30 °C. It was concluded that the decomposition rate was significantly correlated with the remnant length and the MD dosage, while the organic carbon breakdown rate was significantly associated with all four parameters evaluated. The optimal decomposing efficiency was achieved through cutting tomato remnants to a length of ∼0.5 cm, maintaining soil relative moisture content at 89 %, keeping soil temperature at 50 °C, and adding 7 % microbial decomposer MD to chopped tomato cuttings.
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Affiliation(s)
- Jingmin Zhang
- Weifang University of Science and Technology/Shandong Facility Horticulture Bioengineering Research Center, Weifang, Shandong, China
| | - Wenxia Yang
- Weifang University of Science and Technology/Shandong Facility Horticulture Bioengineering Research Center, Weifang, Shandong, China
| | - Di Feng
- Weifang University of Science and Technology/Shandong Facility Horticulture Bioengineering Research Center, Weifang, Shandong, China
| | - Xiaoan Sun
- Weifang University of Science and Technology/Shandong Facility Horticulture Bioengineering Research Center, Weifang, Shandong, China
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Su RR, Pan BQ, Luo YX, Zheng XL, Lu W, Wang XY. Characterization of bacterial diversity and screening of cellulose-degrading bacteria in the gut system of Glenea cantor (Fabricius) larvae. Front Bioeng Biotechnol 2024; 12:1340168. [PMID: 38456003 PMCID: PMC10919226 DOI: 10.3389/fbioe.2024.1340168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 02/01/2024] [Indexed: 03/09/2024] Open
Abstract
The intestinal bacteria of longhorn beetles would be ideal targets for pest control and lignocellulosic resources by destroying or exploiting their cellulose-degrading function. This article aims to investigate the diversity and community structure of intestinal bacteria the oligophagous longhorn beetle Glenea cantor. Additionally, it seeks to identify the presence of lignocellulose-degrading bacteria in the gut, and explore their role in consuming host kapok trees Bombax malabaricum. In this study, the bacterial community from G. cantor was examined by Illumina sequencing of 16S ribosomal RNA (rRNA) targeting the V3 and V4 regions. A total of 563,201 valid sequences and 814 OTUs were obtained. The dominant phyla were Proteobacteria, and the dominant genera were Acinetobacter and Lactococcus. The analysis of microbial diversity revealed a high bacterial diversity in the samples, with the gut bacteria playing a crucial role in the physiological activities of the host, particularly, 9 genera of intestinal bacteria with cellulose degradation function were found, highlighting their vital role in cellulose degradation. Five strains of cellulose-degrading bacteria, belonging to the genus Pseudomonas, were obtained from the intestinal tract of G. cantor larvae using traditional isolation and culture techniques as well as 16S rDNA sequencing. Among these strains, A4 exhibited a cellulase activity of 94.42 ± 0.42 U/mL, while A5 displayed the highest filter paper enzyme activity of 127.46 ± 3.54 U/mL. These results offered valuable insights into potential targets for pest control through internal attack digestion and cellulose-degrading bacteria in longhorn beetles.
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Affiliation(s)
| | | | | | | | | | - Xiao-Yun Wang
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
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Chen J, Cai Y, Wang Z, Xu Z, Li J, Ma X, Zhuang W, Liu D, Wang S, Song A, Xu J, Ying H. Construction of a synthetic microbial community based on multiomics linkage technology and analysis of the mechanism of lignocellulose degradation. BIORESOURCE TECHNOLOGY 2023; 389:129799. [PMID: 37774801 DOI: 10.1016/j.biortech.2023.129799] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/22/2023] [Accepted: 09/22/2023] [Indexed: 10/01/2023]
Abstract
The efficient degradation of lignocellulose is a bottleneck for its integrated utilization. This research performed species analysis and made functional predictions in various ecosystems using multiomics coupling to construct a core synthetic microbial community with efficient lignocellulose degradation function. The synthetic microbial community was employed to degrade corn straw via solid-state fermentation. The degradation mechanisms were resolved using proteomics. The optimum culture conditions included 10% inoculum level (w/v), 4% nitrogen source ratio and a fermentation time of 23 d. Under these conditions, the degradation rates of cellulose, hemicellulose, and lignin were 34.91%, 45.94%, and 23.34%, respectively. Proteomic analysis revealed that lignin 1,4-β-xylanase, β-xylosidase and endo-1,4-β-xylanase were closely related to lignocellulose degradation. The metabolic pathways involved in lignocellulose degradation and the functional roles of eight strains were obtained. The synthesis of a microbial community via multiomics linkage technology can effectively decompose lignocellulose, which is useful for their further utilization.
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Affiliation(s)
- Jinmeng Chen
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Yafan Cai
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Zhi Wang
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Zhengzhong Xu
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Jia Li
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Xiaotian Ma
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Wei Zhuang
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China; National Engineering Technique Research Center for Biotechnology, State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 210009, China
| | - Dong Liu
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China; National Engineering Technique Research Center for Biotechnology, State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 210009, China
| | - Shilei Wang
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China.
| | - Andong Song
- College of Life Science, Henan Agricultural University, 218 Ping An Avenue, Zhengdong New District, Zhengzhou 450002, China
| | - Jingliang Xu
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China
| | - Hanjie Ying
- School of Chemical Engineering, Zhengzhou University, 100 Ke xue Dadao, Zhengzhou 450001, China; National Engineering Technique Research Center for Biotechnology, State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 210009, China
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Zhang S, Han S, Gao J, Yu X, Hu S. Low-temperature corn straw-degrading bacterial agent and moisture effects on indigenous microbes. Appl Microbiol Biotechnol 2023:10.1007/s00253-023-12644-8. [PMID: 37392246 PMCID: PMC10386949 DOI: 10.1007/s00253-023-12644-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 04/05/2023] [Accepted: 06/15/2023] [Indexed: 07/03/2023]
Abstract
While the in situ return of corn straw can improve soil fertility and farmland ecology, additional bacterial agents are required in low-temperature areas of northern China to accelerate straw degradation. Moisture is an important factor affecting microbial activity; however, owing to a lack of bacterial agents adapted to low-temperature complex soil environments, the effects of soil moisture on the interaction between exogenous bacterial agents and indigenous soil microorganisms remain unclear. To this end, we explored the effect of the compound bacterial agent CFF constructed using Pseudomonas putida and Acinetobacter lwoffii, developed to degrade corn straw in low-temperature soils (15 °C), on indigenous bacterial and fungal communities under dry (10% moisture content), slightly wet (20%), and wet (30%) soil-moisture conditions. The results showed that CFF application significantly affected the α-diversity of bacterial communities and changed both bacterial and fungal community structures, enhancing the correlation between microbial communities and soil-moisture content. CFF application also changed the network structure and the species of key microbial taxa, promoting more linkages among microbial genera. Notably, with an increase in soil moisture, CFF enhanced the rate of corn straw degradation by inducing positive interactions between bacterial and fungal genera and enriching straw degradation-related microbial taxa. Overall, our study demonstrates the alteration of indigenous microbial communities using bacterial agents (CFF) to overcome the limitations of indigenous microorganisms for in situ straw-return agriculture in low-temperature areas. KEY POINTS: • Low-temperature and variable moisture conditions (10-30%) were compared • Soil microbial network structure and linkages between genera were altered • CFF improves straw degradation via positive interactions between soil microbes.
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Affiliation(s)
- Sainan Zhang
- College of Agriculture, Inner Mongolia Agricultural University, 306 Zhaowunda Road, Saihan District, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China
| | - Shengcai Han
- Key Laboratory of Crop Cultivation and Genetic Improvement, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China
- College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot, 010000, People's Republic of China
| | - Julin Gao
- College of Agriculture, Inner Mongolia Agricultural University, 306 Zhaowunda Road, Saihan District, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China.
- Key Laboratory of Crop Cultivation and Genetic Improvement, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China.
| | - Xiaofang Yu
- College of Agriculture, Inner Mongolia Agricultural University, 306 Zhaowunda Road, Saihan District, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China.
- Key Laboratory of Crop Cultivation and Genetic Improvement, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China.
| | - Shuping Hu
- College of Agriculture, Inner Mongolia Agricultural University, 306 Zhaowunda Road, Saihan District, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China
- Key Laboratory of Crop Cultivation and Genetic Improvement, Inner Mongolia Autonomous Region, 010000, Hohhot, People's Republic of China
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Wang J, Zhang H, Cai J, Li J, Sun B, Wu F. Effects of different carbon substrates on PAHs fractions and microbial community changes in PAHs-contaminated soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 324:121367. [PMID: 36858100 DOI: 10.1016/j.envpol.2023.121367] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/24/2023] [Accepted: 02/25/2023] [Indexed: 06/18/2023]
Abstract
Different types of carbon substrates were widely used in soil remediation. However, differences of their impacts and related mechanisms on degradation of polycyclic aromatic hydrocarbons (PAHs) and microbial community structures in contaminated soil still remain unclear. Here, we investigated the effects of corn straw (S), glucose (G), straw combined with glucose (SG), and sodium azide (N, as an abiotic control) on PAHs fractions and bacterial communities in soil. After 70 days' microcosm experiments, total PAHs concentrations were significantly reduced by 30.9%, 19.5% and 44.6% under S, G and SG treatments. Water soluble, acid soluble and residual PAHs under all treatments were significantly decreased after 70 days of incubation, while organically bound PAHs were increased by 11.4%, 22.7% and 36.1% under G, S and SG treatments. Additionally, straw and glucose application increased relative abundance related PAHs-degrading bacteria and the copy numbers of gram-negative (PAHs-RHDα GN) and gram-positive genes (PAHs-RHDα GP) in the contaminated soil. Redundancy analysis (RDA) and Random Forest (RF) indicated that PAHs fractions are crucial factors for biodegradation of PAHs in PAHs-contaminated soils amended with carbon substrates. These suggested that carbon substrates contributed to PAHs conversion from residual PAHs (nonlabile fractions) to organically bound PAHs and thus increased the potential for PAHs conversion to water-soluble and organic acid-soluble PAHs, which were more easy to be utilized by soil microorganisms. This study revealed the new insights of different carbon substrates on degradation and dynamic changes of PAHs fractions and the better potential of combined application of straw and glucose in enhancing degradation of PAHs in PAHs-contaminated soils.
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Affiliation(s)
- Jinfeng Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, PR China; Institute of Eco-environment and Industrial Technology, Shanxi Agricultural University/Shanxi Province Key Laboratory of Soil Environment and Nutrient Resources, Taiyuan, 030031, Shanxi, PR China
| | - He Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Shaanxi, PR China
| | - Jun Cai
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Shaanxi, PR China
| | - Jia Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, PR China
| | - Benhua Sun
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Shaanxi, PR China
| | - Fuyong Wu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Shaanxi, PR China.
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9
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Sun R, Wang X, Alhaj Hamoud Y, Lu M, Shaghaleh H, Zhang W, Zhang C, Ma C. Dynamic variation of bacterial community assemblage and functional profiles during rice straw degradation. Front Microbiol 2023; 14:1173442. [PMID: 37125169 PMCID: PMC10140369 DOI: 10.3389/fmicb.2023.1173442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 03/23/2023] [Indexed: 05/02/2023] Open
Abstract
Bacteria is one of the most important drivers of straw degradation. However, the changes in bacterial community assemblage and straw-decomposing profiles during straw decomposition are not well understood. Based on cultivation-dependent and independent technologies, this study revealed that the "common species" greatly contributed to the dynamic variation of bacterial community during straw decomposition. Twenty-three functional strains involved in straw decomposition were isolated, but only seven were detected in the high-throughput sequencing data. The straw decomposers, including the isolated strains and the agents determined by functional prediction, constituted only 0.024% (on average) of the total bacterial community. The ecological network showed that most of the identified decomposers were self-existent without associations with other species. These results showed that during straw composition, community assembly might be greatly determined by the majority, but straw decomposition functions might be largely determined by the minority and emphasized the importance of the rare species in community-specific functions.
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Affiliation(s)
- Ruibo Sun
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | - Xin Wang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | | | - Mengxing Lu
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | - Hiba Shaghaleh
- College of Environment, Hohai University, Nanjing, China
| | - Wenjie Zhang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | - Chaochun Zhang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
- *Correspondence: Chaochun Zhang, ; Chao Ma,
| | - Chao Ma
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
- *Correspondence: Chaochun Zhang, ; Chao Ma,
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Gong X, Yu Y, Hao Y, Wang Q, Ma J, Jiang Y, Lv G, Li L, Qian C. Characterizing corn-straw-degrading actinomycetes and evaluating application efficiency in straw-returning experiments. Front Microbiol 2022; 13:1003157. [PMID: 36545193 PMCID: PMC9760696 DOI: 10.3389/fmicb.2022.1003157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 11/16/2022] [Indexed: 12/10/2022] Open
Abstract
Corn straw is an abundant lignocellulose resource and by-product of agricultural production. With the continuous increase in agricultural development, the output of corn straw is also increasing significantly. However, the inappropriate disposal of straw results in wasting of resources, and also causes a serious ecological crisis. Screening microorganisms with the capacity to degrade straw and understanding their mechanism of action is an efficient approach to solve such problems. For this purpose, our research group isolated three actinomycete strains with efficient lignocellulose degradation ability from soil in the cold region of China: Streptomyces sp. G1T, Streptomyces sp. G2T and Streptomyces sp. G3T. Their microbial properties and taxonomic status were assessed to improve our understanding of these strains. The three strains showed typical characteristics of the genus Streptomyces, and likely represent three different species. Genome functional annotation indicated that most of their genes were related to functions like carbohydrate transport and metabolism. In addition, a similar phenomenon also appeared in the COG and CAZyme analyses, with a large number of genes encoding carbohydrate-related hydrolases, such as cellulase, glycosidase and endoglucanase, which could effectively destroy the structure of lignocellulose in corn straw. This unambiguously demonstrated the potential of the three microorganisms to hydrolyze macromolecular polysaccharides at the molecular level. In addition, in the straw-returning test, the decomposing consortium composed of the three Streptomyces isolates (G123) effectively destroyed the recalcitrant bonds between the various components of straw, and significantly reduced the content of active components in corn straw. Furthermore, microbial diversity analysis indicated that the relative abundance of Proteobacteria, reportedly associated with soil antibiotic resistance and antibiotic degradation, was significantly improved with straw returning at both tested time points. The microbial diversity of each treatment was also dramatically changed by supplementing with G123. Taken together, G123 has important biological potential and should be further studied, which will provide new insights and strategies for appropriate treatment of corn straw.
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Affiliation(s)
- Xiujie Gong
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Yang Yu
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Yubo Hao
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Qiuju Wang
- Heilongjiang Academy of Black Soil Conservation and Utilization, Harbin, China
| | - Juntao Ma
- Institute of Biotechnology, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Yubo Jiang
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Guoyi Lv
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Liang Li
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Chunrong Qian
- Institute of Farming and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin, China
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Liu X, Qi Y, Lian J, Song J, Zhang S, Zhang G, Fan J, Zhang N. Construction of actinomycetes complex flora in degrading corn straw and an evaluation of their degradative effects. Biotechnol Lett 2022; 44:1477-1493. [DOI: 10.1007/s10529-022-03313-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 10/04/2022] [Accepted: 10/11/2022] [Indexed: 11/02/2022]
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12
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Shi M, Ma Z, Tian Y, Ma C, Li Y, Zhang X. Effects of corn straw treated with CaO on rumen degradation characteristics and fermentation parameters and their correlation with microbial diversity in rumen. Anim Feed Sci Technol 2022. [DOI: 10.1016/j.anifeedsci.2022.115403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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13
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Dong X, Ji J, Zhang S, Peng D, Wang Y, Zhang L, Li J, Wang G. Study on a Low-temperature Cellulose-degrading Strain: Fermentation Optimization, Straw Degradation, and the Effect of Fermentation Broth on Seed Growth. BIOTECHNOL BIOPROC E 2022. [DOI: 10.1007/s12257-021-0265-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Zhang G, Dong Y. Design and application of an efficient cellulose-degrading microbial consortium and carboxymethyl cellulase production optimization. Front Microbiol 2022; 13:957444. [PMID: 35910619 PMCID: PMC9335055 DOI: 10.3389/fmicb.2022.957444] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 06/28/2022] [Indexed: 11/30/2022] Open
Abstract
Microbial consortia with high cellulase activities can speed up the composting of agricultural wastes with high cellulose contents and promote the beneficial utilization of agricultural wastes. In this paper, rabbit feces and sesame oil cake were used as feedstocks for compost production. Cellulose-degrading microbial strains were isolated from compost samples taken at the different composting stages and screened via Congo red staining and filter paper degradation test. Seven strains, Trichoderma reesei, Escherichia fergusonii, Proteus vulgaris, Aspergillus glaucus, Bacillus mycoides, Corynebacterium glutamicum, and Serratia marcescens, with high activities of carboxymethyl cellulase (CMCase), filter paper cellulase (FPase), and β-glucosidase (β-Gase) were identified and selected for consortium design. Six microbial consortia were designed with these strains. Compared with the other five consortia, consortium VI composed of all seven strains displayed the highest cellulase activities, 141.89, 104.56, and 131.18 U/ml of CMCase, FPase, and β-Gase, respectively. The single factor approach and response surface method were employed to optimize CMCase production of consortium VI. The optimized conditions were: culture time 4.25 days, culture temperature 35.5°C, pH 6.6, and inoculum volume 5% (v/v). Under these optimized conditions, the CMCase activity of consortium VI was up to 170.83 U/ml. Fermentation experiment of rabbit feces was carried out by using the consortium VI cultured under the optimal conditions. It was found that the application effect was better than other treatments, and the fermentation efficiency and nutrient content of the pile were significantly improved. This study provides a basis for the design of microbial consortia for the composting of agricultural wastes with high cellulose contents and provides a support for beneficial utilization of agricultural wastes.
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Shi M, Ma Z, Tian Y, Zhang X, Shan H. Effects of maize straw treated with various levels of CaO and moisture on composition, structure, and digestion by in vitro gas production. Anim Biosci 2021; 34:1940-1950. [PMID: 34474535 PMCID: PMC8563234 DOI: 10.5713/ab.21.0184] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 07/21/2021] [Indexed: 11/27/2022] Open
Abstract
OBJECTIVE The objective of this study was to explore the effects of maize straw treated with calcium oxide (CaO) and various moisture, on the composition and molecular structure of the fiber, and gas production by fermentation in an in vitro rumen environment. METHODS The experiment used 4×3 Factorial treatment. Maize straws were treated with 4 concentrations of CaO (0%, 3%, 5%, and 7% of dry straw weight) and 3 moisture contents (40%, 50%, and 60%). Scanning electron microscopy, Fourier transform infrared spectroscopy and X-ray fluorescence spectroscopy were employed to measure the surface texture, secondary molecular structure of carbohydrate, and calcium (Ca) content of the maize straw, respectively. The correlation of secondary molecular structures and fiber components of maize straw were analyzed by CORR procedure of SAS 9.2. In vitro rumen fermentation was performed for 6, 12, 24, 48, and 72 h to measure gas production. RESULTS Overall, the moisture factor had no obvious effect on the experimental results. Neutral detergent fiber (NDF), acid detergent fiber, acid detergent lignin, hemicellulose and cellulose contents decreased (p<0.05) with increasing concentrations of CaO treatment. Surface and secondary molecular structure of maize straw were affected by various CaO and moisture treatments. NDF had positive correlation (p<0.01) with Cell-H (H, height), Cell-A (A, area), CHO-2-H. Hemicellulose had positive correlation (p<0.01) with Lignin-H, Lignin-A, Cell-H, Cell-A. Ca content of maize straw increased as the concentration of CaO was increased (p<0.01). Gas production was highest in the group treated with 7% CaO. CONCLUSION CaO can adhere to the surface of the maize straw, and then improve the digestibility of the maize straw in ruminants by modifying the structure of lignocellulose and facilitating the maize straw for microbial degradation.
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Affiliation(s)
- Mingjun Shi
- Tianjin Key Laboratory of Agricultural Animal Breeding and Healthy Husbandry, College of Animal Science and Veterinary Medicine, Tianjin Agricultural University, Tianjin 300384, China
| | - Zhanxia Ma
- Tianjin Key Laboratory of Agricultural Animal Breeding and Healthy Husbandry, College of Animal Science and Veterinary Medicine, Tianjin Agricultural University, Tianjin 300384, China
| | - Yujia Tian
- Tianjin Key Laboratory of Agricultural Animal Breeding and Healthy Husbandry, College of Animal Science and Veterinary Medicine, Tianjin Agricultural University, Tianjin 300384, China
| | - Xuewei Zhang
- Tianjin Key Laboratory of Agricultural Animal Breeding and Healthy Husbandry, College of Animal Science and Veterinary Medicine, Tianjin Agricultural University, Tianjin 300384, China
| | - Huiyong Shan
- College of Engineering and Technology, Tianjin Agricultural University, Tianjin 300392, China
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Wang J, Zhu D, Zhao S, Xu S, Yang R, Zhao W, Zhang X, Huang Z. Effect of liquid volume and microflora source on degradation rate and microbial community in corn stover degradation. AMB Express 2021; 11:80. [PMID: 34061258 PMCID: PMC8169732 DOI: 10.1186/s13568-021-01233-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Accepted: 05/15/2021] [Indexed: 11/10/2022] Open
Abstract
Degradation is the bottleneck in the utilization of crop straw. In this paper, we screened the microbial consortia degrading corn stover from straw degrading consortia MC1 (M), sheep feces (Y), and mixtures (Q) of M, Y, and cattle feces. The effects of microflora source and liquid volume (representing dissolved oxygen) on the microbial community and degradation rate of corn stover were investigated. The results showed that the degradation rate and cellulase activity of a 200 mL liquid volume (L2) were significantly higher than that of 100 mL (L1). Microflora source had a significant effect on bacterial and fungal diversity, composition and taxa. Q and Y had higher bacterial and fungal α-diversity than that of M. The degradation rate was significantly correlated with cellulase activity but not with microbial diversity. This indicated that liquid volume had a significant effect on degradation rate while microflora source had a significant effect on microbial community in corn stover degradation.
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