The implications of herd entrustment practice for the sustainable use of cattle genetic resources in the (agro)-pastoral systems of West Africa: A case study from Benin

Nutritional Value of Climate-Resilient Forage Species Sustaining Peri-Urban Dairy Cow Production in the Coastal Grasslands of Benin (West Africa)

Along the coast of West Africa, grazing ruminants rely on perennial forage species remaining in uncultivated plots, roadsides, and marshlands during the dry season. To assess the quality of these forages, thirteen drought-tolerant plants were harvested at the mature stage, and the samples were evaluated for chemical composition, in vitro fermentation characteristics, and metabolizable energy (ME) content. They are ten drought-tolerant grasses, including: Andropogon virginicus, Brachiaria deflexa, Cenchorus biflorus, Dactyloctenium aegyptium, Eragrostis tremula, Leptochloa caerulescens, Loudetia aroundinacea, Paspalum notatum, Paspalum vaginatum, Pennisetum purpureum, two perennial herbs, Chamaecrista rotundifolia, Zornia latifolia, and one multipurpose tree, Elaeis guineensis. Legume species had the highest nutritional value (highest crude protein and ME, and lowest neutral detergent fiber) of the species studied. In terms of the in vitro data, the gas produced after 120 h of incubation ranged from 149 mL/g in E. tremula to 185 mL/g in Paspalum. Z. latifoliaa and had the fastest rate of fermentation, producing half of the total gas in 19.5 h, whereas E. tremula required 49.9 h (p < 0.01). The production of branched-chain fatty acids (isobutyrate and isovalerate) was greatest for E. guineensis and the lowest in both Paspalum species (p < 0.01). The study suggests the need for the protein supplementation of the animals to ensure maximum forage utilization and to satisfy the nutrient requirements of ruminant livestock.

Dynamics of changes in the breed composition of pastoral and agro-pastoral cattle herds in Benin: implications for the sustainable use of indigenous breeds

Data for concretely analyzing current trends regarding breed composition of cattle herds at the national scale and the logic behind it are lacking in Benin. This study aimed to investigate the factors affecting the dynamics of breed composition in traditional Beninese cattle herds. In this regard, the main reasons for acquiring new breeds by herders and management strategies for animal genetic diversity in herds were targeted. Using a semi-structured questionnaire, a total of 753 cattle herds were surveyed in six pastoral communities along a north-south transect in Benin. Data collection included original breed composition of the herds (at their installation), cattle breeds introduced in the last five years, reasons for introducing new breeds, herders' breed preferences, and perceptions concerning productive and adaptive traits of the existing breeds in the study area. Descriptive analyses of herd composition revealed breed redistribution across the country with the increasing introduction of zebu in the southern region of the country. A high percentage of nondescript crossbreeds was associated with herders' willingness to improve both milk and meat production. In this regard, the analysis of herders' perceptions using the Friedman test ranked most zebu cattle breeds as the most productive. In contrast, the taurine breeds were highly ranked by herders for their adaptive features. This study confirms that herders' breed choices fit their production objectives. In addition, strategies for effectively and efficiently managing genetic diversity within herds are expected to increase animal productivity while conserving adaptive and special traits in local breeds. The effectiveness of herders’ knowledge of local cattle breeds as well as their experience may increase the success of such strategies and facilitate their adoption.

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Redistribution of cattle breeds across the country.

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Increasing presence of Zebu in the humid and sub-humid regions.

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Emergence of nondescript crossbreed along the transect north-south.

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Increasing threat to the genetic integrity of the indigenous taurine cattle.

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Urgent need for sustainable management of cattle genetic resources.

Unraveling Admixture, Inbreeding, and Recent Selection Signatures in West African Indigenous Cattle Populations in Benin

The Dwarf Lagune and the Savannah Somba cattle in Benin are typical representatives of the endangered West African indigenous Shorthorn taurine. The Lagune was previously exported to African and European countries and bred as Dahomey cattle, whereas the Somba contributed to the formation of two indigenous hybrids known as Borgou and Pabli cattle. These breeds are affected by demographic, economic, and environmental pressures in local production systems. Considering current and historical genomic data, we applied a formal test of admixture, estimated admixture proportions, and computed genomic inbreeding coefficients to characterize the five breeds. Subsequently, we unraveled the most recent selection signatures using the cross-population extended haplotype homozygosity approach, based on the current and historical genotypes. Results from principal component analyses and high proportion of Lagune ancestry confirm the Lagune origin of the European Dahomey cattle. Moreover, the Dahomey cattle displayed neither indicine nor European taurine (EUT) background, but they shared on average 40% of autozygosity from common ancestors, dated approximately eight generations ago. The Lagune cattle presented inbreeding coefficients larger than 0.13; however, the Somba and the hybrids (Borgou and Pabli) were less inbred (≤0.08). We detected evidence of admixture in the Somba and Lagune cattle, but they exhibited a similar African taurine (AFT) ancestral proportion (≥96%) to historical populations, respectively. A moderate and stable AFT ancestral proportion (62%) was also inferred for less admixed hybrid cattle including the Pabli. In contrast, the current Borgou samples displayed a lower AFT ancestral proportion (47%) than historical samples (63%). Irrespective of the admixture proportions, the hybrid populations displayed more selection signatures related to economic traits (reproduction, growth, and milk) than the taurine. In contrast, the taurine, especially the Somba, presented several regions known to be associated with adaptive traits (immunity and feed efficiency). The identified subregion of bovine leukocyte antigen (BoLA) class IIb (including DSB and BOLA-DYA) in Somba cattle is interestingly uncommon in other African breeds, suggesting further investigations to understand its association with specific adaptation to endemic diseases in Benin. Overall, our study provides deeper insights into recent evolutionary processes in the Beninese indigenous cattle and their aptitude for conservation and genetic improvement.

First DNA Sequencing in Beninese Indigenous Cattle Breeds Captures New Milk Protein Variants

This study investigated polymorphisms in the milk protein genes CSN1S1, CSN2, CSN1S2, CSN3, LALBA, and LGB, and casein haplotypes in Beninese indigenous cattle. Considering 67 animals, DNA sequencing of the genes' exons, flanking regions and parts of the 5'-upstream regions identified 1058 genetic variants including 731 previously unknown. In addition, four novel milk protein variants were detected, including CSN3K (p.Ala66Val), LALBAF (p.Arg58Trp), LGBB1 (p.Ala134Val) and LGBK (p.Thr92Asnfs*13). CSN3K is caused by a novel SNP (BTA6:85656526C>T, exon 4) whereas LALBAF and LGBB1 are due to rs714688595C>T (exon 1) and rs109625649C>T (exon 4), respectively. Regarding LGBK, a frameshift insertion of one adenine residue at BTA11:103257980 (exon 3) induces a premature translation termination resulting in a 46% reduction of the reference protein sequence. The casein polymorphisms formed five main CSN1S1-CSN2-CSN1S2-CSN3 haplotypes including B-A1-A-B, B-A1-A-A and C-A2-A-B which are predominant in the investigated cattle breeds. Moreover, in silico analyses of polymorphisms within the 5'- and 3'- untranslated regions of all six milk proteins revealed effects on microRNA and transcription factor binding sites. This study suggests a large genetic variation of milk protein genes in Beninese cattle, which should be investigated in further studies for their effects on milk production, including quality and yield traits.