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For: Coutinho FH, Silveira CB, Sebastián M, Sánchez P, Duarte CM, Vaqué D, Gasol JM, Acinas SG. Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. Microbiome 2023;11:118. [PMID: 37237317 PMCID: PMC10224230 DOI: 10.1186/s40168-023-01547-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 04/10/2023] [Indexed: 05/28/2023]
Number Cited by Other Article(s)
1
Tang A, Zhang J, Huang J, Deng Y, Wang D, Yu P, Zhao R, Wang Y, Chen Z, Zhang T, Li B. Decrypting the viral community in aerobic activated sludge reactors treating antibiotic production wastewater. WATER RESEARCH 2024;265:122253. [PMID: 39167968 DOI: 10.1016/j.watres.2024.122253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/31/2024] [Accepted: 08/10/2024] [Indexed: 08/23/2024]
2
Robinson D, Morgan-Kiss RM, Wang Z, Takacs-Vesbach C. Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes. Front Microbiol 2024;15:1422941. [PMID: 39318431 PMCID: PMC11421388 DOI: 10.3389/fmicb.2024.1422941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 08/15/2024] [Indexed: 09/26/2024]  Open
3
He Y, Zhuo S, Gao D, Pan Y, Li M, Pan J, Jiang Y, Hu Y, Guo J, Lin Q, Sanford RA, Sun W, Shang J, Wei N, Peng S, Jiang Z, Li S, Li Y, Dong Y, Shi L. Viral communities in a pH>10 serpentinite-like environment: insight into diversity and potential roles in modulating the microbiomes by bioactive vitamin B9 synthesis. Appl Environ Microbiol 2024;90:e0085024. [PMID: 39016614 PMCID: PMC11337834 DOI: 10.1128/aem.00850-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 06/26/2024] [Indexed: 07/18/2024]  Open
4
Zhao Z, Amano C, Reinthaler T, Baltar F, Orellana MV, Herndl GJ. Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. Nat Commun 2024;15:6411. [PMID: 39080340 PMCID: PMC11289388 DOI: 10.1038/s41467-024-50867-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 07/24/2024] [Indexed: 08/02/2024]  Open
5
Sánchez P, Coutinho FH, Sebastián M, Pernice MC, Rodríguez-Martínez R, Salazar G, Cornejo-Castillo FM, Pesant S, López-Alforja X, López-García EM, Agustí S, Gojobori T, Logares R, Sala MM, Vaqué D, Massana R, Duarte CM, Acinas SG, Gasol JM. Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. Sci Data 2024;11:154. [PMID: 38302528 PMCID: PMC10834958 DOI: 10.1038/s41597-024-02974-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 01/16/2024] [Indexed: 02/03/2024]  Open
6
Sun X, Jiang H, Zhang S. Diversities and interactions of phages and bacteria in deep-sea sediments as revealed by metagenomics. Front Microbiol 2024;14:1337146. [PMID: 38260883 PMCID: PMC10801174 DOI: 10.3389/fmicb.2023.1337146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Accepted: 12/18/2023] [Indexed: 01/24/2024]  Open
7
Bolaños LM, Michelsen M, Temperton B. Metagenomic time series reveals a Western English Channel viral community dominated by members with strong seasonal signals. THE ISME JOURNAL 2024;18:wrae216. [PMID: 39441997 PMCID: PMC11561400 DOI: 10.1093/ismejo/wrae216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Revised: 09/24/2024] [Accepted: 10/22/2024] [Indexed: 10/25/2024]
8
Tsiola A, Michoud G, Daffonchio D, Fodelianakis S, Giannakourou A, Malliarakis D, Pavlidou A, Pitta E, Psarra S, Santi I, Zeri C, Pitta P. Depth-driven patterns in lytic viral diversity, auxiliary metabolic gene content, and productivity in offshore oligotrophic waters. Front Microbiol 2023;14:1271535. [PMID: 38029212 PMCID: PMC10653327 DOI: 10.3389/fmicb.2023.1271535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 10/13/2023] [Indexed: 12/01/2023]  Open
9
Peng Y, Lu Z, Pan D, Shi LD, Zhao Z, Liu Q, Zhang C, Jia K, Li J, Hubert CRJ, Dong X. Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species. THE ISME JOURNAL 2023;17:1774-1784. [PMID: 37573455 PMCID: PMC10504277 DOI: 10.1038/s41396-023-01491-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 08/01/2023] [Accepted: 08/01/2023] [Indexed: 08/14/2023]
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