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Huymann LR, Hannecker A, Giovanni T, Liimatainen K, Niskanen T, Probst M, Peintner U, Siewert B. Revised taxon definition in European Cortinarius subgenus Dermocybe based on phylogeny, chemotaxonomy, and morphology. Mycol Prog 2024; 23:26. [PMID: 38585620 PMCID: PMC10997704 DOI: 10.1007/s11557-024-01959-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 02/06/2024] [Accepted: 02/12/2024] [Indexed: 04/09/2024]
Abstract
Cortinarius (Fr.) Fr. is one of the most species-rich genera in the Agaricales (Basidiomycota). Cortinarius subgen. Dermocybe (Fr.) Trog includes brightly coloured Cortinarii with anthraquinone pigments. The chemotaxonomic approach has always been as important as classical methods for species definition of Dermocybe and helped to improve overall species concepts. However, some species concepts within this group remain unclear. We therefore address this topic based on a combined phylogenetic, morphological, and pigment-chemical approach. For this, sequence data, HPLC-MS pigment profiles and spore sizes were included were included to obtain a better resolution of taxa. The study was based on 173 recent collections and 12 type specimens. A total of 117 rDNA ITS sequences were produced from the collections in this study, 102 sequences were retrieved from databases. We could detect and clearly delimit 19 Dermocybe species occurring in central European habitats, from which 16 are discussed in detail. Additionally, we grouped the detected anthraquinone pigments into four groups. This detailed analysis of dermocyboid Cortinarius species occurring in a restricted number of habitat types confirmed our hypothesis that species diversity is much higher than currently assumed. This high diversity is blurred by too wide and incorrect species concepts of several classical species like C. croceus and C. cinnamomeus. Molecular and chemotaxonomical studies carried out together with careful phenotypical analyses resulted in a good differentiation of species. A key is presented for these taxa to allow a better identification of Cortinarius subgenus Dermocybe spp. occurring in Central Europe mainly in the alpine range. Supplementary Information The online version contains supplementary material available at 10.1007/s11557-024-01959-z.
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Affiliation(s)
- Lesley Rosina Huymann
- Department of Microbiology, University Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
- Department of Pharmacognosy, Institute of Pharmacy, Center for Chemistry and Biomedicine, University Innsbruck, Innrain 80 - 82/IV, 6020 Innsbruck, Austria
| | - Anna Hannecker
- Department of Pharmacognosy, Institute of Pharmacy, Center for Chemistry and Biomedicine, University Innsbruck, Innrain 80 - 82/IV, 6020 Innsbruck, Austria
| | | | - Kare Liimatainen
- Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB UK
| | - Tuula Niskanen
- Botany Unit, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, 00014 Helsinki, Finland
| | - Maraike Probst
- Department of Microbiology, University Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
| | - Ursula Peintner
- Department of Microbiology, University Innsbruck, Technikerstraße 25d, 6020 Innsbruck, Austria
| | - Bianka Siewert
- Department of Pharmacognosy, Institute of Pharmacy, Center for Chemistry and Biomedicine, University Innsbruck, Innrain 80 - 82/IV, 6020 Innsbruck, Austria
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Gafforov Y, Rašeta M, Rapior S, Yarasheva M, Wang X, Zhou L, Wan-Mohtar WAAQI, Zafar M, Lim YW, Wang M, Abdullaev B, Bussmann RW, Zengin G, Chen J. Macrofungi as Medicinal Resources in Uzbekistan: Biodiversity, Ethnomycology, and Ethnomedicinal Practices. J Fungi (Basel) 2023; 9:922. [PMID: 37755030 PMCID: PMC10532728 DOI: 10.3390/jof9090922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 09/08/2023] [Accepted: 09/11/2023] [Indexed: 09/28/2023] Open
Abstract
Interest in edible and medicinal macrofungi is millennial in terms of their uses in health and food products in Central Asia, while interest in inedible and medicinal macrofungi has grown in popularity in recent years. Edible and inedible medicinal basidiomycetes were collected during field surveys from different regions of Uzbekistan. The morphological characters and similarity assessment of rDNA-Internal Transcribed Spacer sequence data were used to measure diversity and habitat associations. A number of 17 species of medicinal macrofungi of ethnomycological and medicinal interest was found associated with 23 species of trees and shrubs belonging to 11 families and 14 genera. Polyporaceae and Hymenochaetaceae were represented by the highest number of species followed by Ganodermataceae, Fomitopsidaceae, Auriculariaceae, Cerrenaceae, Grifolaceae, Phanerochaetaceae, Laetiporaceae, Schizophyllaceae, and Stereaceae. The highest number of medicinal basidiomycete species was reported in the following host genera: Acer, Betula, Celtis, Crataegus, Juglans, Juniperus, Lonicera, Malus, Morus, Platanus, Populus, Prunus, Quercus, and Salix. An updated list of edible and inedible medicinal mushrooms identified in Uzbekistan, their morphological characteristics, and phylogenetic placement are given for the first time. Information is provided on their uses in traditional and modern medicine. Their bioactive compounds and extracts can be applied as medicines, as well as food and cosmetic ingredients.
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Affiliation(s)
- Yusufjon Gafforov
- New Uzbekistan University, Tashkent 100007, Uzbekistan
- Central Asian University, Tashkent 111221, Uzbekistan
- Mycology Laboratory, Institute of Botany, Academy of Sciences of Republic of Uzbekistan, Tashkent 100125, Uzbekistan
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Milena Rašeta
- Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences, University of Novi Sad, Trg Dositeja Obradovića 3, 21000 Novi Sad, Serbia
| | - Sylvie Rapior
- CEFE, CNRS, University of Montpellier, EPHE, IRD, 15 Avenue Charles Flahault, CS 14491, CEDEX 5, 34093 Montpellier, France
- Laboratory of Botany, Phytochemistry and Mycology, Faculty of Pharmacy, 15 Avenue Charles Flahault, CS 14491, CEDEX 5, 34093 Montpellier, France
| | - Manzura Yarasheva
- Tashkent International University of Education, Tashkent 100207, Uzbekistan
| | - Xuewei Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 101408, China
| | - Liwei Zhou
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Wan Abd Al Qadr Imad Wan-Mohtar
- Functional Omics and Bioprocess Development Laboratory, Institute of Biological Sciences, Faculty of Science, University Malaya, Kuala Lumpur 50603, Malaysia
| | - Muhammad Zafar
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Young Woon Lim
- School of Biological Sciences, Institute of Microbiology, Seoul National University, Seoul 08826, Republic of Korea
| | - Mengcen Wang
- State Key Laboratory of Rice Biology, Ministry of Agricultural and Rural Affairs Laboratory of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou 310058, China
| | | | - Rainer W. Bussmann
- Department of Ethnobotany, State Museum of Natural History, 76133 Karlsruhe, Germany;
- Department of Ethnobotany, Institute of Botany and Bakuriani Alpine Botanical Garden, Ilia State University, Botanical Street 1, 0105 Tbilisi, Georgia
| | - Gokhan Zengin
- Department of Biology, Science Faculty, Selçuk University, Konya 42130, Turkey
| | - Jiajia Chen
- College of Landscape Architecture, Jiangsu Vocational College of Agriculture and Forestry, Zhenjiang 212400, China
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Cristini V, Nop P, Zlámal J, Vand MH, Šeda V, Tippner J. Fomes fomentarius and F. inzengae—A Comparison of Their Decay Patterns on Beech Wood. Microorganisms 2023; 11:microorganisms11030679. [PMID: 36985251 PMCID: PMC10056366 DOI: 10.3390/microorganisms11030679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 03/02/2023] [Accepted: 03/03/2023] [Indexed: 03/09/2023] Open
Abstract
Wood-decaying fungi are responsible for the degradation of wood and the alteration in its material properties. Fomes fomentarius (L.) Fr. is one of the most common white-rot fungi colonising coarse wood and standing trees. In recent years, according to their genetic, physiological, and morphological differences, Fomes inzengae (Ces. and De Not.) Lécuru was identified as an independent species. This article aimed to compare the impact of the degradation caused by both species on the anatomical, physical, and mechanical properties of beech wood. When comparing the degradation caused by different strains of both species, no statistically significant difference was found in mass loss (ML) or moisture content (MC). A relevant correlation between ML and MC was confirmed for both species. Variabilities in the density distribution of the degraded and intact bending samples were found to be statistically different. No relevant difference was observed in the modulus of rupture (MOR) between the two species after each exposure period. A strong linear relationship between the MOR and the dynamic modulus of elasticity was revealed for both species. Both species showed decay patterns typical for simultaneous white rot and soft rot. According to the presented results, the impact of both species on the investigated material properties of wood cannot be considered significantly different.
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Affiliation(s)
- Valentino Cristini
- Department of Wood Science and Technology, Mendel University in Brno, 613 00 Brno, Czech Republic
| | - Patrik Nop
- Department of Wood Science and Technology, Mendel University in Brno, 613 00 Brno, Czech Republic
| | - Jan Zlámal
- Department of Wood Science and Technology, Mendel University in Brno, 613 00 Brno, Czech Republic
| | - Mojtaba Hassan Vand
- Department of Wood Science and Technology, Mendel University in Brno, 613 00 Brno, Czech Republic
| | - Vít Šeda
- Department of Wood Science and Technology, Mendel University in Brno, 613 00 Brno, Czech Republic
| | - Jan Tippner
- Department of Wood Science and Technology, Mendel University in Brno, 613 00 Brno, Czech Republic
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Zhuykova EV, Mukhin VA. Diversity and Ecological Features of Phylogenetic Lineages of Tinder Fungus in the Urals. RUSS J ECOL+ 2022. [DOI: 10.1134/s1067413622050113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Balamurugan JP, Supramani S, Ahmad Usuldin SR, Ilham Z, Klaus A, Khairul Ikram NK, Ahmad R, Wan-Mohtar WAAQI. Efficient biomass-endopolysaccharide production from an identified wild-Serbian Ganoderma applanatum strain BGS6Ap mycelium in a controlled submerged fermentation. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2021.102166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Cao B, Haelewaters D, Schoutteten N, Begerow D, Boekhout T, Giachini AJ, Gorjón SP, Gunde-Cimerman N, Hyde KD, Kemler M, Li GJ, Liu DM, Liu XZ, Nuytinck J, Papp V, Savchenko A, Savchenko K, Tedersoo L, Theelen B, Thines M, Tomšovský M, Toome-Heller M, Urón JP, Verbeken A, Vizzini A, Yurkov AM, Zamora JC, Zhao RL. Delimiting species in Basidiomycota: a review. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00479-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Zhou D, Xu J, Dong J, Li H, Wang D, Gu J, Zhang KQ, Zhang Y. Historical Differentiation and Recent Hybridization in Natural Populations of the Nematode-Trapping Fungus Arthrobotrys oligospora in China. Microorganisms 2021; 9:1919. [PMID: 34576814 PMCID: PMC8465350 DOI: 10.3390/microorganisms9091919] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 09/06/2021] [Accepted: 09/07/2021] [Indexed: 01/10/2023] Open
Abstract
Maintaining the effects of nematode-trapping fungi (NTF) agents in order to control plant-parasitic nematodes (PPNs) in different ecological environments has been a major challenge in biological control applications. To achieve such an objective, it is important to understand how populations of the biocontrol agent NTF are geographically and ecologically structured. A previous study reported evidence for ecological adaptation in the model NTF species Arthrobotrys oligospora. However, their large-scale geographic structure, patterns of gene flow, their potential phenotypic diversification, and host specialization remain largely unknown. In this study, we developed a new panel of 20 polymorphic short tandem repeat (STR) markers and analyzed 239 isolates of A. oligospora from 19 geographic populations in China. In addition, DNA sequences at six nuclear gene loci and strain mating types (MAT) were obtained for these strains. Our analyses suggest historical divergence within the A. oligospora population in China. The genetically differentiated populations also showed phenotypic differences that may be related to their ecological adaptations. Interestingly, our analyses identified evidence for recent dispersion and hybridization among the historically subdivided geographic populations in nature. Together, our results indicate a changing population structure of A. oligospora in China and that care must be taken in selecting the appropriate strains as biocontrol agents that can effectively reproduce in agriculture soil while maintaining their nematode-trapping ability.
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Affiliation(s)
- Duanyong Zhou
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
- School of Life Science, Yunnan University, Kunming 650032, China;
- School of Biology and Chemistry, Xingyi Normal University for Nationalities, Xingyi 562400, China
| | - Jianping Xu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
- Department of Biology, McMaster University, Hamilton, ON L8S 4K1, Canada
| | - Jianyong Dong
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
- School of Life Science, Yunnan University, Kunming 650032, China;
| | - Haixia Li
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
- School of Life Science, Yunnan University, Kunming 650032, China;
| | - Da Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
- School of Life Science, Yunnan University, Kunming 650032, China;
| | - Juan Gu
- School of Life Science, Yunnan University, Kunming 650032, China;
| | - Ke-Qin Zhang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
| | - Ying Zhang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (D.Z.); (J.D.); (H.L.); (D.W.)
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Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00485-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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A Review of Chenopodium quinoa (Willd.) Diseases-An Updated Perspective. PLANTS 2021; 10:plants10061228. [PMID: 34208662 PMCID: PMC8233811 DOI: 10.3390/plants10061228] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 06/03/2021] [Accepted: 06/07/2021] [Indexed: 12/22/2022]
Abstract
The journey of the Andean crop quinoa (Chenopodium quinoa Willd.) to unfamiliar environments and the combination of higher temperatures, sudden changes in weather, intense precipitation, and reduced water in the soil has increased the risk of observing new and emerging diseases associated with this crop. Several diseases of quinoa have been reported in the last decade. These include Ascochyta caulina, Cercospora cf. chenopodii, Colletotrichum nigrum, C. truncatum, and Pseudomonas syringae. The taxonomy of other diseases remains unclear or is characterized primarily at the genus level. Symptoms, microscopy, and pathogenicity, supported by molecular tools, constitute accurate plant disease diagnostics in the 21st century. Scientists and farmers will benefit from an update on the phytopathological research regarding a crop that has been neglected for many years. This review aims to compile the existing information and make accurate associations between specific symptoms and causal agents of disease. In addition, we place an emphasis on downy mildew and its phenotyping, as it continues to be the most economically important and studied disease affecting quinoa worldwide. The information herein will allow for the appropriate execution of breeding programs and control measures.
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Zhang Y, Mo M, Yang L, Mi F, Cao Y, Liu C, Tang X, Wang P, Xu J. Exploring the Species Diversity of Edible Mushrooms in Yunnan, Southwestern China, by DNA Barcoding. J Fungi (Basel) 2021; 7:310. [PMID: 33920593 PMCID: PMC8074183 DOI: 10.3390/jof7040310] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 04/05/2021] [Accepted: 04/08/2021] [Indexed: 02/07/2023] Open
Abstract
Yunnan Province, China, is famous for its abundant wild edible mushroom diversity and a rich source of the world's wild mushroom trade markets. However, much remains unknown about the diversity of edible mushrooms, including the number of wild edible mushroom species and their distributions. In this study, we collected and analyzed 3585 mushroom samples from wild mushroom markets in 35 counties across Yunnan Province from 2010 to 2019. Among these samples, we successfully obtained the DNA barcode sequences from 2198 samples. Sequence comparisons revealed that these 2198 samples likely belonged to 159 known species in 56 different genera, 31 families, 11 orders, 2 classes, and 2 phyla. Significantly, 51.13% of these samples had sequence similarities to known species at lower than 97%, likely representing new taxa. Further phylogenetic analyses on several common mushroom groups including 1536 internal transcribed spacer (ITS) sequences suggested the existence of 20 new (cryptic) species in these groups. The extensive new and cryptic species diversity in wild mushroom markets in Yunnan calls for greater attention for the conservation and utilization of these resources. Our results on both the distinct barcode sequences and the distributions of these sequences should facilitate new mushroom species discovery and forensic authentication of high-valued mushrooms and contribute to the scientific inventory for the management of wild mushroom markets.
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Affiliation(s)
- Ying Zhang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
| | - Meizi Mo
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
- School of Life Science, Yunnan University, Kunming 650032, China
| | - Liu Yang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
- School of Life Science, Yunnan University, Kunming 650032, China
| | - Fei Mi
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
| | - Yang Cao
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
| | - Chunli Liu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
| | - Xiaozhao Tang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
| | - Pengfei Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
| | - Jianping Xu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, and Key Laboratory for Southwest Microbial Diversity of the Ministry of Education, Yunnan University, Kunming 650032, China; (Y.Z.); (M.M.); (L.Y.); (F.M.); (Y.C.); (C.L.); (X.T.); (P.W.)
- Department of Biology, McMaster University, Hamilton, ON L8S 4K1, Canada
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