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Matthews H, de Jong G, Maal T, Claes P. Static and Motion Facial Analysis for Craniofacial Assessment and Diagnosing Diseases. Annu Rev Biomed Data Sci 2022; 5:19-42. [PMID: 35440145 DOI: 10.1146/annurev-biodatasci-122120-111413] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Deviation from a normal facial shape and symmetry can arise from numerous sources, including physical injury and congenital birth defects. Such abnormalities can have important aesthetic and functional consequences. Furthermore, in clinical genetics distinctive facial appearances are often associated with clinical or genetic diagnoses; the recognition of a characteristic facial appearance can substantially narrow the search space of potential diagnoses for the clinician. Unusual patterns of facial movement and expression can indicate disturbances to normal mechanical functioning or emotional affect. Computational analyses of static and moving 2D and 3D images can serve clinicians and researchers by detecting and describing facial structural, mechanical, and affective abnormalities objectively. In this review we survey traditional and emerging methods of facial analysis, including statistical shape modeling, syndrome classification, modeling clinical face phenotype spaces, and analysis of facial motion and affect. Expected final online publication date for the Annual Review of Biomedical Data Science, Volume 5 is August 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Harold Matthews
- Department of Human Genetics, KU Leuven, Leuven, Belgium; .,Medical Imaging Research Center, UZ Leuven, Leuven, Belgium.,Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, Australia
| | - Guido de Jong
- 3D Lab, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Thomas Maal
- 3D Lab, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Peter Claes
- Department of Human Genetics, KU Leuven, Leuven, Belgium; .,Medical Imaging Research Center, UZ Leuven, Leuven, Belgium.,Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, Australia.,Processing Speech and Images (PSI), Department of Electrical Engineering (ESAT), KU Leuven, Leuven, Belgium
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Matthews HS, Palmer RL, Baynam GS, Quarrell OW, Klein OD, Spritz RA, Hennekam RC, Walsh S, Shriver M, Weinberg SM, Hallgrimsson B, Hammond P, Penington AJ, Peeters H, Claes PD. Large-scale open-source three-dimensional growth curves for clinical facial assessment and objective description of facial dysmorphism. Sci Rep 2021; 11:12175. [PMID: 34108542 PMCID: PMC8190313 DOI: 10.1038/s41598-021-91465-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 05/17/2021] [Indexed: 12/21/2022] Open
Abstract
Craniofacial dysmorphism is associated with thousands of genetic and environmental disorders. Delineation of salient facial characteristics can guide clinicians towards a correct clinical diagnosis and understanding the pathogenesis of the disorder. Abnormal facial shape might require craniofacial surgical intervention, with the restoration of normal shape an important surgical outcome. Facial anthropometric growth curves or standards of single inter-landmark measurements have traditionally supported assessments of normal and abnormal facial shape, for both clinical and research applications. However, these fail to capture the full complexity of facial shape. With the increasing availability of 3D photographs, methods of assessment that take advantage of the rich information contained in such images are needed. In this article we derive and present open-source three-dimensional (3D) growth curves of the human face. These are sequences of age and sex-specific expected 3D facial shapes and statistical models of the variation around the expected shape, derived from 5443 3D images. We demonstrate the use of these growth curves for assessing patients and show that they identify normal and abnormal facial morphology independent from age-specific facial features. 3D growth curves can facilitate use of state-of-the-art 3D facial shape assessment by the broader clinical and biomedical research community. This advance in phenotype description will support clinical diagnosis and the understanding of disease pathogenesis including genotype–phenotype relations.
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Affiliation(s)
- Harold S Matthews
- Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium. .,Medical Imaging Research Center, UZ Leuven, Herestraat 49, 3000, Leuven, Belgium. .,Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, 3052, Australia.
| | - Richard L Palmer
- School of Earth and Planetary Sciences, Faculty of Science and Engineering, Curtin University, Perth, 6845, Australia
| | - Gareth S Baynam
- School of Earth and Planetary Sciences, Faculty of Science and Engineering, Curtin University, Perth, 6845, Australia.,Western Australian Register of Developmental Anomalies, King Edward Memorial Hospital, Perth, Australia.,Telethon Kids Institute and Division of Paediatrics, Faculty of Health and Medical Sciences, University of Western Australia, Perth, Australia.,Faculty of Medicine, Notre Dame University, Fremantle, Australia
| | - Oliver W Quarrell
- Dept Clinical Genetics, Sheffield Children's NHS Trust, OPDII Northern General Hospital, Herries Road, Sheffield, S5 7AU, UK
| | - Ophir D Klein
- Program in Craniofacial Biology, Departments of Orofacial Sciences and Pediatrics, and Institute for Human Genetics, University of California, San Francisco, San Francisco, CA, USA
| | - Richard A Spritz
- Human Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, CO, USA
| | - Raoul C Hennekam
- Department of Pediatrics, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, The Netherlands
| | - Susan Walsh
- Department of Biology, Indiana University Purdue University Indianapolis, Indianapolis, IN, 46202, USA
| | - Mark Shriver
- Department of Anthropology, Pennsylvania State University, State College, PA, 16802, USA
| | - Seth M Weinberg
- Center for Craniofacial and Dental Genetics, University of Pittsburgh, Pittsburgh, PA, 15219, USA
| | - Benedikt Hallgrimsson
- Department of Cell Biology & Anatomy, Cumming School of Medicine, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, T2T 4N1, Canada
| | - Peter Hammond
- Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium
| | - Anthony J Penington
- Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, 3052, Australia.,Department of Plastic and Maxillofacial Surgery, Royal Children's Hospital, Melbourne, 3052, Australia.,Department of Pediatrics, University of Melbourne, Melbourne, 3052, Australia
| | - Hilde Peeters
- Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium
| | - Peter D Claes
- Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium.,Medical Imaging Research Center, UZ Leuven, Herestraat 49, 3000, Leuven, Belgium.,Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, 3052, Australia.,Department of Electrical Engineering, ESAT/PSI, KU Leuven, 3000, Leuven, Belgium
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Katina S, Vittert L, W. Bowman A. Functional data analysis and visualisation of three-dimensional surface shape. J R Stat Soc Ser C Appl Stat 2021; 70:691-713. [PMID: 34690375 PMCID: PMC8518487 DOI: 10.1111/rssc.12482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 11/19/2020] [Accepted: 02/15/2021] [Indexed: 11/30/2022]
Abstract
The advent of high-resolution imaging has made data on surface shape widespread. Methods for the analysis of shape based on landmarks are well established but high-resolution data require a functional approach. The starting point is a systematic and consistent description of each surface shape and a method for creating this is described. Three innovative forms of analysis are then introduced. The first uses surface integration to address issues of registration, principal component analysis and the measurement of asymmetry, all in functional form. Computational issues are handled through discrete approximations to integrals, based in this case on appropriate surface area weighted sums. The second innovation is to focus on sub-spaces where interesting behaviour such as group differences are exhibited, rather than on individual principal components. The third innovation concerns the comparison of individual shapes with a relevant control set, where the concept of a normal range is extended to the highly multivariate setting of surface shape. This has particularly strong applications to medical contexts where the assessment of individual patients is very important. All of these ideas are developed and illustrated in the important context of human facial shape, with a strong emphasis on the effective visual communication of effects of interest.
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Affiliation(s)
- Stanislav Katina
- Institute of Mathematics & StatisticsMasaryk UniversityBrnoCzech Republic
- Institute of Computer Science of the Czech Academy of SciencesPragueCzech Republic
| | - Liberty Vittert
- Olin Business SchoolWashington University in St. LouisSt. LouisMOUSA
| | - Adrian W. Bowman
- School of Mathematics & StatisticsThe University of GlasgowGlasgowUK
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