Food supply and size class depending variations in phytodetritus intake in the benthic foraminifer Ammonia tepida

Trophic strategies of intertidal foraminifera explored with single-cell microbiome metabarcoding and morphological methods: What is on the menu?

In mudflats, interactions and transfers of nutrients and secondary metabolites may drive ecosystems and biodiversity. Foraminifera have complex trophic strategies as they often rely on bacteria and eukaryotes or on potential symbionts for carbon and nitrogen resources. The capacity of these protists to use a wide range of adaptive mechanisms requires clarifying the relationships between them and their microbial associates. Here, we investigate the interactions of three foraminiferal species with nearby organisms in situ, by coupling molecular (cloning/Sanger and high-throughput sequencing) and direct counting and morphological identification with microscopy. This coupling allows the identification of the organisms found in or around three foraminiferal species through molecular tools combined with a direct counting of foraminifera and diatoms present in situ through microscopy methods. Depending on foraminiferal species, and in addition to diatom biomass, diatom frustule shape, size and species are key factors driving the abundance and diversity of foraminifera in mudflat habitats. Three different trophic strategies were deduced for the foraminifera investigated in this study: Ammonia sp. T6 has an opportunistic strategy and is feeding on bacteria, nematoda, fungi, and diatoms when abundant; Elphidium oceanense is feeding mainly on diatoms, mixed with other preys when they are less abundant; and Haynesina germanica is feeding almost solely on medium-large pennate diatoms. Although there are limitations due to the lack of species coverage in DNA sequence databases and to the difficulty to compare morphological and molecular data, this study highlights the relevance of combining molecular with morphological tools to study trophic interactions and microbiome communities of protists at the single-cell scale.

Conservation Paleobiology as a Tool to Define Reference Conditions in Naturally Stressed Transitional Settings: Micropaleontological Insights from the Holocene of the Po Coastal Plain (Italy)

The key role of paralic environments as providers of ecosystem services, associated with their increasingly threatened state, led to the definition of international water management policies aimed to improve ecological quality status (EcoQs). Restoration actions rely on the definition of reference conditions, which is a particularly challenging task in naturally stressed transitional environments. In the present work, we apply the diversity index Exp(H’bc) on benthic foraminifer assemblages from two anthropogenically unimpacted transitional to coastal Holocene sediment successions of the Po coastal plain, in order to assess past EcoQs (PaleoEcoQs). Ostracod ecological groups provided detailed insights on naturally stressful paleoenvironmental conditions. We show that “poor” to “moderate” PaleoEcoQs are recorded by biological indicators at reference conditions under fluctuations of chemical-physical parameters and organic matter enrichment. We emphasize the importance of a site-specific paleobiological approach, as significant differences in diversity occur even on a short spatial scale. This study illustrates that early to mid-Holocene sediment successions resulted to be appropriate for conservation paleobiological purposes, providing a high-resolution paleoecological record under the influence of the Holocene sea-level rise in analogy with the present-day global change.